Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryphonectria_20radicalis_20[genbank_20GCA_5F002179595.1_202017-06- 08] 2,318 sequences; 41,022,676 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq1933 360 2e-94 seq1567 143 2e-29 seq757 107 2e-18 seq1543 95.1 1e-14 seq1759 82.4 7e-11 >seq1933 Length=42650 Score = 360 bits (398), Expect = 2e-94 Identities = 1235/1904 (65%), Gaps = 52/1904 (3%) Strand=Plus/Plus Query 22105 CTTGTCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATGCC 22164 || ||| ||||| ||||| || | | ||| |||| | |||||| || || |||||||| Sbjct 25278 CTGGTCGACTGTGAACTGAATCGGGGCTGCCGCCGCCTGGGTGCGGAGGTAGTACATGCC 25337 Query 22165 CGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTCGG 22224 ||||| ||||||| |||||| || || || || ||| | || || | || Sbjct 25338 AGTCTTGAGACCCAGCTTCCATCCGGTGAAGTGCATGCTCGTGATCTTGCCCATAGAAGG 25397 Query 22225 --CAAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCG 22282 || | ||||| | || | |||||| ||| ||||| || || || || |||||| Sbjct 25398 TTCACG--CATGTGGATGTTCAGGGACTGAGACTGGTCGATGAAAGCGCCACGGTCGGCG 25455 Query 22283 GCCATATTTATCAATGTACGCATCGACATTTCCCATACGGTCTTGTACAGTTGCCTGATC 22342 ||||| | | | || | | ||| || ||||| ||||||||||| || | |||| Sbjct 25456 GCCATCTGGACGATGGTCCTCTGCGAGATCTCCCAGACGGTCTTGTAGAGGGCCTTGATA 25515 Query 22343 TCTAACGGTATCGATTCGA-TCCTCTGGACGGACCCGTTATTGTGTATGATCAAATTTTT 22401 || ||| || | | ||| | |||||| || || | | | ||||| || || Sbjct 25516 TCATCCGGGAT-GCTGCGAATGTTCTGGATAGAACCATCCTCGGCGATGATGCGGTTCTT 25574 Query 22402 AATCGTATCGTTCCACAAACCGATGGCGGTCAAA-TCTTTGACCAG--ATGACGGTTCAC 22458 | ||| ||||| ||| | | ||| || |||| ||| ||| |||| || Sbjct 25575 CAGGTCCTCGGACCACAGACC-ACACTGCACAAGGTCCTTGAGCAGCCATG--GGTTGAC 25631 Query 22459 CACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAA 22518 ||| || ||||| || | | || || || ||||| |||||||| ||| | || || || Sbjct 25632 CACCTGGAACTCACCAGCGAGCACACGCCGCTGGTAGATGTTGGACGTGTAGGGCTCAAA 25691 Query 22519 AGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAG 22578 | || ||||| ||||| ||||| | |||||| || || ||||| ||||||| || | Sbjct 25692 GCACTCGTTGTTGCCCAGGATCTGCGAGGTCGAGGCAGTGGGCATAGGCGCCATCAACAA 25751 Query 22579 CGAGTTTCTCAAGCCGTGCT--TTGAAATTTTACTCTTGAGCATCGACCAGTCCCACAGA 22636 ||| | | ||| |||| |||| || || | || || ||||||||| || Sbjct 25752 GCTGTTGCGGACGCCATGCTGCTTGATCTTGGCCTTCAGGGCGTC--CCAGTCCCAGAGG 25809 Query 22637 TCGGACGGCGTCACATTGTCCCACATATCGTATTGCA--ACACGCCGCGACTCGCCGGGC 22694 || || ||| | || ||||||||||| ||||| || | | || | | || || | | Sbjct 25810 TCCGAGGGCTTGACGTTGTCCCACATGTCGTACTGAAGGATACCCTGAGAAACGG-GAGA 25868 Query 22695 TGCCTTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCTCGCCTCCAACG 22754 | ||| |||||| ||| ||||| | | | ||||| ||||| || | | Sbjct 25869 TCCCT-CGTACGACAAGTAGGGACCGTCCACCTTGGCAATGTCGCACGATGCGGTGAGGG 25927 Query 22755 CGCCGTAATATATAGTCTCGAAGATTTTCTTGTTCAATTCGGCGGC----GGCGACGCTT 22810 || ||| || || ||||| ||||| | |||||||| | ||| |||||| Sbjct 25928 CGGCGTGGTAGATGGTCTCAAAGATCTGCTTGTTCAGCTGACGGGCCTCAGGCGAC---- 25983 Query 22811 TCGTACGGCATACGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATC 22870 ||| | |||| || | || ||| || || |||| |||||||||||| | ||||| Sbjct 25984 TCGAAGGGCAGGCGGAGAGCCAAGAAGGCATCAGCCAGACCCTGAACGCCCACGCCGATA 26043 Query 22871 GGTCGGTTTTTCAGATTCGACACTTTTGC----CTCGGGCAAAGGATACCAATTCGAATC 22926 || |||| || || || |||| ||| | | |||||| | || ||| Sbjct 26044 GGGCGGTGGCGCATGTTG----CTGTTGCGAGCCTCCTGGACAGGATAGTAGTTGATATC 26099 Query 22927 GATTGTTCTGTTCAAGTTTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTC 22986 || | |||||| ||| | | |||| || || | | |||| Sbjct 26100 GACGATCTTGTTCAGGTTGCGGACGACAACTTGGGTGACTTCGTGCAGCAGCTGGAAGTT 26159 Query 22987 GTAAACGCCCG----ATTGTACAACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATA 23042 ||| | | || || | || |||| | |||||| || || || ||||| | Sbjct 26160 GTAGCAGTCGTTCTCATAGT-CGACGAACTGAGGCAGGGCGATGGACGCCAGGTTGCAGA 26218 Query 23043 CGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTA 23102 | || |||||||| || | |||||| | || || || || || ||| | | Sbjct 26219 CAGCAACCTCGTCAGGGGCAGAGTACTCGATGATCTCCGTGCAGAGGTTGGAGCTGCGGA 26278 Query 23103 TCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACG 23162 | ||||||| || |||||||||| || || ||| |||||||| |||||| | | Sbjct 26279 TGGTGCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGTGGTCCTTGTACAGCATGAATG 26338 Query 23163 GCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACAC 23222 | |||| |||||| ||||| ||||| ||| || ||||| |||| || | | | Sbjct 26339 GGTTGCCGGTCTCGGTCTGCGCCTCGAGGATGGCATACCACAGCTTCTGTGCCTTCA-AG 26397 Query 23223 GTCGCACGTACCTG-CCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCG 23281 ||| | | | || || ||| ||||| | |||||| || || || || | ||| Sbjct 26398 GTCTTCTGGCCGCGACCCTCGCGCTCATACTTCTCGTACAAGGCCTCGAACTCCTCGCCG 26457 Query 23282 TAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATTT 23341 || ||||||||||||||||| | | | || ||||| || |||| || || Sbjct 26458 TAGCAGTCGGCCAGGCCGGGACACTCGTTGGGGCACATAAGGGTCCAGTCGCCGTTCTTC 26517 Query 23342 TCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGC 23401 || || || |||| || ||||| || ||||| || || ||| || || || || || Sbjct 26518 TCCACACGCTTCATGAAGAGATCAGGGATCCAGAGGGCCAGGAAGAGGTCACGAGCACGG 26577 Query 23402 ACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCAC 23461 ||||| || || ||| |||||| || || | || || || || || || |||||| Sbjct 26578 ACCTCTTCCTTTCCGTGGTTCTTGCGCAGGTCGAGGAACTCGAAGACATCAGCGTGCCAC 26637 Query 23462 GGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGG 23521 ||||| ||||| | |||||| || || || | ||| ||||| ||||| |||||||| || Sbjct 26638 GGCTCCAGGTAGATGGCAAAGGCACCGGGGCGCTTGTTGCCACCCTGGTCGACGTAGCGA 26697 Query 23522 GCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCC 23581 || ||||||||| | || | ||||| || | || || || |||| |||| ||| Sbjct 26698 GCAGTGTTGTTGAAGACACGCAGCATGGGGATGATGCCATTAGACGTGCCGTTGGTGCCG 26757 Query 23582 GCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGAT 23641 || | | || || | || || | | ||| || | || ||| ||||||||| || Sbjct 26758 GCAATATAGGAGCCAGTGGCACGGATGCGGTGGACATTGAGACCAATGCCTCCGGCCATC 26817 Query 23642 TTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTG 23701 || || ||||| || || || || ||||| ||||| ||||||||||| ||||| || Sbjct 26818 TTGGAGATCATGGCACAGGTCTTGAGGGTGTCATAGATACCCTCGATGCTATCCTCCTTC 26877 Query 23702 GTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTC 23761 | | || | ||| ||||| |||| || || | ||||| |||| ||| || ||| Sbjct 26878 ATGTCCACTAGGAAGCACGATGACAGCTGTGCCTGAGGCGTGCCGGCGTTGAATAGAGTC 26937 Query 23762 GGGCTGGCGTGCGTAAAGTATCCATTCGACA-TTAGATTGTACGTGTCGATGGCGGCATC 23820 || ||||| || ||| | || || | ||| ||||| || || | | || Sbjct 26938 GGCGAAGCGTGTGTGAAGAACTTGTTGGAGAGGTAG-TTGTAGGTCTCCAGAACCCTCTC 26996 Query 23821 AATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGAC 23880 |||| ||||| || || | |||||| ||||||| ||||| || || | |||||| Sbjct 26997 GATGTTGTCTCCCCAGATGCCAACGGCGACACGCATCAGCATGTGCTGTGGCCGCTCGAC 27056 Query 23881 CGTGAC---GCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATA 23937 ||| |||||| | |||| ||||| || || | || || || || || || || Sbjct 27057 ---GACCTTGCCGTTGAGCTTGAGGAGATACGAGCGCTCCAGGGTCTTGAAGCCGAAGTA 27113 Query 23938 GTCATAGTTAAAGTCACGATCGTGCACTATGGCCGAATTCAAAC 23981 | || | |||| || || | || ||||||| | |||||| Sbjct 27114 TTGGTATTGGTAGTCTCGGTCATAGACGATGGCCG-AGTCAAAC 27156 >seq1567 Length=91444 Score = 143 bits (158), Expect = 2e-29 Identities = 298/439 (68%), Gaps = 6/439 (1%) Strand=Plus/Plus Query 57958 CCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCA 58017 |||| | ||| || | || |||| ||||| |||||||| ||||| ||||| ||| Sbjct 45141 CCACCTACGCGCAGCGCCTTGTCGCATTCGCTGCCGTCGAGGGTATCTTCTTCAGCGGCG 45200 Query 58018 GCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCA 58077 ||| || | || || ||| | ||||| || ||||||||||| || ||||| || || Sbjct 45201 CCTTCGCCTCCATCTTCTGGCTCAAGAAGCGTGGCCTGATGCCTGGTCTGACCTTCTCCA 45260 Query 58078 ACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTC 58137 ||||| |||| || || ||||||||||| |||||||| || || ||||| ||| ||| | Sbjct 45261 ACGAGCTGATCTCTCGTGACGAGGGTCTACATACTGACTTCGCCTGCCTGCTGTTCTCCC 45320 Query 58138 ACATTGTCAATAAACCGACGCGGGATCGCATCTTGGACATTATCACCGAGGCGGTCGCGA 58197 || | ||| || | | | ||| | || || ||||| || || || | | Sbjct 45321 ACCTGAACAACCGGCCCAGCAAGCAGCGCGTAGAGGCTATCATCACGGATGCCGTTGTCA 45380 Query 58198 TCGAAAATGAGTTTGTCACCGAAGCCCT-ACCGGTGGCCATGCTCGGTATGAACAATGAT 58256 | || || ||||| | || || ||||| || |||||| ||||||| |||||| Sbjct 45381 TTGAGAAGGAGTTCCTGACTGAGGCCCTGCCCTGTGGCC-TGCTCGGCATGAACGCCACC 45439 Query 58257 TTGATGTCAAAGTACATTGAGTTTGTTGCCGACAGACTTTTGCTCGAACT--GATTGGAG 58314 ||||| ||||||||||||| || |||||| | || | ||| || | ||| Sbjct 45440 CTGATGAAGCAGTACATTGAGTTCGTCGCCGACCGTCTCCTCGTCGCCCTCGGCAACGAG 45499 Query 58315 AGCGTCATTACAACACGAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCA 58374 | ||| ||||| | || || || || || ||| | ||||| || | |||| Sbjct 45500 AAGGTC--TACAAGTCTTCCAACCCCTTCGACTTCATGGAGAACATCTCCCTTGGCGGCA 45557 Query 58375 AGACAAACTTTTTCGAAAA 58393 |||| ||||| ||||| || Sbjct 45558 AGACCAACTTCTTCGAGAA 45576 >seq757 Length=325751 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| || || ||||| || |||||| | || || || | || Sbjct 29833 CATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCATC 29892 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||||| |||| | ||||| | ||| ||||||||| ||| | || || ||||| Sbjct 29893 CGACACCATCGACAATGTCAAGGCCAAAATCCAGGACAAGGAGGGCATCCCCCCAGACCA 29952 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||||| || || || |||||||| ||| | || ||| || || ||| || || Sbjct 29953 GCAGCGCCTGATCTTTGCTGGCAAGCAGCTCGAGGACGGCCGCACCCTGTCCGACTACAA 30012 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 |||||| || || || || || || ||||| || | ||| | || ||| Sbjct 30013 CATTCAGAAGGAGTCCACCCTGCACCTGGTCCTGCGCCTGCGTGGTGGT 30061 >seq1543 Length=161075 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| || ||||| ||||| || || ||||| || ||||| | || || || | Sbjct 72171 AAGATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACTCTTGAGGTCGAGTCC 72112 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 ||||||| |||| | || || | || ||||||||| ||| | || || ||| Sbjct 72111 TCCGACACCATCGACAACGTGAAGGCCAAGATTCAGGACAAGGAGGGCATCCCTCCTGAC 72052 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 |||||||| || || ||||| ||||| ||| | || ||| || | ||| || Sbjct 72051 CAGCAGCGCCTGATTTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTAC 71992 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||| || || || || || ||||| ||||| || | ||| | ||||||| Sbjct 71991 AACATCCAGAAGGAGTCCACCCTTCACCTGGTCCTCCGTCTGCGTGGCGGTA 71940 Score = 82.4 bits (90), Expect = 7e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| || || ||||| || |||||| |||| || || | ||| Sbjct 71940 ATGCAGATCTTCGTCAAGACGCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCCTCC 71881 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | || || | || ||||||||| || | || || |||||| Sbjct 71880 GACACCATCGACAACGTGAAGGCCAAGATTCAGGACAAGGAGGGTATCCCCCCAGACCAG 71821 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| || || || ||||| || ||| | || ||| || | ||| || ||| Sbjct 71820 CAGCGCCTCATCTTTGCTGGAAAGCAGCTCGAGGACGGCCGTACCCTCTCCGACTACAAC 71761 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 || || || || || ||||| || || || ||| Sbjct 71760 ATCCAGAAGGAGTCTACTCTCCACCTCGTCCTT 71728 >seq1759 Length=81252 Score = 82.4 bits (90), Expect = 7e-11 Identities = 108/147 (73%), Gaps = 2/147 (1%) Strand=Plus/Minus Query 31202 TTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTC 31261 ||||| ||||| ||||| ||||| || |||||| |||| || || | ||||||| || Sbjct 67025 TTCGTGAAGACCCTGACGGGCAAGACTATCACCCTCGAGGTGGAGTCTTCCGACACCATC 66966 Query 31262 GA-AACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCT 31320 || |||| | | | ||| | ||||||||| ||| | || || ||||||||||| | Sbjct 66965 GACAACGTTAAGGCCAAGA-TCCAGGACAAGGAGGGCATTCCCCCTGACCAGCAGCGATT 66907 Query 31321 AATATTCGCTGGCAAACAGTTGGAAGA 31347 || ||||| ||||| ||| | || || Sbjct 66906 GATCTTCGCCGGCAAGCAGCTTGAGGA 66880 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445753483918560