Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20tofieldiae_20[genbank_20GCA_5F001625265.1_202016-
04-19] 1,046 sequences; 52,836,184 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq439 158 1e-33
seq836 141 9e-29
seq356 127 2e-24
seq1020 87.8 2e-12
>seq439
Length=70108
Score = 158 bits (174), Expect = 1e-33
Identities = 174/230 (76%), Gaps = 4/230 (2%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || || || | |||| || || ||| ||||||||| ||||| |||||||||
Sbjct 3880 CCACCACGCAGGCGCAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 3939
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|||||||| |||| ||||||||||| || || || ||||||||||| ||||| | |||
Sbjct 3940 AGGGTGCGGCCGTCCTCGAGCTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCAGGGGGG 3999
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTCCA 41813
| || |||||||||| ||| || ||| || | || | |||||| |||||||
Sbjct 4000 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG--ATGGTGTCGGAAGACTCCA 4057
Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863
|||| | || || || |||||||| || ||||| ||||| |||||||||
Sbjct 4058 CCTCAAGGGTGATAGTCTTACCCGTTAGGGTCTTGACGAAGATCTGCATG 4107
>seq836
Length=245415
Score = 141 bits (156), Expect = 9e-29
Identities = 143/184 (78%), Gaps = 4/184 (2%)
Strand=Plus/Plus
Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732
||||||| ||||| ||||||||||||||||| |||| |||||||||||||||||||| |
Sbjct 44281 CCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 44340
Query 41733 TCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGA 41790
||| |||||| ||||| | ||| | || |||||||||| ||| || ||| || |
Sbjct 44341 TCAAGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 44400
Query 41791 CGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTAC 41850
|| | ||||| ||||| ||||| | || || || ||||||||||| ||||| ||
Sbjct 44401 CG--ATCGTGTCCGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCAC 44458
Query 41851 GAAA 41854
||||
Sbjct 44459 GAAA 44462
>seq356
Length=453554
Score = 127 bits (140), Expect = 2e-24
Identities = 163/220 (74%), Gaps = 6/220 (3%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || ||||| | ||||| || || ||| ||||||||||||||| || |||||
Sbjct 345364 CCACCACGGAGACGCAGCACCAAGTGGAGGGTGGACTCCTTCTGAATGTTGTAATCGGAC 345305
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
||||| || |||| || ||||||||||| ||||| |||| |||||| ||||| | ||||
Sbjct 345304 AGGGTCCGTCCGTCCTCAAGCTGCTTGCCTGCGAAGATCAAGCGCTGCTGGTCAGGGGGA 345245
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTG-CTT--CAACGACGACACAGTGTCGCTCGACTCC 41812
| || ||| |||||| ||| | |||| ||| || | || | || || |||||
Sbjct 345244 ATGCCCTCTTTGTCC-TGAATCTTTGACTTGACATTGTCG--ATGGTATCAGAAGACTCA 345188
Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGA 41852
||||| | || || || || || || |||||||| ||||
Sbjct 345187 ACCTCAAGGGTGATGGTCTTGCCGGTAAGCGTCTTGACGA 345148
Score = 125 bits (138), Expect = 7e-24
Identities = 114/144 (79%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || || || | |||| || || ||| ||||||||| ||||| ||||||||
Sbjct 345080 CCACCACGAAGGCGGAGAACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 345021
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|||||||| |||| || |||||||| |||||||| ||||||||||| ||||| | ||||
Sbjct 345020 AGGGTGCGGCCGTCCTCAAGCTGCTTTCCGGCGAAAATCAGGCGCTGCTGGTCAGGGGGA 344961
Query 41756 ACGCTCTCCTTGTCCATGATTTTT 41779
| || |||||||||| ||| |||
Sbjct 344960 ATGCCCTCCTTGTCCTGGATCTTT 344937
Score = 125 bits (138), Expect = 7e-24
Identities = 166/228 (73%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || || || | || || ||||| || ||||||||| ||||| ||||| ||
Sbjct 345592 CCTCCACGGAGGCGAAGGACAAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCAGAC 345533
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|||||||| | || || |||||||| |||||||| ||||||||||| ||||| | |||
Sbjct 345532 AGGGTGCGACCATCTTCCAGCTGCTTTCCGGCGAAAATCAGGCGCTGCTGGTCGGGGGGG 345473
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814
| | |||||||||| ||| || ||| ||| | | | ||||| ||| || ||
Sbjct 345472 ATACCCTCCTTGTCCTGGATCTTCGACTT-GACGTTGTCGATGGTGTCTGACGATTCGAC 345414
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
||| | || || || || || || || ||||| ||||| ||||||||
Sbjct 345413 CTCAAGGGTAATAGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 345366
>seq1020
Length=182849
Score = 87.8 bits (96), Expect = 2e-12
Identities = 87/113 (77%), Gaps = 0/113 (0%)
Strand=Plus/Plus
Query 85800 CGTATCGCACCTCGTTCCGGCCTCGCCAGCAAGCACGGTATCGACGTGGGCGCCGGGGTC 85859
|| || || || || ||||| ||||| |||| || |||||| ||||||||| |||
Sbjct 11856 CGCATTGCCCCCCGCTCCGGTCTCGCTGCCAAGAACTTCATCGACACGGGCGCCGGTGTC 11915
Query 85860 ATCGACGCCGACTACCGCGGAAACGTCATCATCGTACTCTTCAACCACGGCGA 85912
|||||||| ||||||||||| | |||| || | ||||||||||||| |||
Sbjct 11916 ATCGACGCTGACTACCGCGGCGAGGTCAAGGTCCTCCTCTTCAACCACGCCGA 11968
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462297955375200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |