Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryphonectria_20radicalis_20[genbank_20GCA_5F002179595.1_202017-06- 08] 2,318 sequences; 41,022,676 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq1788 136 8e-27 seq1090 98.7 2e-15 seq1 87.8 4e-12 >seq1788 Length=305454 Score = 136 bits (150), Expect = 8e-27 Identities = 275/399 (69%), Gaps = 22/399 (6%) Strand=Plus/Minus Query 254001 CTTCCTCATTTGCTTTTCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCATCCTGGCG 254060 || || ||| |||| || |||| || |||||||| |||||||| || || ||||| || Sbjct 86991 CTACCACATATGCTCTTTTACGGCCCGCCCGGAACTGGCAAGACCTCTACGATCCTTGCC 86932 Query 254061 CTGGCCCGAACCCTGTTGGGCGAGGGGAAC--ATGAGAGAGCGCGTGCTCGAGCTGAACG 254118 || ||| || | || | ||| |||| ||||||| |||||||| |||| Sbjct 86931 CTCGCCAAGGAGCTCTACGG--ACCCGAATTTATGAAGCAGCGCGTCCTCGAGCTCAACG 86874 Query 254119 CTTCTGACGAACGCGGGTTGGACGTCGTCCGCGACAAGATCAA-GACTTT-CTC-CA--- 254172 | || ||||| ||||| | | ||||||| || || |||| |||||| | | || Sbjct 86873 CCTCCGACGAGCGCGGCATCTCCATCGTCCGAGAGAAAGTCAAAGACTTTGCGCGCATGC 86814 Query 254173 AGATGTCGAT---TTCGTC--GTTCCAAC--CCGG-----CTGTCCGCCTTTCAAGCTCG 254220 || || ||| | || | | | ||| ||| ||| ||||| |||||| || Sbjct 86813 AGCTGACGAGCCCTCCGCCCGGCTACAAGGACCGCTACCCCTGCCCGCCCTTCAAGATCA 86754 Query 254221 TGATCCTGGACGAGGCGGACACCATGACGGCCGACGCGCAGTCCGCCCTCCGCCGAACGA 254280 | ||||| |||||||| || | ||||||| || || ||| || || |||||||||| Sbjct 86753 TCATCCTCGACGAGGCCGATAGCATGACGCAGGATGCACAGAGTGCGCTGCGCCGAACGA 86694 Query 254281 TGGAGACGCACTCCGTTGTGACGCGTTTTTGCCTGGTGTGCAACTACGTGTCGAAGATCA 254340 ||||||| || | | ||||| || || ||| | ||||||||||| || |||| Sbjct 86693 TGGAGACATACAGCAAGATCACGCGGTTCTGTCTGATCTGCAACTACGTCACGCGCATCA 86634 Query 254341 TCGCCCCGCTGGCTTCTCGGTGCGCCAAGTTTCGATTCA 254379 ||| ||||||||| | ||||| ||||||||| |||| Sbjct 86633 TCGACCCGCTGGCGAGTAGGTGCAGCAAGTTTCGCTTCA 86595 >seq1090 Length=78572 Score = 98.7 bits (108), Expect = 2e-15 Identities = 125/172 (73%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 254000 CCTTCCTCATTTGCTTTTCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCATCCTGGC 254059 |||||| || | ||| || |||| || || || || |||||||| || |||||||| || Sbjct 30365 CCTTCCCCACCTCCTTCTCTACGGGCCCCCGGGCACGGGCAAGACCTCCACCATCCTCGC 30306 Query 254060 GCTGGCCCGAACCCTGTTGGGCGAGGGGAACATGAGAGAGCGCGTGCTCGAGCTGAACGC 254119 || ||||| | | | || | | ||||||| | || |||||||||||||| || Sbjct 30305 CCTCGCCCGCCGCATCTATGGGGCCGAGAACATGCGCCAGATGGTGCTCGAGCTGAATGC 30246 Query 254120 TTCTGACGAACGCGGGTTGGACGTCGTCCGCGACAAGATCAAGACTTTCTCC 254171 || ||||| ||||| | ||||| || ||||| | |||||||| ||| || Sbjct 30245 CTCCGACGACCGCGGCATCGACGTTGTGCGCGAGCAAATCAAGACGTTCGCC 30194 >seq1 Length=275753 Score = 87.8 bits (96), Expect = 4e-12 Identities = 133/187 (71%), Gaps = 2/187 (1%) Strand=Plus/Minus Query 115371 CTGCGCGTC-GTCAACTTTCGAAAACCTTAATATCGCACATCTGCTCTGAATCGGTTCGA 115429 ||||||||| |||||| | || ||| | |||||||| | | ||| | ||| |||| Sbjct 217578 CTGCGCGTCCGTCAACCT-CGCGTACCGCAGGATCGCACACCGGGACTGCAGCGGCTCGA 217520 Query 115430 TGATTTTGGTGGAGTTGTTGCAGACTATGATGAACCGCGTCGTGCTCGAGTAAACATCCA 115489 |||| ||| |||| | |||||| | | | ||| ||||| ||| | ||||| | |||| Sbjct 217519 TGATCTTGTTGGACTGGTTGCATGCGAAGGCGAAGCGCGTGGTGTTGGAGTAGATCTCCA 217460 Query 115490 TGATCCGTCGCAGCGCCTGGAAAGCACCAGGTGTCATCGAGTCTGCCTCGTCGAGAACGA 115549 | |||| ||||| ||||| || || ||||| ||| ||||||||||| | || Sbjct 217459 TCGTCCGCCGCAGTGCCTGCTGCGCGCCGCTCGTCATGCTGTCGGCCTCGTCGAGGATGA 217400 Query 115550 CAATCTT 115556 | ||||| Sbjct 217399 CGATCTT 217393 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073734509809024