Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryphonectria_20radicalis_20[genbank_20GCA_5F002179595.1_202017-06- 08] 2,318 sequences; 41,022,676 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq1543 129 5e-25 seq757 118 9e-22 seq1933 93.3 4e-14 seq1759 93.3 4e-14 >seq1543 Length=161075 Score = 129 bits (142), Expect = 5e-25 Identities = 151/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||||| |||||||| || || |||||||| ||| | || || ||||||||||| Sbjct 71737 GTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTACGGCCGTCCTCGAGCTG 71796 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654 |||||||| ||||||| |||||||| || || || || ||||||||||| ||| || Sbjct 71797 CTTTCCAGCAAAGATGAGGCGCTGCTGGTCTGGGGGGATACCCTCCTTGTCCTGAATCTT 71856 Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 || || | |||| |||||| | | ||||||||||| ||| | || |||||||| Sbjct 71857 GGCCTTCACGTTGTCGATGGTGTCGGAGGACTCGACCTCGAGGGTGATGGTCTTGCCGGT 71916 Query 118715 CAGAGTTTTTACAAAAATCTGCAT 118738 || || || || || |||||||| Sbjct 71917 GAGCGTCTTGACGAAGATCTGCAT 71940 Score = 118 bits (130), Expect = 9e-22 Identities = 157/216 (73%), Gaps = 4/216 (2%) Strand=Plus/Plus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTG--CGCGTA 118583 || ||||||||| | || ||||| || ||||||||||| | || | |||| || | Sbjct 71500 CAGCACCAAGTGCAGCGTCGACTCCTTCTGAATGTTGTAGT--CTGAGAGTGTCCGGCCA 71557 Query 118584 TCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTG 118643 ||||| ||||| || || ||| |||||||||||||||| || || || || ||||||||| Sbjct 71558 TCCTCCAGCTGCTTGCCCGCGAAGATGAGACGCTGCTGGTCTGGTGGGATACCCTCCTTG 71617 Query 118644 TCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACC 118703 || ||| || || || | || | || |||| ||||||||||| || | Sbjct 71618 TCCTGAATCTTGGCCTTCACGTTGTCAATTGTATCCGAAGACTCGACCTCGAGAGTGATG 71677 Query 118704 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 || |||||||| || || || || || ||||||||| Sbjct 71678 GTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATG 71713 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||| | || ||||| || || |||||||| ||| | ||||| |||||| Sbjct 71960 ACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCG 72019 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || || ||| | || || |||||||| || ||||| |||||||||||||| | Sbjct 72020 AGCTGCTTGCCGGCGAAAATCAGGCGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTGA 72079 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| |||||| | | ||||||||| | || | || ||| Sbjct 72080 ATCTTGGCCTTCACGTTGTCGATGGTGTCGGAGGACTCGACCTCAAGAGTGATGGTCTTG 72139 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| || || || || || |||||||| Sbjct 72140 CCGGTGAGGGTCTTGACGAAGATCTGCAT 72168 >seq757 Length=325751 Score = 118 bits (130), Expect = 9e-22 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||| | || ||||| || ||||||||||| ||| || ||||| |||||| Sbjct 30042 ACCAGGTGCAGGGTGGACTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCG 29983 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || ||||| |||| || |||||||| || || || |||||||||||||| Sbjct 29982 AGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGG 29923 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 ||||| || || | |||| |||||| | ||| ||||| | ||| | || ||| Sbjct 29922 ATTTTGGCCTTGACATTGTCGATGGTGTCGGATGACTCCACCTCAAGGGTGATAGTCTTG 29863 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 || || || || || || || ||||||||| Sbjct 29862 CCCGTGAGGGTCTTGACGAAGATCTGCATG 29833 >seq1933 Length=42650 Score = 93.3 bits (102), Expect = 4e-14 Identities = 131/184 (71%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 133222 GGTTGACCACTTGAAACTCGCCGGCGAGAACGCGTCTGAGATATACATTCGACGTGAACG 133281 |||||||||| || ||||| || ||||| || || | | || | || |||||| | | Sbjct 25625 GGTTGACCACCTGGAACTCACCAGCGAGCACACGCCGCTGGTAGATGTTGGACGTGTAGG 25684 Query 133282 GTTCGAAAGATTCGTTGTTGCCGAGTATCTGCGCCGTCGTCGCCGTGGGCATGTACGCCA 133341 | || || | ||||||||||| || ||||||| |||| || |||||||| ||||| Sbjct 25685 GCTCAAAGCACTCGTTGTTGCCCAGGATCTGCGAGGTCGAGGCAGTGGGCATAGGCGCCA 25744 Query 133342 CCAACAAAGAGTTTCTTACGCCGTACTTGTTTATGTTGCACTGCAATTCGTTCCAGTCCC 133401 |||||| ||| | ||||| | || || || ||| || || ||| |||||||| Sbjct 25745 TCAACAAGCTGTTGCGGACGCCATGCTGCTTGATCTTGGCCTTCAGGGCGTCCCAGTCCC 25804 Query 133402 ACAG 133405 | || Sbjct 25805 AGAG 25808 >seq1759 Length=81252 Score = 93.3 bits (102), Expect = 4e-14 Identities = 128/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 118551 TTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATG 118610 || || |||||||| ||| | |||||| |||||| ||||| || || ||| |||| Sbjct 66847 TTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAGATC 66906 Query 118611 AGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCG 118670 | |||||||| || || || |||||||||||||| || || ||||| | ||| Sbjct 66907 AATCGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTAACGTTGTCG 66966 Query 118671 ACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAA 118729 | |||||| | ||| ||||||| ||| | || ||||| ||||| || || || || Sbjct 66967 ATGGTGTCGGAAGACTCCACCTCGAGGGTGATAGTCTTGCCCGTCAGGGTCTTCACGAA 67025 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433818144020056