Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryphonectria_20radicalis_20[genbank_20GCA_5F002179595.1_202017-06-
08] 2,318 sequences; 41,022,676 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq1933 163 3e-35
seq1567 89.7 6e-13
>seq1933
Length=42650
Score = 163 bits (180), Expect = 3e-35
Identities = 446/675 (66%), Gaps = 20/675 (3%)
Strand=Plus/Plus
Query 53981 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATA 54040
|| ||||| || | || ||||| | | ||| || |||| | || ||| || |||||
Sbjct 26473 CCGGGACACTCGTTGGGGCACATAAGGGTCCAGTCGCCGTTCTTCTCCACACGCTTCATG 26532
Query 54041 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCT 54100
||||||||||| ||||| || || | || || || | | | || || |||||
Sbjct 26533 AAGAGATCAGGGATCCAGAGGGCCAGGAAGAGGTCACGAGCACGGACCTCTTCCTTTCCG 26592
Query 54101 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 54160
||||| || ||||||||| | | | ||||| |||||||| |||| ||| |||
Sbjct 26593 TGGTTCTTGCGCAGGTCGAGGAACTCGAAGACATCAGCGTGCCACGGCTCCAGGTAGATG 26652
Query 54161 GTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 54220
| | | || || || ||||| || ||||| || | ||| | ||| ||||| || |
Sbjct 26653 GCAAAGGCACCGGGGCGCTTGTTGCCACCCTGGTCGACGTAGCGAGCAGTGTTGTTGAAG 26712
Query 54221 ACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCA 54280
|| | || ||| || || || ||||| || | || ||||| |||| |||||| |||
Sbjct 26713 ACACGCAGCATGGGGATGATGCCATTAGACGTGCCGTTGGTGCCGGCAATATAGGAGCCA 26772
Query 54281 CTGGCACGAAT--ATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATG 54338
||||||| || | |||| ||||| || || || ||||| || ||||| | |
Sbjct 26773 GTGGCACGGATGCGGTGGACATTG--AGACCAATGCCTCCGGCCATCTTGGAGATCATGG 26830
Query 54339 CGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAA 54398
| || || | || |||||||| ||||| || ||||| ||| |||||| | ||| |
Sbjct 26831 CACAGGTCTTGAGGGTGTCATAGATACCCTCGATGCTATCCTCCTTCATGTCCACTAGGA 26890
Query 54399 AACAGCTAGACATTTGGTGAC-GACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGC 54457
| || |||| | ||| | || || || || || |||| || || ||||||||
Sbjct 26891 AGCACGATGACAGCT-GTGCCTGAGGCGTGCCGGCGTTGAATAGAGTCGGCGAAGCGTGT 26949
Query 54458 GTAAACCATTTTTCAGA-AAGTAGATTGTACGTCTCGATAGCTGAGTCTATAT------C 54510
|| || | || | || | |||| ||||| ||||| | | | || || | |
Sbjct 26950 GTGAAGAACTTGTTGGAGAGGTAG-TTGTAGGTCTCCAGAACCCTCTCGATGTTGTCTCC 27008
Query 54511 CCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTT 54570
||| |||| || || ||||||||||| | ||||||||| || | || |||| |||
Sbjct 27009 CCA--GATG----CCAACGGCGACACGCATCAGCATGTGCTGTGGCCGCTCGACGACCTT 27062
Query 54571 GTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGA 54630
| ||| | || || | || || |||| || || || || || || | ||||
Sbjct 27063 GCCGTTGAGCTTGAGGAGATACGAGCGCTCCAGGGTCTTGAAGCCGAAGTATTGGTATTG 27122
Query 54631 AAAGTCTCGTTCGTA 54645
||||||| || ||
Sbjct 27123 GTAGTCTCGGTCATA 27137
>seq1567
Length=91444
Score = 89.7 bits (98), Expect = 6e-13
Identities = 151/218 (69%), Gaps = 3/218 (1%)
Strand=Plus/Minus
Query 24126 AACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAA 24185
|||| || || ||||| || |||||||||||||| | | || | ||||||||
Sbjct 45315 AACAGCAGGCAGGCGAAGTCAGTATGTAGACCCTCGTCACGAGAGATCAGCTCGTTGGAG 45256
Query 24186 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCA 24245
|| || || || ||||| ||||||||||| || ||||| || ||||| || || | ||
Sbjct 45255 AAGGTCAGACCAGGCATCAGGCCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCGCCG 45196
Query 24246 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGG---CG 24302
||||| || || || || || || || || | ||| | | | || || |
Sbjct 45195 CTGAAGAAGATACCCTCGACGGCAGCGAATGCGACAAGGCGCTGCGCGTAGGTGGACTCC 45136
Query 24303 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTT 24340
| ||| || |||||| | ||||||| |||||||||||
Sbjct 45135 CGGTCCTGGATCCACCTCAGAGCCCAGTCGGCCTTCTT 45098
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 593704396916640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |