Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryphonectria_20radicalis_20[genbank_20GCA_5F002179595.1_202017-06- 08] 2,318 sequences; 41,022,676 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq813 140 3e-28 >seq813 Length=186750 Score = 140 bits (154), Expect = 3e-28 Identities = 310/464 (67%), Gaps = 66/464 (14%) Strand=Plus/Plus Query 21000 ACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAGG 21059 ||||| ||||||| | ||||| || ||||||||||||||||| ||||| || |||||| Sbjct 155473 ACGTGCGCGATCATGTGTGTCAGCAGCGCGTAGCTGGCGATGTTGAACGGCACGCCGAGG 155532 Query 21060 CCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAG------------------CTC- 21100 ||||||||| ||||| |||||||||||||||| ||| ||| Sbjct 155533 CCCATGTCGCAGGACCGCTGGTACAGCTGGCAGTGCAGGTGGCCCTTGGGCTTCGCCTCG 155592 Query 21101 ----CCCC-----CGAGCC--------------------ACGTAAAACTGACACAAA-AC 21130 |||| | ||| ||||| ||||| | |||| | Sbjct 155593 CCATCCCCGCTGTCCTGCCCCGCCGGCCGTGGATACGATACGTAGAACTG-CGCAAACAT 155651 Query 21131 GTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGGGGTTCCACGCGCACATAACGAT 21190 |||||| || || || ||||| | ||||| |||||||||||||| ||| | ||| Sbjct 155652 GTGACAGGGCGGCAGCGCCATGATCTTCAGGTCTTTGGGGTTCCACGCGCTCATGATGAT 155711 Query 21191 GCGCCGATCGT--GGGGCCG-CCTG---TTAATTAGATCCACCACGTAACGCAGCTGGTC 21244 |||||| |||| ||| || |||| || || || || | ||||||||| Sbjct 155712 GCGCCGGTCGTACGGGTTCGTCCTGAGCTTGTGTATGACCTCCGC------CAGCTGGTC 155765 Query 21245 CACCCCCTGACCCTCGTAGT-TGGCGTCGGCCCCCCTGTACTCCGCCCCAAAATGTCTCC 21303 || ||||| ||| ||||| | | || || || |||||| |||||||| || | || Sbjct 155766 GACGCCCTGGCCCGTGTAGTCCGTCCTC-GCGTCCACGTACTCGGCCCCAAAGTGGCGCC 155824 Query 21304 ACTGGAACCCGTACACCGGCCCCAGATCGCCCTCGCGGCGGTCCCCGAAGCCCTGCGCCG 21363 ||||||| |||||||| || || || |||||| | ||||| | || |||| ||||| Sbjct 155825 ACTGGAAGCCGTACACGGGGCCGAGGTCGCCCACCTCGCGGTGCGAGAGGCCC-ACGCCG 155883 Query 21364 -CCAAAAAGGCGCGGGACCCGTGCGCGTCCCAAATTTTTACGCC 21406 ||| || |||| ||||||| ||||||| || || ||||| Sbjct 155884 TCCAGGAACTCGCGCGACCCGTTGCCGTCCCAGATCTTGACGCC 155927 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427763915060640