Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryphonectria_20radicalis_20[genbank_20GCA_5F002179595.1_202017-06-
08] 2,318 sequences; 41,022,676 total letters
Query= NC_002687.1
Length=335593
Score E
Sequences producing significant alignments: (Bits) Value
seq1788 136 8e-27
seq1090 98.7 2e-15
seq1 87.8 4e-12
>seq1788
Length=305454
Score = 136 bits (150), Expect = 8e-27
Identities = 275/399 (69%), Gaps = 22/399 (6%)
Strand=Plus/Minus
Query 254001 CTTCCTCATTTGCTTTTCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCATCCTGGCG 254060
|| || ||| |||| || |||| || |||||||| |||||||| || || ||||| ||
Sbjct 86991 CTACCACATATGCTCTTTTACGGCCCGCCCGGAACTGGCAAGACCTCTACGATCCTTGCC 86932
Query 254061 CTGGCCCGAACCCTGTTGGGCGAGGGGAAC--ATGAGAGAGCGCGTGCTCGAGCTGAACG 254118
|| ||| || | || | ||| |||| ||||||| |||||||| ||||
Sbjct 86931 CTCGCCAAGGAGCTCTACGG--ACCCGAATTTATGAAGCAGCGCGTCCTCGAGCTCAACG 86874
Query 254119 CTTCTGACGAACGCGGGTTGGACGTCGTCCGCGACAAGATCAA-GACTTT-CTC-CA--- 254172
| || ||||| ||||| | | ||||||| || || |||| |||||| | | ||
Sbjct 86873 CCTCCGACGAGCGCGGCATCTCCATCGTCCGAGAGAAAGTCAAAGACTTTGCGCGCATGC 86814
Query 254173 AGATGTCGAT---TTCGTC--GTTCCAAC--CCGG-----CTGTCCGCCTTTCAAGCTCG 254220
|| || ||| | || | | | ||| ||| ||| ||||| |||||| ||
Sbjct 86813 AGCTGACGAGCCCTCCGCCCGGCTACAAGGACCGCTACCCCTGCCCGCCCTTCAAGATCA 86754
Query 254221 TGATCCTGGACGAGGCGGACACCATGACGGCCGACGCGCAGTCCGCCCTCCGCCGAACGA 254280
| ||||| |||||||| || | ||||||| || || ||| || || ||||||||||
Sbjct 86753 TCATCCTCGACGAGGCCGATAGCATGACGCAGGATGCACAGAGTGCGCTGCGCCGAACGA 86694
Query 254281 TGGAGACGCACTCCGTTGTGACGCGTTTTTGCCTGGTGTGCAACTACGTGTCGAAGATCA 254340
||||||| || | | ||||| || || ||| | ||||||||||| || ||||
Sbjct 86693 TGGAGACATACAGCAAGATCACGCGGTTCTGTCTGATCTGCAACTACGTCACGCGCATCA 86634
Query 254341 TCGCCCCGCTGGCTTCTCGGTGCGCCAAGTTTCGATTCA 254379
||| ||||||||| | ||||| ||||||||| ||||
Sbjct 86633 TCGACCCGCTGGCGAGTAGGTGCAGCAAGTTTCGCTTCA 86595
>seq1090
Length=78572
Score = 98.7 bits (108), Expect = 2e-15
Identities = 125/172 (73%), Gaps = 0/172 (0%)
Strand=Plus/Minus
Query 254000 CCTTCCTCATTTGCTTTTCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCATCCTGGC 254059
|||||| || | ||| || |||| || || || || |||||||| || |||||||| ||
Sbjct 30365 CCTTCCCCACCTCCTTCTCTACGGGCCCCCGGGCACGGGCAAGACCTCCACCATCCTCGC 30306
Query 254060 GCTGGCCCGAACCCTGTTGGGCGAGGGGAACATGAGAGAGCGCGTGCTCGAGCTGAACGC 254119
|| ||||| | | | || | | ||||||| | || |||||||||||||| ||
Sbjct 30305 CCTCGCCCGCCGCATCTATGGGGCCGAGAACATGCGCCAGATGGTGCTCGAGCTGAATGC 30246
Query 254120 TTCTGACGAACGCGGGTTGGACGTCGTCCGCGACAAGATCAAGACTTTCTCC 254171
|| ||||| ||||| | ||||| || ||||| | |||||||| ||| ||
Sbjct 30245 CTCCGACGACCGCGGCATCGACGTTGTGCGCGAGCAAATCAAGACGTTCGCC 30194
>seq1
Length=275753
Score = 87.8 bits (96), Expect = 4e-12
Identities = 133/187 (71%), Gaps = 2/187 (1%)
Strand=Plus/Minus
Query 115371 CTGCGCGTC-GTCAACTTTCGAAAACCTTAATATCGCACATCTGCTCTGAATCGGTTCGA 115429
||||||||| |||||| | || ||| | |||||||| | | ||| | ||| ||||
Sbjct 217578 CTGCGCGTCCGTCAACCT-CGCGTACCGCAGGATCGCACACCGGGACTGCAGCGGCTCGA 217520
Query 115430 TGATTTTGGTGGAGTTGTTGCAGACTATGATGAACCGCGTCGTGCTCGAGTAAACATCCA 115489
|||| ||| |||| | |||||| | | | ||| ||||| ||| | ||||| | ||||
Sbjct 217519 TGATCTTGTTGGACTGGTTGCATGCGAAGGCGAAGCGCGTGGTGTTGGAGTAGATCTCCA 217460
Query 115490 TGATCCGTCGCAGCGCCTGGAAAGCACCAGGTGTCATCGAGTCTGCCTCGTCGAGAACGA 115549
| |||| ||||| ||||| || || ||||| ||| ||||||||||| | ||
Sbjct 217459 TCGTCCGCCGCAGTGCCTGCTGCGCGCCGCTCGTCATGCTGTCGGCCTCGTCGAGGATGA 217400
Query 115550 CAATCTT 115556
| |||||
Sbjct 217399 CGATCTT 217393
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1073734509809024
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |