Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryphonectria_20radicalis_20[genbank_20GCA_5F002179595.1_202017-06-
08] 2,318 sequences; 41,022,676 total letters
Query= NC_003391.1
Length=205719
Score E
Sequences producing significant alignments: (Bits) Value
seq1933 156 6e-33
seq1567 95.1 2e-14
>seq1933
Length=42650
Score = 156 bits (172), Expect = 6e-33
Identities = 453/689 (66%), Gaps = 20/689 (3%)
Strand=Plus/Plus
Query 66012 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATA 66071
|| ||||| || | || ||||| | | ||| || |||| | || ||| || |||||
Sbjct 26473 CCGGGACACTCGTTGGGGCACATAAGGGTCCAGTCGCCGTTCTTCTCCACACGCTTCATG 26532
Query 66072 AAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCT 66131
||||||||||| ||||| || || | || | || | | | || || |||||
Sbjct 26533 AAGAGATCAGGGATCCAGAGGGCCAGGAAGAGGTCACGAGCACGGACCTCTTCCTTTCCG 26592
Query 66132 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATG 66191
||||| || ||||||||| | | | |||| |||||||| |||| ||| |||
Sbjct 26593 TGGTTCTTGCGCAGGTCGAGGAACTCGAAGACATCAGCGTGCCACGGCTCCAGGTAGATG 26652
Query 66192 GCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 66251
|| | | || || || ||||| || ||||| || | ||| | ||| ||||| || |
Sbjct 26653 GCAAAGGCACCGGGGCGCTTGTTGCCACCCTGGTCGACGTAGCGAGCAGTGTTGTTGAAG 26712
Query 66252 ACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCA 66311
|| | || ||| || || || ||||| || || || ||||| |||| |||||| |||
Sbjct 26713 ACACGCAGCATGGGGATGATGCCATTAGACGTGCCGTTGGTGCCGGCAATATAGGAGCCA 26772
Query 66312 CTTGCACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATG 66369
| ||||| || | |||| ||||| || || || ||||| || ||||| | |
Sbjct 26773 GTGGCACGGATGCGGTGGACATTG--AGACCAATGCCTCCGGCCATCTTGGAGATCATGG 26830
Query 66370 CGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAA 66429
| || || | || |||||||| ||||| || ||||| ||| |||||| | ||| |
Sbjct 26831 CACAGGTCTTGAGGGTGTCATAGATACCCTCGATGCTATCCTCCTTCATGTCCACTAGGA 26890
Query 66430 AACAGCTAGACATTTGGTGAC-GACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGC 66488
| || |||| | ||| | || || || || || |||| || || ||||||||
Sbjct 26891 AGCACGATGACAGCT-GTGCCTGAGGCGTGCCGGCGTTGAATAGAGTCGGCGAAGCGTGT 26949
Query 66489 GTAAACCATTTTTCAGA-AAGTAGATTGTACGTCTCAATAGCTGAGTCTATAT------C 66541
|| || | || | || | |||| ||||| ||||| | | | || || | |
Sbjct 26950 GTGAAGAACTTGTTGGAGAGGTAG-TTGTAGGTCTCCAGAACCCTCTCGATGTTGTCTCC 27008
Query 66542 CCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTT 66601
||| |||| || || ||||||||||| | ||||||||| || | || |||| |||
Sbjct 27009 CCA--GATG----CCAACGGCGACACGCATCAGCATGTGCTGTGGCCGCTCGACGACCTT 27062
Query 66602 GTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGA 66661
| ||| | || | | || || |||| || || || || || || | ||||
Sbjct 27063 GCCGTTGAGCTTGAGGAGATACGAGCGCTCCAGGGTCTTGAAGCCGAAGTATTGGTATTG 27122
Query 66662 AAAGTCTCGTTCGTAAATAATAACCGAGT 66690
||||||| || || | || ||||||
Sbjct 27123 GTAGTCTCGGTCATAGACGATGGCCGAGT 27151
>seq1567
Length=91444
Score = 95.1 bits (104), Expect = 2e-14
Identities = 152/218 (70%), Gaps = 3/218 (1%)
Strand=Plus/Minus
Query 36149 AACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAA 36208
|||| || || ||||| || |||||||||||||| | | || | ||||||||
Sbjct 45315 AACAGCAGGCAGGCGAAGTCAGTATGTAGACCCTCGTCACGAGAGATCAGCTCGTTGGAG 45256
Query 36209 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCA 36268
|| || || || ||||| ||||||||||| || ||||| || ||||| || || | ||
Sbjct 45255 AAGGTCAGACCAGGCATCAGGCCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCGCCG 45196
Query 36269 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGG---CA 36325
||||| || || || || || || || || | ||| | || | || || |
Sbjct 45195 CTGAAGAAGATACCCTCGACGGCAGCGAATGCGACAAGGCGCTGCGCGTAGGTGGACTCC 45136
Query 36326 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTT 36363
| ||| || |||||| | ||||||| |||||||||||
Sbjct 45135 CGGTCCTGGATCCACCTCAGAGCCCAGTCGGCCTTCTT 45098
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 658153729443120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |