Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryphonectria_20radicalis_20[genbank_20GCA_5F002179595.1_202017-06-
08] 2,318 sequences; 41,022,676 total letters
Query= NC_006549.1
Length=140131
Score E
Sequences producing significant alignments: (Bits) Value
seq1543 104 2e-17
seq757 93.3 4e-14
>seq1543
Length=161075
Score = 104 bits (114), Expect = 2e-17
Identities = 167/238 (70%), Gaps = 4/238 (2%)
Strand=Plus/Plus
Query 94774 TTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATA 94833
|||| ||| || | || |||| ||||||||||| || || ||||| || | ||| ||
Sbjct 71479 TTACTGTCCACCACGCAGACGCAGCACCAAGTGCAGCGTCGACTCCTTCTGAATGTTGTA 71538
Query 94834 ATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGA 94891
|| | | ||||| | |||||||||||| || || | ||||| | | |||||
Sbjct 71539 GTC--TGAGAGTGTCCGGCCATCCTCCAGCTGCTTGCCCGCGAAGATGAGACGCTGCTGG 71596
Query 94892 TCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCG 94951
||||| || ||||| || ||||| | ||| || ||||| ||| | | | || || |
Sbjct 71597 TCTGGTGGGATACCCTCCTTGTCCTGAATCTTGGCCTTCACGTTGTCAATTGTATCCGAA 71656
Query 94952 TGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009
||||| || | |||||||| || || || || || || || |||||||||||||
Sbjct 71657 GACTCGACCTCGAGAGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATGC 71714
Score = 98.7 bits (108), Expect = 9e-16
Identities = 144/204 (71%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 94804 GTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTG 94863
||| | |||||| ||||| || | ||| || ||| | || | ||||| |||||
Sbjct 71737 GTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTACGGCCGTCCTCGAGCTG 71796
Query 94864 TTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTT 94923
||||| ||||||| | | ||||| ||||| || ||||| || ||||| | ||| ||
Sbjct 71797 CTTTCCAGCAAAGATGAGGCGCTGCTGGTCTGGGGGGATACCCTCCTTGTCCTGAATCTT 71856
Query 94924 TGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGT 94983
||||| ||| | ||| ||||| | | ||||| || | |||||||| || || ||
Sbjct 71857 GGCCTTCACGTTGTCGATGGTGTCGGAGGACTCGACCTCGAGGGTGATGGTCTTGCCGGT 71916
Query 94984 AAGAGTTTTCACAAAGATCTGCAT 95007
|| || || || |||||||||||
Sbjct 71917 GAGCGTCTTGACGAAGATCTGCAT 71940
Score = 89.7 bits (98), Expect = 5e-13
Identities = 145/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858
|||| ||| | || || ||||| || | ||| || ||| | ||| | |||||
Sbjct 71960 ACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCG 72019
Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918
||||| || ||| | || || | | ||||| || ||||| || || || ||||| | |
Sbjct 72020 AGCTGCTTGCCGGCGAAAATCAGGCGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTGA 72079
Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978
|| || ||||| ||| | ||| ||||| | | ||||| |||| |||||||| ||
Sbjct 72080 ATCTTGGCCTTCACGTTGTCGATGGTGTCGGAGGACTCGACCTCAAGAGTGATGGTCTTG 72139
Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|| || || || || || |||||||||||
Sbjct 72140 CCGGTGAGGGTCTTGACGAAGATCTGCAT 72168
>seq757
Length=325751
Score = 93.3 bits (102), Expect = 4e-14
Identities = 150/216 (69%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852
|||| |||| ||||| || || ||||| || | ||| || ||| || ||| |
Sbjct 30048 CGCAGGACCAGGTGCAGGGTGGACTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCG 29989
Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912
||||| ||||| || || ||||||| | | ||||| ||||| || || || || |||
Sbjct 29988 TCCTCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCTGGGGGGATGCCCTCCTTG 29929
Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972
|| | ||||| |||||||| | ||| ||||| | || || |||| |||||
Sbjct 29928 TCCTGGATTTTGGCCTTGACATTGTCGATGGTGTCGGATGACTCCACCTCAAGGGTGATA 29869
Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008
|| || || || || || || || ||||||||||||
Sbjct 29868 GTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCATG 29833
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448278210762480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |