Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryphonectria_20radicalis_20[genbank_20GCA_5F002179595.1_202017-06- 08] 2,318 sequences; 41,022,676 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq1933 176 7e-39 seq1567 113 7e-20 >seq1933 Length=42650 Score = 176 bits (194), Expect = 7e-39 Identities = 347/508 (68%), Gaps = 4/508 (1%) Strand=Plus/Minus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 ||||| ||||| || || || || || | ||| ||||| |||| || |||||||| || Sbjct 26684 CAGGGTGGCAACAAGCGCCCCGGTGCCTTTGCCATCTACCTGGAGCCGTGGCACGCTGAT 26625 Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995 || || || || |||| ||||||| ||| || ||||||| || || | ||| Sbjct 26624 GTCTTCGAGTTCCTCGACCTGCGCAAGAACCACGGAAAGGAAGAGGTCCGTGCTCGTGAC 26565 Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTAC 97055 | || || |||||| | || ||| | ||||||||||| || | | ||| || Sbjct 26564 CTCTTCCTGGCCCTCTGGATCCCTGATCTCTTCATGAAGCGTGTGGAGAAGAACGGCGAC 26505 Query 97056 TGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTT 97115 |||| ||| ||||||||| || || ||||| ||| |||| |||| ||||| ||||| Sbjct 26504 TGGACCCTTATGTGCCCCAACGAGTGTCCCGGCCTGGCCGACTGCTACGGCGAGGAGTTC 26445 Query 97116 GAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATACGTG-AGACGAGTCGATGCACG 97174 |||||| |||| | || |||| ||||| || | | |||| | | |||| Sbjct 26444 GAGGCCTTGTACGAGAAGTATGAGCGCGAGGGTCGCGGCCAGAAGAC-CTTGAAGGCAC- 26387 Query 97175 AGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCT 97233 |||| |||||| | |||||| | ||| ||| ||||| || | || | ||| || | Sbjct 26386 AGAAGCTGTGGTATGCCATCCTCGAGGCGCAGACCGAGACCGGCAACCCATTCATGCTGT 26327 Query 97234 ACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCA 97293 ||||||| || || ||||| |||||||| || ||||||||||| |||||| Sbjct 26326 ACAAGGACCACGCCAACCGCAAGAGCAACCAGAAGAACCTGGGCACCATCCGCAGCTCCA 26267 Query 97294 ATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTTGCGTTCTGG 97353 | || |||||||| || | |||||| | | || |||||| || || ||| |||| Sbjct 26266 ACCTCTGCACGGAGATCATCGAGTACTCTGCCCCTGACGAGGTTGCTGTCTGCAACCTGG 26207 Query 97354 CATCGGTCAATCTGCCCAAGTTTGTAGA 97381 | || || ||||| |||| || || Sbjct 26206 CGTCCATCGCCCTGCCTCAGTTCGTCGA 26179 >seq1567 Length=91444 Score = 113 bits (124), Expect = 7e-20 Identities = 193/280 (69%), Gaps = 0/280 (0%) Strand=Plus/Plus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| | |||||||| ||| |||| ||||| ||||| | || ||| | |||||| Sbjct 44688 ATCTGGCAGATGTACAAGAAGCACGAGGCATCCTTCTGGACTGCTGAGGAGATTGATCTG 44747 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 |||||||||||| |||| ||| | | || |||| | ||| | | || || || Sbjct 44748 TCCAAGGACCTGCACGACTGGAACAACCGCCTGACCAATGACGAGAAATACTTCATCTCC 44807 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGA 125198 ||||| | ||||||||||||| ||| || || || |||||||| || || | || Sbjct 44808 CACATCCTCGCCTTCTTTGCCGCCTCGGACGGCATTGTCAACGAGAACTTGATCGAGCGC 44867 Query 125199 TTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGATT 125258 ||| ||| | ||||| |||| ||||| ||||| ||||| | |||||| Sbjct 44868 TTCAGCGCTGAGGTTCAGATTCCTGAGGCCCGTTGCTTCTACGGCTTCCAGACCATGATG 44927 Query 125259 GAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACA 125298 |||||| | ||||| || | ||||| ||||| |||| Sbjct 44928 GAGAACATCCACTCCGAGACATACTCCCTCCTGATCGACA 44967 Score = 113 bits (124), Expect = 7e-20 Identities = 329/500 (66%), Gaps = 19/500 (4%) Strand=Plus/Plus Query 125361 ATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCC 125420 || || || ||||| | |||| | |||||||| | ||| |||| | ||||| Sbjct 45092 ATCCGCAAGAAGGCCGACTGGGCTCTGAGGTGGATCCAGGACCGGGAGTCCACCTACGCG 45151 Query 125421 GACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCC 125480 | | || || |||||||| ||||| ||||| |||||||| || || || || Sbjct 45152 CAGCGCCTTGTCGCATTCGCTGCCGTCGAGGGTATCTTCTTCAGCGGCGCCTTCGCCTCC 45211 Query 125481 ATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATA 125540 ||||| |||||||||||||| || || ||||| || ||||| | |||||| | || Sbjct 45212 ATCTTCTGGCTCAAGAAGCGTGGCCTGATGCCTGGTCTGACCTTCTCCAACGAGCTGATC 45271 Query 125541 TCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTT-TCGCAACT-ATCTGC 125598 ||||| |||||||| ||||| |||||| ||| || ||||| || || || | | | Sbjct 45272 TCTCGTGACGAGGGTCTACATACTGACTTCGCCTGCCTGCTGTTCTCCCACCTGAACAAC 45331 Query 125599 GTCCCGAGTGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGA 125658 || || | ||||| | | ||| |||| | || |||||||| | Sbjct 45332 CGGCCCAG----CAAGCAGCG-CGTAGAGGCTATCA------TCACGGATGCCGTTGTCA 45380 Query 125659 TAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGC 125718 | || | ||||| || || || |||| || || || | ||||||||| || | Sbjct 45381 TTGAGAAGGAGTTCCTGACTGAGGCCCTGCCCTGTGGCCTGCTCGGCATGAACGCCACCC 45440 Query 125719 TAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGC--CG 125776 | ||| ||||||| ||||| || || || ||||| || || | ||| || Sbjct 45441 TGATGAAGCAGTACATTGAGTTCGTCGCCGACCGTCTCCT---CGTCGCCCTCGGCAACG 45497 Query 125777 -CAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTA 125835 ||| | ||||| | || ||||| || |||||| | ||| || || | || | Sbjct 45498 AGAAGGTCTACAAGTCTTCCAACCCCTTCGACTTCATGGAGAACATCTCCCTTGGCGGCA 45557 Query 125836 AGACCAACTTTTTCGAGAAG 125855 |||||||||| ||||||||| Sbjct 45558 AGACCAACTTCTTCGAGAAG 45577 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741037727809680