Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryphonectria_20radicalis_20[genbank_20GCA_5F002179595.1_202017-06- 08] 2,318 sequences; 41,022,676 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq1543 86.0 5e-12 >seq1543 Length=161075 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576 ||| || || || || |||||| ||||||||||| || | | | || | ||||| Sbjct 71503 CACCAAGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCTGAGAGTGTCCGGCCATCCTC 71562 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 ||||||||| || || | || | ||||||||| || || | || ||||||||| Sbjct 71563 CAGCTGCTTGCCCGCGAAGATGAGACGCTGCTGGTCTGGTGGGATACCCTCCTTGTCCTG 71622 Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696 ||| || ||| | | || ||||| | |||||| ||||| || ||||| || Sbjct 71623 AATCTTGGCCTTCACGTTGTCAATTGTATCCGAAGACTCGACCTCGAGAGTGATGGTCTT 71682 Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 |||||||| || || || || |||||||| Sbjct 71683 GCCGGTGAGGGTCTTGACGAAGATCTGCAT 71712 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421239299390318