Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryphonectria_20radicalis_20[genbank_20GCA_5F002179595.1_202017-06-
08] 2,318 sequences; 41,022,676 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq1567 205 1e-47
seq1543 159 4e-34
seq757 158 1e-33
seq1759 123 3e-23
>seq1567
Length=91444
Score = 205 bits (226), Expect = 1e-47
Identities = 323/456 (71%), Gaps = 5/456 (1%)
Strand=Plus/Plus
Query 116982 AGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCC 117041
|||||||||| ||||| ||| | |||||| | | | ||| || ||| || ||||||
Sbjct 45099 AGAAGGCCGACTGGGCTCTGAGGTGGATCCAGGACCGGGAGTCCACCTACGCGCAGCGCC 45158
Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTT 117101
| || || ||||| ||||||||||| ||||||| ||| |||||| |||| || |
Sbjct 45159 TTGTCGCATTCGCTGCCGTCGAGGGTATCTTCTTCAGCGGCGCCTTCGCCTCCATCTTCT 45218
Query 117102 GGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGG 117161
|||||||||| || ||||| ||||| || ||||| ||| ||||||||| ||||| | |
Sbjct 45219 GGCTCAAGAAGCGTGGCCTGATGCCTGGTCTGACCTTCTCCAACGAGCTGATCTCTCGTG 45278
Query 117162 ACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGA 117221
|||||||||| ||| ||||| ||||| |||||||| || || | || || |
Sbjct 45279 ACGAGGGTCTACATACTGACTTCGCCTGCCTGCTGTTCTCCCACCTGAACAACCGGCCCA 45338
Query 117222 GCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCA 117281
|| | |||||| || ||| |||| || || || | ||| ||| || ||||| |
Sbjct 45339 GCAAGCAGCGCGTAGAGGCTATCATCACGGATGCCGTTGTCATTGAGAAGGAGTTCCTGA 45398
Query 117282 CCGAAGCGCTG-CCGGTGCGTCTGCTGGGACTCAATTGCGAAAC-GATGTCGCAATACAT 117339
| || || ||| || ||| | ||||| || | || || | | |||| ||| |||||
Sbjct 45399 CTGAGGCCCTGCCCTGTG-GCCTGCTCGGCATGAA-CGCCACCCTGATGAAGCAGTACAT 45456
Query 117340 CGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCC 117399
||||||||||||||| | || || ||| || | | || ||| |||||| | |
Sbjct 45457 TGAGTTCGTCGCCGACCGTCTCCTCGTCGCCCTCGGCAACGAGAAGGTCTACAAGTCTTC 45516
Query 117400 CAACCCGCTGGACTTTATGAACCTCATCT-CCTTGG 117434
|||||| | ||||| ||| | ||||| ||||||
Sbjct 45517 CAACCCCTTCGACTTCATGGAGAACATCTCCCTTGG 45552
Score = 158 bits (174), Expect = 1e-33
Identities = 208/285 (73%), Gaps = 5/285 (2%)
Strand=Plus/Plus
Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695
|| |||| |||||||| ||| |||||| || |||||||| | |||||| | || |||
Sbjct 44688 ATCTGGCAGATGTACAAGAAGCACGAGGCATCCTTCTGGACTGCTGAGGAGATTGATCTG 44747
Query 116696 TCCAAGGACACGAGCGACTGGGAG---CGCTTGAACGACAACGAGCGCCATTTCATCAAG 116752
||||||||| | ||||||| | ||| ||| | | ||||| | ||||||
Sbjct 44748 TCCAAGGACCTGCACGACTGGAACAACCGCCTGACCAATGACGAGAAATACTTCATCTCC 44807
Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812
||| | || ||||| || |||||| |||||||| ||||||||||| || |||||||
Sbjct 44808 CACATCCTCGCCTTCTTTGCCGCCTCGGACGGCATTGTCAACGAGAACTTGATCGAGCGC 44867
Query 116813 TTC-GCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCAT 116871
||| || | ||||| ||| | | ||||| || |||||||||||||| |||| | ||
Sbjct 44868 TTCAGCGC-TGAGGTTCAGATTCCTGAGGCCCGTTGCTTCTACGGCTTCCAGACCATGAT 44926
Query 116872 GGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTA 116916
||||||| | ||||| || | || || ||| |||||||| ||
Sbjct 44927 GGAGAACATCCACTCCGAGACATACTCCCTCCTGATCGACACCTA 44971
>seq1543
Length=161075
Score = 159 bits (176), Expect = 4e-34
Identities = 163/210 (78%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || |||||||| ||||| ||||||||| |||| ||||| || ||
Sbjct 71940 ATGCAGATCTTCGTCAAGACGCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCCTCC 71881
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | | |||| | |||| || |||| ||||| ||||| |||||| | |||||
Sbjct 71880 GACACCATCGACAACG-TGAAGGCCAAGATTCAGGACAAGGAGGGTATCCCCCCAGACCA 71822
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| || ||||||| || || || ||||| || |||| || |||||| |||||||||
Sbjct 71821 GCAGCGCCTCATCTTTGCTGGAAAGCAGCTCGAGGACGGCCGTACCCTCTCCGACTACAA 71762
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898
||||||||||||| | || || || || ||
Sbjct 71761 CATCCAGAAGGAGTCTACTCTCCACCTCGT 71732
Score = 158 bits (174), Expect = 1e-33
Identities = 175/231 (76%), Gaps = 2/231 (1%)
Strand=Plus/Minus
Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746
|| ||||| || ||||| || || ||||| ||||| |||||||| | || ||||| ||
Sbjct 72171 AAGATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACTCTTGAGGTCGAGTCC 72112
Query 40747 ACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805
|||||| | | | |||| | |||| || |||| ||||| ||||||||||| | ||
Sbjct 72111 TCCGACACCATCGACAACG-TGAAGGCCAAGATTCAGGACAAGGAGGGCATCCCTCCTGA 72053
Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865
|||||| || || || | ||| ||||| ||||| || |||| ||||||||| ||||||
Sbjct 72052 CCAGCAGCGCCTGATTTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTA 71993
Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916
|||||||||||||||| |||| || || || || | || || | |||||
Sbjct 71992 CAACATCCAGAAGGAGTCCACCCTTCACCTGGTCCTCCGTCTGCGTGGCGG 71942
Score = 140 bits (154), Expect = 3e-28
Identities = 162/216 (75%), Gaps = 2/216 (1%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || ||||| ||||| |||||||| |||| ||||| | |
Sbjct 71712 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACTCTCGAGGTCGAGTCTTCG 71653
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|| | | | |||| | |||| || |||| ||||| ||||| ||||| | |||||
Sbjct 71652 GATACAATTGACAACG-TGAAGGCCAAGATTCAGGACAAGGAGGGTATCCCACCAGACCA 71594
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| || ||||||| ||||||||| |||||||| || | || || ||| ||||||||
Sbjct 71593 GCAGCGTCTCATCTTCGCGGGCAAGCAGCTGGAGGATGGCCGGACACTCTCAGACTACAA 71534
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904
||| ||||||||| | |||||||| | ||| ||||
Sbjct 71533 CATTCAGAAGGAGTCGACGCTGCACTTGGTGCTGCG 71498
>seq757
Length=325751
Score = 158 bits (174), Expect = 1e-33
Identities = 171/227 (75%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || ||||||||||| || |||||| | || || || | ||
Sbjct 29834 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCATCC 29893
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||| | | | | |||||| ||||| | ||||| |||||||||||| | ||||||
Sbjct 29894 GACACCATCGACAATGTCAAGGCCAAAATCCAGGACAAGGAGGGCATCCCCCCAGACCAG 29953
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| || || |||| || ||||| ||||| || |||| |||||||| ||||||||||
Sbjct 29954 CAGCGCCTGATCTTTGCTGGCAAGCAGCTCGAGGACGGCCGCACCCTGTCCGACTACAAC 30013
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916
|| ||||||||| |||| ||||| || || ||||| || | || ||
Sbjct 30014 ATTCAGAAGGAGTCCACCCTGCACCTGGTCCTGCGCCTGCGTGGTGG 30060
>seq1759
Length=81252
Score = 123 bits (136), Expect = 3e-23
Identities = 138/182 (76%), Gaps = 2/182 (1%)
Strand=Plus/Minus
Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758
||||| || || || |||||||| || |||||| |||| || || | |||||| | |
Sbjct 67025 TTCGTGAAGACCCTGACGGGCAAGACTATCACCCTCGAGGTGGAGTCTTCCGACACCATC 66966
Query 40759 CA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACT 40817
| |||| | |||| || || | ||||| |||||||| ||| | |||||||| ||| |
Sbjct 66965 GACAACGTT-AAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCTGACCAGCAGCGATT 66907
Query 40818 CATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAA 40877
|||| ||| ||||| ||||| || || | ||||| ||| ||||||||||||||||||
Sbjct 66906 GATCTTCGCCGGCAAGCAGCTTGAGGATGGCCGCACTCTCTCCGACTACAACATCCAGAA 66847
Query 40878 GG 40879
||
Sbjct 66846 GG 66845
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515204271523680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |