Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryphonectria_20radicalis_20[genbank_20GCA_5F002179595.1_202017-06-
08] 2,318 sequences; 41,022,676 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq1933 158 2e-33
seq1567 104 3e-17
>seq1933
Length=42650
Score = 158 bits (174), Expect = 2e-33
Identities = 389/582 (67%), Gaps = 20/582 (3%)
Strand=Plus/Plus
Query 63222 GGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAG 63281
||||| || | || ||||| | | ||| || |||| | || ||| || ||||| |||
Sbjct 26476 GGACACTCGTTGGGGCACATAAGGGTCCAGTCGCCGTTCTTCTCCACACGCTTCATGAAG 26535
Query 63282 AGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTA 63341
|||||||| ||||| || || | || || || | | | || || |||||
Sbjct 26536 AGATCAGGGATCCAGAGGGCCAGGAAGAGGTCACGAGCACGGACCTCTTCCTTTCCGTGG 26595
Query 63342 TTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCC 63401
||||| || ||||||||| | | | ||||| |||||||| |||| ||| |||||
Sbjct 26596 TTCTTGCGCAGGTCGAGGAACTCGAAGACATCAGCGTGCCACGGCTCCAGGTAGATGGCA 26655
Query 63402 ATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACT 63461
| | || || || ||||| || ||||| || | ||| | ||| ||||| || | ||
Sbjct 26656 AAGGCACCGGGGCGCTTGTTGCCACCCTGGTCGACGTAGCGAGCAGTGTTGTTGAAGACA 26715
Query 63462 CTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTG 63521
| || ||| || || || || || || | || ||||| |||| |||||| ||| ||
Sbjct 26716 CGCAGCATGGGGATGATGCCATTAGACGTGCCGTTGGTGCCGGCAATATAGGAGCCAGTG 26775
Query 63522 GCACGAATAT--TACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGC 63579
||||| || | ||||| |||| || || || ||||| || ||||| | || |
Sbjct 26776 GCACGGATGCGGTGGACATTGA--GACCAATGCCTCCGGCCATCTTGGAGATCATGGCAC 26833
Query 63580 ATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAAC 63639
| || | ||||||||||| || || |||||||| || |||||| | ||| || |
Sbjct 26834 AGGTCTTGAGGGTGTCATAGATACCCTCGATGCTATCCTCCTTCATGTCCACTAGGAAGC 26893
Query 63640 AGCTAGACATTTGGTGAC-GAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTA 63698
| |||| | ||| | ||| || || || || |||| || || |||||||| ||
Sbjct 26894 ACGATGACAGCT-GTGCCTGAGGCGTGCCGGCGTTGAATAGAGTCGGCGAAGCGTGTGTG 26952
Query 63699 AACCATTTTTCAGA-AAGTAGATTGTACGTCTCAATAGCTGAGTCTATAT------CCCA 63751
|| | || | || | |||| ||||| ||||| | | | || || | ||||
Sbjct 26953 AAGAACTTGTTGGAGAGGTAG-TTGTAGGTCTCCAGAACCCTCTCGATGTTGTCTCCCCA 27011
Query 63752 TTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGG 63793
|||| || || ||||||||||| | ||||||||| ||
Sbjct 27012 --GATG----CCAACGGCGACACGCATCAGCATGTGCTGTGG 27047
>seq1567
Length=91444
Score = 104 bits (114), Expect = 3e-17
Identities = 154/218 (71%), Gaps = 3/218 (1%)
Strand=Plus/Minus
Query 33573 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAA 33632
|||| || || ||||| || || ||||||||||| | | || | ||||| ||
Sbjct 45315 AACAGCAGGCAGGCGAAGTCAGTATGTAGACCCTCGTCACGAGAGATCAGCTCGTTGGAG 45256
Query 33633 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCG 33692
|| || || || ||||| ||||||||||| || ||||| || ||||| ||||| | |||
Sbjct 45255 AAGGTCAGACCAGGCATCAGGCCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCGCCG 45196
Query 33693 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGG---CG 33749
|||||||| || || || ||||| || || | ||| | || | || || |
Sbjct 45195 CTGAAGAAGATACCCTCGACGGCAGCGAATGCGACAAGGCGCTGCGCGTAGGTGGACTCC 45136
Query 33750 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTT 33787
| ||| || |||||| | ||||||| |||||||||||
Sbjct 45135 CGGTCCTGGATCCACCTCAGAGCCCAGTCGGCCTTCTT 45098
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629799351035040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |