Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryphonectria_20radicalis_20[genbank_20GCA_5F002179595.1_202017-06-
08] 2,318 sequences; 41,022,676 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq1933 176 7e-39
seq1567 113 7e-20
>seq1933
Length=42650
Score = 176 bits (194), Expect = 7e-39
Identities = 347/508 (68%), Gaps = 4/508 (1%)
Strand=Plus/Minus
Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935
||||| ||||| || || || || || | ||| ||||| |||| || |||||||| ||
Sbjct 26684 CAGGGTGGCAACAAGCGCCCCGGTGCCTTTGCCATCTACCTGGAGCCGTGGCACGCTGAT 26625
Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995
|| || || || |||| ||||||| ||| || ||||||| || || | |||
Sbjct 26624 GTCTTCGAGTTCCTCGACCTGCGCAAGAACCACGGAAAGGAAGAGGTCCGTGCTCGTGAC 26565
Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTAC 97055
| || || |||||| | || ||| | ||||||||||| || | | ||| ||
Sbjct 26564 CTCTTCCTGGCCCTCTGGATCCCTGATCTCTTCATGAAGCGTGTGGAGAAGAACGGCGAC 26505
Query 97056 TGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTT 97115
|||| ||| ||||||||| || || ||||| ||| |||| |||| ||||| |||||
Sbjct 26504 TGGACCCTTATGTGCCCCAACGAGTGTCCCGGCCTGGCCGACTGCTACGGCGAGGAGTTC 26445
Query 97116 GAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATACGTG-AGACGAGTCGATGCACG 97174
|||||| |||| | || |||| ||||| || | | |||| | | ||||
Sbjct 26444 GAGGCCTTGTACGAGAAGTATGAGCGCGAGGGTCGCGGCCAGAAGAC-CTTGAAGGCAC- 26387
Query 97175 AGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCT 97233
|||| |||||| | |||||| | ||| ||| ||||| || | || | ||| || |
Sbjct 26386 AGAAGCTGTGGTATGCCATCCTCGAGGCGCAGACCGAGACCGGCAACCCATTCATGCTGT 26327
Query 97234 ACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCA 97293
||||||| || || ||||| |||||||| || ||||||||||| ||||||
Sbjct 26326 ACAAGGACCACGCCAACCGCAAGAGCAACCAGAAGAACCTGGGCACCATCCGCAGCTCCA 26267
Query 97294 ATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTTGCGTTCTGG 97353
| || |||||||| || | |||||| | | || |||||| || || ||| ||||
Sbjct 26266 ACCTCTGCACGGAGATCATCGAGTACTCTGCCCCTGACGAGGTTGCTGTCTGCAACCTGG 26207
Query 97354 CATCGGTCAATCTGCCCAAGTTTGTAGA 97381
| || || ||||| |||| || ||
Sbjct 26206 CGTCCATCGCCCTGCCTCAGTTCGTCGA 26179
>seq1567
Length=91444
Score = 113 bits (124), Expect = 7e-20
Identities = 193/280 (69%), Gaps = 0/280 (0%)
Strand=Plus/Plus
Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078
|| ||| | |||||||| ||| |||| ||||| ||||| | || ||| | ||||||
Sbjct 44688 ATCTGGCAGATGTACAAGAAGCACGAGGCATCCTTCTGGACTGCTGAGGAGATTGATCTG 44747
Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138
|||||||||||| |||| ||| | | || |||| | ||| | | || || ||
Sbjct 44748 TCCAAGGACCTGCACGACTGGAACAACCGCCTGACCAATGACGAGAAATACTTCATCTCC 44807
Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGA 125198
||||| | ||||||||||||| ||| || || || |||||||| || || | ||
Sbjct 44808 CACATCCTCGCCTTCTTTGCCGCCTCGGACGGCATTGTCAACGAGAACTTGATCGAGCGC 44867
Query 125199 TTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGATT 125258
||| ||| | ||||| |||| ||||| ||||| ||||| | ||||||
Sbjct 44868 TTCAGCGCTGAGGTTCAGATTCCTGAGGCCCGTTGCTTCTACGGCTTCCAGACCATGATG 44927
Query 125259 GAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACA 125298
|||||| | ||||| || | ||||| ||||| ||||
Sbjct 44928 GAGAACATCCACTCCGAGACATACTCCCTCCTGATCGACA 44967
Score = 113 bits (124), Expect = 7e-20
Identities = 329/500 (66%), Gaps = 19/500 (4%)
Strand=Plus/Plus
Query 125361 ATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCC 125420
|| || || ||||| | |||| | |||||||| | ||| |||| | |||||
Sbjct 45092 ATCCGCAAGAAGGCCGACTGGGCTCTGAGGTGGATCCAGGACCGGGAGTCCACCTACGCG 45151
Query 125421 GACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCC 125480
| | || || |||||||| ||||| ||||| |||||||| || || || ||
Sbjct 45152 CAGCGCCTTGTCGCATTCGCTGCCGTCGAGGGTATCTTCTTCAGCGGCGCCTTCGCCTCC 45211
Query 125481 ATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATA 125540
||||| |||||||||||||| || || ||||| || ||||| | |||||| | ||
Sbjct 45212 ATCTTCTGGCTCAAGAAGCGTGGCCTGATGCCTGGTCTGACCTTCTCCAACGAGCTGATC 45271
Query 125541 TCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTT-TCGCAACT-ATCTGC 125598
||||| |||||||| ||||| |||||| ||| || ||||| || || || | | |
Sbjct 45272 TCTCGTGACGAGGGTCTACATACTGACTTCGCCTGCCTGCTGTTCTCCCACCTGAACAAC 45331
Query 125599 GTCCCGAGTGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGA 125658
|| || | ||||| | | ||| |||| | || |||||||| |
Sbjct 45332 CGGCCCAG----CAAGCAGCG-CGTAGAGGCTATCA------TCACGGATGCCGTTGTCA 45380
Query 125659 TAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGC 125718
| || | ||||| || || || |||| || || || | ||||||||| || |
Sbjct 45381 TTGAGAAGGAGTTCCTGACTGAGGCCCTGCCCTGTGGCCTGCTCGGCATGAACGCCACCC 45440
Query 125719 TAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGC--CG 125776
| ||| ||||||| ||||| || || || ||||| || || | ||| ||
Sbjct 45441 TGATGAAGCAGTACATTGAGTTCGTCGCCGACCGTCTCCT---CGTCGCCCTCGGCAACG 45497
Query 125777 -CAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTA 125835
||| | ||||| | || ||||| || |||||| | ||| || || | || |
Sbjct 45498 AGAAGGTCTACAAGTCTTCCAACCCCTTCGACTTCATGGAGAACATCTCCCTTGGCGGCA 45557
Query 125836 AGACCAACTTTTTCGAGAAG 125855
|||||||||| |||||||||
Sbjct 45558 AGACCAACTTCTTCGAGAAG 45577
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 741037727809680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |