Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryphonectria_20radicalis_20[genbank_20GCA_5F002179595.1_202017-06- 08] 2,318 sequences; 41,022,676 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq1543 136 3e-27 seq757 123 2e-23 seq1759 91.5 1e-13 >seq1543 Length=161075 Score = 136 bits (150), Expect = 3e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||| ||||| | || |||||||| | || || ||||| |||||||||||||| Sbjct 71942 CCGCCACGCAGACGGAGGACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 72001 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| |||| || | ||||||||| |||||||| || ||||||||||| || Sbjct 72002 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAAATCAGGCGCTGCTGGTCAGGAGGG 72061 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||||||| ||||| ||| | | | | || | |||| || ||||| Sbjct 72062 ATGCCCTCCTTGTCCTGAATCTTGGCCTTCACGTTGTCGATGGTGTCGGAGGACTCGACC 72121 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || | |||||||| ||||||||||| || || || |||||||||||| Sbjct 72122 TCAAGAGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATC 72169 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || ||||| || | || || ||||| | |||| || ||||| |||||||||||||| Sbjct 71714 CCACCGCGGAGGCGAAGGACGAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAG 71773 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || |||| |||| || | |||||| || || || ||||| ||||||||||| ||| Sbjct 71774 AGGGTACGGCCGTCCTCGAGCTGCTTTCCAGCAAAGATGAGGCGCTGCTGGTCTGGGGGG 71833 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | ||||||||| ||||| ||| | | | | || | |||| || ||||| Sbjct 71834 ATACCCTCCTTGTCCTGAATCTTGGCCTTCACGTTGTCGATGGTGTCGGAGGACTCGACC 71893 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||||| ||||||||||| || || || ||||||||||| Sbjct 71894 TCGAGGGTGATGGTCTTGCCGGTGAGCGTCTTGACGAAGATCTGCAT 71940 Score = 127 bits (140), Expect = 1e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || ||||| | |||||||| ||| | || || ||||| ||||||||||| || Sbjct 71485 TCCACCACGCAGACGCAGCACCAAGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCTGA 71544 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 || ||| | || |||| ||||||||| ||||| ||||| ||||||||||| || Sbjct 71545 GAGTGTCCGGCCATCCTCCAGCTGCTTGCCCGCGAAGATGAGACGCTGCTGGTCTGGTGG 71604 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | ||||||||| ||||| ||| | | | | || | ||| | || ||||| Sbjct 71605 GATACCCTCCTTGTCCTGAATCTTGGCCTTCACGTTGTCAATTGTATCCGAAGACTCGAC 71664 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||||| ||||||||||| || || || ||||||||||| Sbjct 71665 CTCGAGAGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 71712 >seq757 Length=325751 Score = 123 bits (136), Expect = 2e-23 Identities = 166/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | ||| |||||||| | || || ||||| ||||||||||||||| Sbjct 30060 CCACCACGCAGGCGCAGGACCAGGTGCAGGGTGGACTCCTTCTGAATGTTGTAGTCGGAC 30001 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| |||| || | ||||||||| || || || || ||||||||||| ||| Sbjct 30000 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCTGGGGGG 29941 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTG--CTTTAGATCGGCTATCGAATCGGTCGATTCGA 34340 | || ||||||||| || ||||| ||| | || | | || | |||| || || | Sbjct 29940 ATGCCCTCCTTGTC--CTGGATTTTGGCCTTGACATTGTCGATGGTGTCGGATGACTCCA 29883 Query 34341 CGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 | || | ||||| || ||||| ||||| || || || ||||||||||| Sbjct 29882 CCTCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 29834 >seq1759 Length=81252 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 34187 TGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGC 34246 |||| | |||| | ||||| |||||||||||||| || ||| | || || | |||| Sbjct 66832 TGTACACTACTGACCTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCATCCTCAAGCTGC 66891 Query 34247 TTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTT 34306 ||||| ||||| || | ||||||||||| ||| | || ||||||||| ||||| Sbjct 66892 TTGCCGGCGAAGATCAATCGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCCTGGATCTTG 66951 Query 34307 TGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTG 34366 ||| | | | | || | |||| || || || || | ||||| || ||||| || Sbjct 66952 GCCTTAACGTTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATAGTCTTGCCCGTC 67011 Query 34367 AGAGTTTTCACAAAG 34381 || || ||||| ||| Sbjct 67012 AGGGTCTTCACGAAG 67026 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323062873014080