Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001625265.1_202016-
04-19] 1,046 sequences; 52,836,184 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq356 156 1e-32
seq439 132 1e-25
seq836 122 2e-22
>seq356
Length=453554
Score = 156 bits (172), Expect = 1e-32
Identities = 158/206 (77%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || ||||| || || ||||| || || || || ||||| ||||| ||| ||||||
Sbjct 345369 CAGATCTTCGTCAAGACCCTCACTGGCAAGACTATTACCCTTGAGGTCGAATCGTCAGAC 345428
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||||||| |||||||| ||||| |||||||| || || ||||| || ||||||||
Sbjct 345429 ACCATCGACAACGTCAAGTCGAAGATCCAGGACAAGGAGGGTATCCCCCCCGACCAGCAG 345488
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || || ||||||||||| ||||| |||||||| | || || | || || ||| ||
Sbjct 345489 CGCCTGATTTTCGCCGGAAAGCAGCTGGAAGATGGTCGCACCCTGTCTGACTACAACATC 345548
Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129
|| || || || || ||||| |||||
Sbjct 345549 CAGAAGGAGTCTACCCTGCACCTTGT 345574
Score = 132 bits (146), Expect = 1e-25
Identities = 155/207 (75%), Gaps = 2/207 (1%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||||||||| || || | || ||||| ||||| || || ||||| || || |||
Sbjct 345597 CAAATTTTCGTCAAGACCTTGACTGGAAAGACGATTACACTAGAGGTCGAGTCTTCGGAC 345656
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || || |||||||| |||||||||||||| || || || ||||| ||||||||
Sbjct 345657 ACGATTGACAACGTCAAGTCGAAGATTCAGGACAAGGAGGGCATTCCTCCCGACCAGCAG 345716
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102
|| |||||||| || || || ||| | || ||||| | || |||| ||||| ||| |
Sbjct 345717 CGTCTTATCTTTGCTGGTAAGCAGTTGGAGGATGGTCGCAC-CTTGAGTGATTACAACAT 345775
Query 178103 CCAAAAAGAATCAACACTGCATCTTGT 178129
||| || || || || || ||||||||
Sbjct 345776 CCAGAAGGAGTCGACGCTTCATCTTGT 345802
Score = 129 bits (142), Expect = 1e-24
Identities = 148/198 (75%), Gaps = 1/198 (1%)
Strand=Plus/Plus
Query 177931 TCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCG 177990
|||| || || || || || || || |||||||| ||||| || || || |||||||
Sbjct 345148 TCGTCAAGACGCTTACCGGCAAGACCATCACCCTTGAGGTTGAGTCTTCTGATACCATCG 345207
Query 177991 AGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTA 178050
| || ||||| |||||||||||||||||| || || || || |||||||| || | |
Sbjct 345208 ACAATGTCAAGTCAAAGATTCAGGACAAAGAGGGCATTCCCCCTGACCAGCAGCGCTTGA 345267
Query 178051 TCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAG 178110
||||||| || || ||||| || || ||| |||| || ||||||| ||| | || || |
Sbjct 345268 TCTTCGCAGGCAAGCAGCTTGAGGACGGACGGACCCTGTCCGATTACAACATTCAGAAGG 345327
Query 178111 AATCAACACTGCATCTTG 178128
| || || || || ||||
Sbjct 345328 AGTCCACCCTCCA-CTTG 345344
Score = 122 bits (134), Expect = 2e-22
Identities = 141/189 (75%), Gaps = 1/189 (1%)
Strand=Plus/Plus
Query 177943 TCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAAC 178002
|||| || || || |||||||| ||||| || ||| || |||||||| || |||||
Sbjct 344876 TCACCGGCAAGACCATCACCCTTGAGGTCGAGTCCTCCGATACCATCGACAATGTCAAGT 344935
Query 178003 AAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAA 178062
|||||| |||||||| || || || || || |||||||| || || || ||||||||||
Sbjct 344936 CAAAGATCCAGGACAAGGAGGGCATTCCCCCTGACCAGCAGCGCCTGATTTTCGCCGGAA 344995
Query 178063 AACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGC 178122
| ||||| || || || | || || |||| || ||| |||| || || || || || |
Sbjct 344996 AGCAGCTTGAGGACGGCCGCACCCTGTCCGACTACAACATCCAGAAGGAGTCCACCCTTC 345055
Query 178123 ATCTTGTTT 178131
| |||| ||
Sbjct 345056 A-CTTGGTT 345063
>seq439
Length=70108
Score = 132 bits (146), Expect = 1e-25
Identities = 153/205 (75%), Gaps = 1/205 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || ||||| || || || || || || || |||||||| |||||||| || |||
Sbjct 4103 CAGATCTTCGTCAAGACCCTAACGGGTAAGACTATCACCCTTGAGGTGGAGTCTTCCGAC 4044
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||||||| || ||||| ||||| |||||||| || || ||||| || ||||||||
Sbjct 4043 ACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAG 3984
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || ||||| || ||||| |||||||| || || | || || |||| || ||| ||
Sbjct 3983 CGCCTGATCTTTGCTGGAAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTACAACATC 3924
Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128
|| || || || || || || ||||
Sbjct 3923 CAGAAGGAGTCCACCCTTCA-CTTG 3900
>seq836
Length=245415
Score = 122 bits (134), Expect = 2e-22
Identities = 135/180 (75%), Gaps = 0/180 (0%)
Strand=Plus/Minus
Query 177929 TTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCAT 177988
||||||||| || || || || || || || ||||| ||||| || ||| ||||| ||
Sbjct 44462 TTTCGTGAAGACCCTGACGGGTAAGACCATTACCCTTGAGGTCGAGTCCTCGGACACGAT 44403
Query 177989 CGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACT 178048
||| || ||||| ||||| |||||||| || || ||||| || |||||||| || |
Sbjct 44402 CGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGCTT 44343
Query 178049 TATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108
||||||||||| || |||||||| || || | || || |||| || ||| |||| ||
Sbjct 44342 GATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAA 44283
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203715067744924
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |