Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryphonectria_20radicalis_20[genbank_20GCA_5F002179595.1_202017-06- 08] 2,318 sequences; 41,022,676 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq1567 205 1e-47 seq1543 159 4e-34 seq757 158 1e-33 seq1759 123 3e-23 >seq1567 Length=91444 Score = 205 bits (226), Expect = 1e-47 Identities = 323/456 (71%), Gaps = 5/456 (1%) Strand=Plus/Plus Query 116982 AGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCC 117041 |||||||||| ||||| ||| | |||||| | | | ||| || ||| || |||||| Sbjct 45099 AGAAGGCCGACTGGGCTCTGAGGTGGATCCAGGACCGGGAGTCCACCTACGCGCAGCGCC 45158 Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTT 117101 | || || ||||| ||||||||||| ||||||| ||| |||||| |||| || | Sbjct 45159 TTGTCGCATTCGCTGCCGTCGAGGGTATCTTCTTCAGCGGCGCCTTCGCCTCCATCTTCT 45218 Query 117102 GGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGG 117161 |||||||||| || ||||| ||||| || ||||| ||| ||||||||| ||||| | | Sbjct 45219 GGCTCAAGAAGCGTGGCCTGATGCCTGGTCTGACCTTCTCCAACGAGCTGATCTCTCGTG 45278 Query 117162 ACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGA 117221 |||||||||| ||| ||||| ||||| |||||||| || || | || || | Sbjct 45279 ACGAGGGTCTACATACTGACTTCGCCTGCCTGCTGTTCTCCCACCTGAACAACCGGCCCA 45338 Query 117222 GCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCA 117281 || | |||||| || ||| |||| || || || | ||| ||| || ||||| | Sbjct 45339 GCAAGCAGCGCGTAGAGGCTATCATCACGGATGCCGTTGTCATTGAGAAGGAGTTCCTGA 45398 Query 117282 CCGAAGCGCTG-CCGGTGCGTCTGCTGGGACTCAATTGCGAAAC-GATGTCGCAATACAT 117339 | || || ||| || ||| | ||||| || | || || | | |||| ||| ||||| Sbjct 45399 CTGAGGCCCTGCCCTGTG-GCCTGCTCGGCATGAA-CGCCACCCTGATGAAGCAGTACAT 45456 Query 117340 CGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCC 117399 ||||||||||||||| | || || ||| || | | || ||| |||||| | | Sbjct 45457 TGAGTTCGTCGCCGACCGTCTCCTCGTCGCCCTCGGCAACGAGAAGGTCTACAAGTCTTC 45516 Query 117400 CAACCCGCTGGACTTTATGAACCTCATCT-CCTTGG 117434 |||||| | ||||| ||| | ||||| |||||| Sbjct 45517 CAACCCCTTCGACTTCATGGAGAACATCTCCCTTGG 45552 Score = 158 bits (174), Expect = 1e-33 Identities = 208/285 (73%), Gaps = 5/285 (2%) Strand=Plus/Plus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| ||| |||||| || |||||||| | |||||| | || ||| Sbjct 44688 ATCTGGCAGATGTACAAGAAGCACGAGGCATCCTTCTGGACTGCTGAGGAGATTGATCTG 44747 Query 116696 TCCAAGGACACGAGCGACTGGGAG---CGCTTGAACGACAACGAGCGCCATTTCATCAAG 116752 ||||||||| | ||||||| | ||| ||| | | ||||| | |||||| Sbjct 44748 TCCAAGGACCTGCACGACTGGAACAACCGCCTGACCAATGACGAGAAATACTTCATCTCC 44807 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812 ||| | || ||||| || |||||| |||||||| ||||||||||| || ||||||| Sbjct 44808 CACATCCTCGCCTTCTTTGCCGCCTCGGACGGCATTGTCAACGAGAACTTGATCGAGCGC 44867 Query 116813 TTC-GCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCAT 116871 ||| || | ||||| ||| | | ||||| || |||||||||||||| |||| | || Sbjct 44868 TTCAGCGC-TGAGGTTCAGATTCCTGAGGCCCGTTGCTTCTACGGCTTCCAGACCATGAT 44926 Query 116872 GGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTA 116916 ||||||| | ||||| || | || || ||| |||||||| || Sbjct 44927 GGAGAACATCCACTCCGAGACATACTCCCTCCTGATCGACACCTA 44971 >seq1543 Length=161075 Score = 159 bits (176), Expect = 4e-34 Identities = 163/210 (78%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || |||||||| ||||| ||||||||| |||| ||||| || || Sbjct 71940 ATGCAGATCTTCGTCAAGACGCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCCTCC 71881 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | |||| || |||| ||||| ||||| |||||| | ||||| Sbjct 71880 GACACCATCGACAACG-TGAAGGCCAAGATTCAGGACAAGGAGGGTATCCCCCCAGACCA 71822 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || ||||||| || || || ||||| || |||| || |||||| ||||||||| Sbjct 71821 GCAGCGCCTCATCTTTGCTGGAAAGCAGCTCGAGGACGGCCGTACCCTCTCCGACTACAA 71762 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||||||| | || || || || || Sbjct 71761 CATCCAGAAGGAGTCTACTCTCCACCTCGT 71732 Score = 158 bits (174), Expect = 1e-33 Identities = 175/231 (76%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| || || ||||| ||||| |||||||| | || ||||| || Sbjct 72171 AAGATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACTCTTGAGGTCGAGTCC 72112 Query 40747 ACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 |||||| | | | |||| | |||| || |||| ||||| ||||||||||| | || Sbjct 72111 TCCGACACCATCGACAACG-TGAAGGCCAAGATTCAGGACAAGGAGGGCATCCCTCCTGA 72053 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||| || || || | ||| ||||| ||||| || |||| ||||||||| |||||| Sbjct 72052 CCAGCAGCGCCTGATTTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTA 71993 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||||||| |||| || || || || | || || | ||||| Sbjct 71992 CAACATCCAGAAGGAGTCCACCCTTCACCTGGTCCTCCGTCTGCGTGGCGG 71942 Score = 140 bits (154), Expect = 3e-28 Identities = 162/216 (75%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| ||||| |||||||| |||| ||||| | | Sbjct 71712 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACTCTCGAGGTCGAGTCTTCG 71653 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | |||| | |||| || |||| ||||| ||||| ||||| | ||||| Sbjct 71652 GATACAATTGACAACG-TGAAGGCCAAGATTCAGGACAAGGAGGGTATCCCACCAGACCA 71594 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || ||||||| ||||||||| |||||||| || | || || ||| |||||||| Sbjct 71593 GCAGCGTCTCATCTTCGCGGGCAAGCAGCTGGAGGATGGCCGGACACTCTCAGACTACAA 71534 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||| ||||||||| | |||||||| | ||| |||| Sbjct 71533 CATTCAGAAGGAGTCGACGCTGCACTTGGTGCTGCG 71498 >seq757 Length=325751 Score = 158 bits (174), Expect = 1e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||||||||| || |||||| | || || || | || Sbjct 29834 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCATCC 29893 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||||| ||||| | ||||| |||||||||||| | |||||| Sbjct 29894 GACACCATCGACAATGTCAAGGCCAAAATCCAGGACAAGGAGGGCATCCCCCCAGACCAG 29953 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| || ||||| ||||| || |||| |||||||| |||||||||| Sbjct 29954 CAGCGCCTGATCTTTGCTGGCAAGCAGCTCGAGGACGGCCGCACCCTGTCCGACTACAAC 30013 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 || ||||||||| |||| ||||| || || ||||| || | || || Sbjct 30014 ATTCAGAAGGAGTCCACCCTGCACCTGGTCCTGCGCCTGCGTGGTGG 30060 >seq1759 Length=81252 Score = 123 bits (136), Expect = 3e-23 Identities = 138/182 (76%), Gaps = 2/182 (1%) Strand=Plus/Minus Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758 ||||| || || || |||||||| || |||||| |||| || || | |||||| | | Sbjct 67025 TTCGTGAAGACCCTGACGGGCAAGACTATCACCCTCGAGGTGGAGTCTTCCGACACCATC 66966 Query 40759 CA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACT 40817 | |||| | |||| || || | ||||| |||||||| ||| | |||||||| ||| | Sbjct 66965 GACAACGTT-AAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCTGACCAGCAGCGATT 66907 Query 40818 CATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAA 40877 |||| ||| ||||| ||||| || || | ||||| ||| |||||||||||||||||| Sbjct 66906 GATCTTCGCCGGCAAGCAGCTTGAGGATGGCCGCACTCTCTCCGACTACAACATCCAGAA 66847 Query 40878 GG 40879 || Sbjct 66846 GG 66845 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515204271523680