Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryphonectria_20radicalis_20[genbank_20GCA_5F002179595.1_202017-06-
08] 2,318 sequences; 41,022,676 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq1933 170 3e-37
seq1567 107 3e-18
>seq1933
Length=42650
Score = 170 bits (188), Expect = 3e-37
Identities = 403/600 (67%), Gaps = 18/600 (3%)
Strand=Plus/Plus
Query 79891 CCAGGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATA 79950
|| ||||| |||| || ||||| | | ||| || || | | || || || |||||
Sbjct 26473 CCGGGACACTCGTTGGGGCACATAAGGGTCCAGTCGCCGTTCTTCTCCACACGCTTCATG 26532
Query 79951 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCT 80010
||||||||||| ||||| || || | || || || | | | ||| || |||||
Sbjct 26533 AAGAGATCAGGGATCCAGAGGGCCAGGAAGAGGTCACGAGCACGGACCTCTTCCTTTCCG 26592
Query 80011 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 80070
||||| || ||||||||| | | | ||||| |||||||| |||| ||| |||
Sbjct 26593 TGGTTCTTGCGCAGGTCGAGGAACTCGAAGACATCAGCGTGCCACGGCTCCAGGTAGATG 26652
Query 80071 GCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 80130
|| | | || || || ||||| || ||||| || | ||| | ||| ||||| || |
Sbjct 26653 GCAAAGGCACCGGGGCGCTTGTTGCCACCCTGGTCGACGTAGCGAGCAGTGTTGTTGAAG 26712
Query 80131 ACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCA 80190
|| | || ||| || || || ||||| || || || ||||| |||| |||||| |||
Sbjct 26713 ACACGCAGCATGGGGATGATGCCATTAGACGTGCCGTTGGTGCCGGCAATATAGGAGCCA 26772
Query 80191 CTGGCACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATG 80248
||||||| || | |||| ||||| || || || ||||| || ||||| | |
Sbjct 26773 GTGGCACGGATGCGGTGGACATTG--AGACCAATGCCTCCGGCCATCTTGGAGATCATGG 26830
Query 80249 CGCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAA 80308
| || || | || |||||||| ||||| |||||||| || |||||| | ||| |
Sbjct 26831 CACAGGTCTTGAGGGTGTCATAGATACCCTCGATGCTATCCTCCTTCATGTCCACTAGGA 26890
Query 80309 AACAGCTAGACATTTGGTGAC-GACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGC 80367
| || |||| | ||| | || || || || || |||| || || ||||||||
Sbjct 26891 AGCACGATGACAGCT-GTGCCTGAGGCGTGCCGGCGTTGAATAGAGTCGGCGAAGCGTGT 26949
Query 80368 GTAAACCATTTTTCAGACA-GTAGATTGTACGTCTCAATAGC-----TGATTCTATATCC 80421
|| || | || | || | |||| ||||| ||||| | | | ||| | | |||
Sbjct 26950 GTGAAGAACTTGTTGGAGAGGTAG-TTGTAGGTCTCCAGAACCCTCTCGATGTTGTCTCC 27008
Query 80422 CATTGATGAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTG 80481
| |||| || || ||||||||||| | ||||||||| || | || |||| ||||
Sbjct 27009 C-CAGATG----CCAACGGCGACACGCATCAGCATGTGCTGTGGCCGCTCGACGACCTTG 27063
>seq1567
Length=91444
Score = 107 bits (118), Expect = 3e-18
Identities = 155/218 (71%), Gaps = 3/218 (1%)
Strand=Plus/Minus
Query 49951 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAA 50010
|||| || || ||||| || || ||||||||||| | | || || ||||||||
Sbjct 45315 AACAGCAGGCAGGCGAAGTCAGTATGTAGACCCTCGTCACGAGAGATCAGCTCGTTGGAG 45256
Query 50011 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCA 50070
|| || || || ||||| ||||||||||| || ||||| || ||||| || || | ||
Sbjct 45255 AAGGTCAGACCAGGCATCAGGCCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCGCCG 45196
Query 50071 GAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGG---CG 50127
|||||||| || || || || || || || ||||| | || | || ||| |
Sbjct 45195 CTGAAGAAGATACCCTCGACGGCAGCGAATGCGACAAGGCGCTGCGCGTAGGTGGACTCC 45136
Query 50128 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTT 50165
| ||| || |||||| | ||||||| |||||||||||
Sbjct 45135 CGGTCCTGGATCCACCTCAGAGCCCAGTCGGCCTTCTT 45098
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 718247988161520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |