Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryphonectria_20radicalis_20[genbank_20GCA_5F002179595.1_202017-06-
08] 2,318 sequences; 41,022,676 total letters
Query= NC_002331.1
Length=178733
Score E
Sequences producing significant alignments: (Bits) Value
seq757 122 1e-22
seq1543 113 5e-20
seq1759 93.3 5e-14
>seq757
Length=325751
Score = 122 bits (134), Expect = 1e-22
Identities = 156/215 (73%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028
|||| |||| |||| ||| |||||| ||||| ||||| || | ||| || || ||
Sbjct 30048 CGCAGGACCAGGTGCAGGGTGGACTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCG 29989
Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088
|| || |||||||| ||||| || || || ||||||||||| | || | || |||||||
Sbjct 29988 TCCTCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCTGGGGGGATGCCCTCCTTG 29929
Query 43089 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 43148
||| |||||| |||| | | | |||||| || ||||| || | |||||
Sbjct 29928 TCCTGGATTTTGGCCTTGACATTGTCGATGGTGTCGGATGACTCCACCTCAAGGGTGATA 29869
Query 43149 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
|| |||||||| || ||||| || ||||| |||||
Sbjct 29868 GTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 29834
>seq1543
Length=161075
Score = 113 bits (124), Expect = 5e-20
Identities = 167/234 (71%), Gaps = 2/234 (1%)
Strand=Plus/Plus
Query 42951 TATTGTCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAA 43010
|| ||||| || | | ||||| |||||| |||| || |||||| ||||| |||||
Sbjct 71480 TACTGTCCACCACGCAGACGCAGCACCAAGTGCAGCGTCGACTCCTTCTGAATGTTGTAG 71539
Query 43011 TCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCG 43070
|| | || ||||| | || || |||||||| || ||||| ||||| |||||||||||
Sbjct 71540 TCTGAGAGTGTCCGGCCATCCTCCAGCTGCTTGCCCGCGAAGATGAGACGCTGCTGGTCT 71599
Query 43071 GCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGA 43129
| || | | |||||||||| ||| | || | | ||| | | | || || ||
Sbjct 71600 GGTGGGATACCCTCCTTGTCC-TGAATCTTGGCCTTCACGTTGTCAATTGTATCCGAAGA 71658
Query 43130 TTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
|| || |||| |||||||| ||||| || || ||||| || ||||| |||||
Sbjct 71659 CTCGACCTCGAGAGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 71712
Score = 107 bits (118), Expect = 2e-18
Identities = 141/193 (73%), Gaps = 2/193 (1%)
Strand=Plus/Plus
Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051
|||||| || || ||||| || | || || || |||| || |||||||| ||||| ||
Sbjct 71749 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTACGGCCGTCCTCGAGCTGCTTTCCAGCAAA 71808
Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111
||||| ||||||||||| | || | | |||||||||| ||| | || | | |||
Sbjct 71809 GATGAGGCGCTGCTGGTCTGGGGGGATACCCTCCTTGTCC-TGAATCTTGGCCTTCACGT 71867
Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170
| | | |||||| || || || |||| |||||||| ||||| || |||||||| |
Sbjct 71868 TGTCGATGGTGTCGGAGGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGCGTCTTGA 71927
Query 43171 CAAAGATTTGCAT 43183
| ||||| |||||
Sbjct 71928 CGAAGATCTGCAT 71940
Score = 100 bits (110), Expect = 3e-16
Identities = 150/209 (72%), Gaps = 3/209 (1%)
Strand=Plus/Plus
Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051
|||||| || || ||||| || | || || || |||| || |||||||| || |||||
Sbjct 71977 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 72036
Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111
|| || ||||||||||| | || | || |||||||||| ||| | || | | |||
Sbjct 72037 AATCAGGCGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCC-TGAATCTTGGCCTTCACGT 72095
Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170
| | | |||||| || || || || | |||||||| ||||| || || ||||| |
Sbjct 72096 TGTCGATGGTGTCGGAGGACTCGACCTCAAGAGTGATGGTCTTGCCGGTGAGGGTCTTGA 72155
Query 43171 CAAAGATTTGCATTTTTAC-GCCGAATAC 43198
| ||||| ||||| || || | |||| ||
Sbjct 72156 CGAAGATCTGCATCTTGACTGACGAAGAC 72184
>seq1759
Length=81252
Score = 93.3 bits (102), Expect = 5e-14
Identities = 132/183 (72%), Gaps = 2/183 (1%)
Strand=Plus/Plus
Query 42994 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 43053
|||| || || ||||| || | ||||| || | || || |||||||| || ||||| |
Sbjct 66845 CCTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAGA 66904
Query 43054 TGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG 43113
| | |||||||||||| | || | || |||||||||| || | || | | | ||| |
Sbjct 66905 TCAATCGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCC-TGGATCTTGGCCTTAACGTTG 66963
Query 43114 -CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 43172
| | |||||| || ||||| |||| ||||| || |||||||| || ||||| ||
Sbjct 66964 TCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATAGTCTTGCCCGTCAGGGTCTTCACG 67023
Query 43173 AAG 43175
|||
Sbjct 67024 AAG 67026
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 571801031585040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |