Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryphonectria_20radicalis_20[genbank_20GCA_5F002179595.1_202017-06-
08] 2,318 sequences; 41,022,676 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq1933 170 2e-37
seq1567 107 2e-18
>seq1933
Length=42650
Score = 170 bits (188), Expect = 2e-37
Identities = 456/689 (66%), Gaps = 20/689 (3%)
Strand=Plus/Plus
Query 63168 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATA 63227
|| ||||| || | || ||||| | | ||| || |||| | || ||| || |||||
Sbjct 26473 CCGGGACACTCGTTGGGGCACATAAGGGTCCAGTCGCCGTTCTTCTCCACACGCTTCATG 26532
Query 63228 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCT 63287
||||||||||| ||||| || || | || || || | | | || || |||||
Sbjct 26533 AAGAGATCAGGGATCCAGAGGGCCAGGAAGAGGTCACGAGCACGGACCTCTTCCTTTCCG 26592
Query 63288 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 63347
||||| || ||||||||| | | | ||||| |||||||| |||| ||| |||
Sbjct 26593 TGGTTCTTGCGCAGGTCGAGGAACTCGAAGACATCAGCGTGCCACGGCTCCAGGTAGATG 26652
Query 63348 GCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 63407
|| | | || || || ||||| || ||||| || | ||| | ||| ||||| || |
Sbjct 26653 GCAAAGGCACCGGGGCGCTTGTTGCCACCCTGGTCGACGTAGCGAGCAGTGTTGTTGAAG 26712
Query 63408 ACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCA 63467
|| | || ||| || || || || || || | || ||||| |||| |||||| |||
Sbjct 26713 ACACGCAGCATGGGGATGATGCCATTAGACGTGCCGTTGGTGCCGGCAATATAGGAGCCA 26772
Query 63468 CTGGCACGAATAT--TACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATG 63525
||||||| || | ||||| |||| || || || ||||| || ||||| | |
Sbjct 26773 GTGGCACGGATGCGGTGGACATTGA--GACCAATGCCTCCGGCCATCTTGGAGATCATGG 26830
Query 63526 CGCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAA 63585
| || || | ||||||||||||||||| |||||||| || |||||| | ||| |
Sbjct 26831 CACAGGTCTTGAGGGTGTCATAGATACCCTCGATGCTATCCTCCTTCATGTCCACTAGGA 26890
Query 63586 AACAGCTAGACATTTGGTGAC-GACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGC 63644
| || |||| | ||| | || || || || || |||| || || ||||||||
Sbjct 26891 AGCACGATGACAGCT-GTGCCTGAGGCGTGCCGGCGTTGAATAGAGTCGGCGAAGCGTGT 26949
Query 63645 GTAAACCATTTTTCAGA-AAGTAGATTGTACGTCTCAATAGCTGAGTCTATAT------C 63697
|| || | || | || | |||| ||||| ||||| | | | || || | |
Sbjct 26950 GTGAAGAACTTGTTGGAGAGGTAG-TTGTAGGTCTCCAGAACCCTCTCGATGTTGTCTCC 27008
Query 63698 CCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTT 63757
||| |||| || || ||||||||||| | ||||||||| || | || |||| |||
Sbjct 27009 CCA--GATG----CCAACGGCGACACGCATCAGCATGTGCTGTGGCCGCTCGACGACCTT 27062
Query 63758 GTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGA 63817
| ||| | || | | || || |||| || || || || || || | ||||
Sbjct 27063 GCCGTTGAGCTTGAGGAGATACGAGCGCTCCAGGGTCTTGAAGCCGAAGTATTGGTATTG 27122
Query 63818 AAAGTCTCGTTCGTAAATAATAACCGAGT 63846
||||||| || || | || ||||||
Sbjct 27123 GTAGTCTCGGTCATAGACGATGGCCGAGT 27151
>seq1567
Length=91444
Score = 107 bits (118), Expect = 2e-18
Identities = 155/218 (71%), Gaps = 3/218 (1%)
Strand=Plus/Minus
Query 33295 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAA 33354
|||| || || ||||| || || ||||||||||| | | || || ||||||||
Sbjct 45315 AACAGCAGGCAGGCGAAGTCAGTATGTAGACCCTCGTCACGAGAGATCAGCTCGTTGGAG 45256
Query 33355 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCA 33414
|| || || || ||||| ||||||||||| || ||||| || ||||| ||||| | ||
Sbjct 45255 AAGGTCAGACCAGGCATCAGGCCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCGCCG 45196
Query 33415 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGG---CG 33471
|||||||| || || || ||||| || || | ||| | || | || || |
Sbjct 45195 CTGAAGAAGATACCCTCGACGGCAGCGAATGCGACAAGGCGCTGCGCGTAGGTGGACTCC 45136
Query 33472 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTT 33509
| ||| || |||||| | ||||||| |||||||||||
Sbjct 45135 CGGTCCTGGATCCACCTCAGAGCCCAGTCGGCCTTCTT 45098
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 622929150104880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |