Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryphonectria_20radicalis_20[genbank_20GCA_5F002179595.1_202017-06- 08] 2,318 sequences; 41,022,676 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq813 100 2e-16 >seq813 Length=186750 Score = 100 bits (110), Expect = 2e-16 Identities = 372/588 (63%), Gaps = 75/588 (13%) Strand=Plus/Plus Query 25388 GGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCTACGTGATCCAGGTA 25447 ||||||| | ||||||||||| ||||| ||| | |||| || ||||| |||| ||| Sbjct 155361 GGGAAAGTCGCGCGGCTCCCTCTCCAGCTGTGTCCTGAGCGCGTCGACGTGGTCCACGTA 155420 Query 25448 GACGTGAGCGTCTCCCAGAGTGTG-GACAAACTCTCCCGGTTCTAGCCCGGTAACGTAAG 25506 ||| || ||||| |||| ||| | || || ||||| | || | |||| | Sbjct 155421 GACATGCGCGTCGCCCATGACGTGCGTCAGGCT-GCCCGGCACGAGATCACACACGTGCG 155479 Query 25507 CCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGTACCCCGAACCCCATGT 25566 | ||||||| || || || ||||||||||||||| || || || |||| ||||||| Sbjct 155480 CGATCATGTGTGTCAGCAGCGCGTAGCTGGCGATGTTGAACGGCACGCCGAGGCCCATGT 155539 Query 25567 CCCCCCGACCTCTGGTAGAGCTGACACGAGAGCT----------CTTCG--TCGC--TC- 25611 | | |||| |||||| ||||| || || | ||||| |||| || Sbjct 155540 -CGCAGGACCGCTGGTACAGCTGGCAGTGCAGGTGGCCCTTGGGCTTCGCCTCGCCATCC 155598 Query 25612 ---------------------------------ACGTAAAACTG---ACACATGGTGTAG 25635 ||||| ||||| | ||| ||| Sbjct 155599 CCGCTGTCCTGCCCCGCCGGCCGTGGATACGATACGTAGAACTGCGCAAACA---TGTGA 155655 Query 25636 CACGGAGGAAGAGCTATAAGGCCCAAGTCTTTAGGGTTCCAGGCGCACACGATGATGCAC 25695 || || || || || || | || |||||| |||||||| |||| || |||||||| | Sbjct 155656 CAGGGCGGCAGCGCCATGATCTTCAGGTCTTTGGGGTTCCACGCGCTCATGATGATGCGC 155715 Query 25696 CTGTCTTCTGGGTTGTCCCTGA-------TAAGA--TCCGCGGTGTTTTGCAGCTGATCC 25746 | ||| | ||||| ||||| || || ||||| |||||| || Sbjct 155716 CGGTCGTACGGGTTCGTCCTGAGCTTGTGTATGACCTCCGC---------CAGCTGGTCG 155766 Query 25747 ACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATACCTCCAC 25806 || ||| |||| |||||| | |||| |||| |||||| || || || | | |||| Sbjct 155767 ACGCCCTGGCCCGTGTAGTCCGTCCTCGCGTCCACGTACTCGGCCCCAAAGTGGCGCCAC 155826 Query 25807 TGGAACCCGTACACCGGTCCTAGGTCTCCATCTTCCCTGTGCTCAAAGCCCCTCTTATCC 25866 ||||| |||||||| || || ||||| || | || | |||| | |||| ||| Sbjct 155827 TGGAAGCCGTACACGGGGCCGAGGTCGCCCACCTCGCGGTGCGAGAGGCCCACGCCGTCC 155886 Query 25867 AAAAAGTCTCTGGAACCATTGGCGTCCCAGATCTTTACCCCCTTCTCG 25914 | || || | || || ||| ||||||||||||| || |||| |||| Sbjct 155887 AGGAACTCGCGCGACCCGTTGCCGTCCCAGATCTTGACGCCCTGCTCG 155934 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340127990900214