Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryphonectria_20radicalis_20[genbank_20GCA_5F002179595.1_202017-06-
08] 2,318 sequences; 41,022,676 total letters
Query= NC_007346.1
Length=407339
Score E
Sequences producing significant alignments: (Bits) Value
seq1933 340 5e-88
>seq1933
Length=42650
Score = 340 bits (376), Expect = 5e-88
Identities = 1061/1629 (65%), Gaps = 29/1629 (2%)
Strand=Plus/Minus
Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606
||||| ||||| |||| || | | ||| || || || | | | ||||| |||| ||
Sbjct 26954 TTCACACACGCTTCGCCGACTCTATTCAACGCCGGCACGCCTCAGGCACAGCTGTCATCG 26895
Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666
||||| || | | |||||||| ||| |||||||||||||| |||||| || ||||
Sbjct 26894 TGCTTCCTAGTGGACATGAAGGAGGATAGCATCGAGGGTATCTATGACACCCTCAAGACC 26835
Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC- 363725
||||| | || ||||||| || || || |||||| | ||||| | |||||
Sbjct 26834 TGTGCCATGATCTCCAAGATGGCCGGAGGCATTGGTCTCAATGTCCACCGCATCCGTGCC 26775
Query 363726 ACAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCG 363785
|| | | || ||| |||||| || || ||||| | | |||||||| ||
Sbjct 26774 ACTGG-CTCCTATATTGCCGGCACCAACGGCACGTCTAATGGCATCATCCCCATGCTGCG 26716
Query 363786 TGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTT 363845
||| || |||| ||||| | ||||||||||||||||| |||||| || || ||
Sbjct 26715 TGTCTTCAACAACACTGCTCGCTACGTCGACCAGGGTGGCAACAAGCGCCCCGGTGCCTT 26656
Query 363846 TGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAA 363905
||| || || || ||||| || || ||| | || ||||| || || || || || ||
Sbjct 26655 TGCCATCTACCTGGAGCCGTGGCACGCTGATGTCTTCGAGTTCCTCGACCTGCGCAAGAA 26596
Query 363906 CACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCA 363965
| ||||| || || | ||||| ||||| || ||| || || ||| | |||| |
Sbjct 26595 CCACGGAAAGGAAGAGGTCCGTGCTCGTGACCTCTTCCTGGCCCTCTGGATCCCTGATCT 26536
Query 363966 TTTTATGAAGCGCGTGGAGGCAGGTAAG--AATTGGTCACTCTTTTGCCCACACGAATGT 364023
|| |||||||| |||||| | | | | | ||| | || | ||||| |||| |||
Sbjct 26535 CTTCATGAAGCGTGTGGAG--AAGAACGGCGACTGGACCCTTATGTGCCCCAACGAGTGT 26478
Query 364024 CCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCG 364083
|| || || |||| | || || || | | || | ||||| ||||||||
Sbjct 26477 CCCGGCCTGGCCGACTGCTACGGCGAGGAGTTCGAGGCCTTGTACGAGAAGTATGAGCGC 26418
Query 364084 GAGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCG 364143
||||| | | ||||| | ||||||||||| |||| ||||||| | || ||
Sbjct 26417 GAGGGTCGCGGCCAGAAGACCTTGAAGGCACAGAAGCTGTGGTATGCCATCCTCGAGGCG 26358
Query 364144 CAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAAC 364203
|||| ||||| || | || | ||| ||||||| || |||||||||| ||||
Sbjct 26357 CAGACCGAGACCGGCAACCCATTCATGCTGTACAAGGACCACGCCAACCGCAAGAGCAAC 26298
Query 364204 CAGCAGCACCTTGGTACAATTCAGCAG-AGCAACCTATGTACCGAGATTATTGAATACAC 364262
||| || |||| || || | || |||| |||||| || || ||||| || || ||| |
Sbjct 26297 CAGAAGAACCTGGGCACCA-TCCGCAGCTCCAACCTCTGCACGGAGATCATCGAGTACTC 26239
Query 364263 CGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGTAAA 364322
|| || |||||| ||| || || ||||| ||||| ||||| || || ||| || |
Sbjct 26238 TGCCCCTGACGAGGTTGCTGTCTGCAACCTGGCGTCCATCGCCCTGCCTCAGTTCGTCGA 26179
Query 364323 AGATG-GTACTTTTG-----ACCACCAGCATCTTTATGACGTAACCTATCATGCTACTTG 364376
||| | || || || ||||| || | || || ||| | || |
Sbjct 26178 CTATGAGAACGACTGCTACAACTTCCAGCTGCTGCACGAAGTCACCCAAGTTGTCGTCCG 26119
Query 364377 CAATCTCGACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGC-CG----AGCGT 364431
||| || ||||| | |||| | || || ||||| | | || || || |||
Sbjct 26118 CAACCTGAACAAGATCGTCGATATCAACTACTATCCTGTCCAGGAGGCTCGCAACAGC-- 26061
Query 364432 TCTAATATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATG 364491
|| ||||| || ||||| || || | || || ||||| || ||||| | || ||
Sbjct 26060 ---AACATGCGCCACCGCCCTATCGGCGTGGGCGTTCAGGGTCTGGCTGATGCCTTCTTG 26004
Query 364492 ATGCTCAAGATGGCATTTGATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAA 364551
||| || | || || |||||||| || ||| || || ||| ||||||||||
Sbjct 26003 GCTCTCCGCCTGCCCTTCGAGTCGCCTGAGGCCCGTCAGCTGAACAAGCAGATCTTTGAG 25944
Query 364552 ACAATGTATTTTGCCGCAATGACTGCTTCGTGTGATTTGGCAAAAACCAAGGGAAAGTAC 364611
|| || || ||||| | || || ||||| || | || || | || |||
Sbjct 25943 ACCATCTACCACGCCGCCCTCACCGCATCGTGCGACATTGCCAAGGTGGACGGTCCCTAC 25884
Query 364612 TCTACTTATGAGGGGTCCCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGG---AAT 364668
| | || ||||| || || |||| ||||| | | |||| || | ||| ||
Sbjct 25883 TTGTCGTACGAGGGATCTCCCGTTTCTCAGGGTATCCTTCAGTACGACATGTGGGACAAC 25824
Query 364669 GTCACGCCATCTGTCCGATGGAACTGGGATACGCTACGTTCCAACGTTAAGAAGCATGGT 364728
|||| ||| || | || ||| ||||||| | || |||| | ||| |||||||
Sbjct 25823 GTCAAGCCCTCGGACCTCTGGGACTGGGACGCCCTGAAGGCCAAGATCAAGCAGCATGGC 25764
Query 364729 ACTCGCAACTCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGA 364788
|||||| | | | | ||||| |||||||| || || || | |||||||| ||
Sbjct 25763 GTCCGCAACAGCTTGTTGATGGCGCCTATGCCCACTGCCTCGACCTCGCAGATCCTGGGC 25704
Query 364789 AACAACGAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGA 364848
|||||||||||||| || || | || ||| | || || || || || | ||
Sbjct 25703 AACAACGAGTGCTTTGAGCCCTACACGTCCAACATCTACCAGCGGCGTGTGCTCGCTGGT 25644
Query 364849 GAATTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGT 364908
|| || | ||| || || | || ||||||| ||| | | || ||||||
Sbjct 25643 GAGTTCCAGGTGGTCAACCCATGGCTGCTCAAGGACCTTGTGCAGTGTGGTCTGTGGTCC 25584
Query 364909 GACAGCATGAAGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATTC-CAGGATT 364967
|| | |||||||| |||||||||| |||||||| | |||||||||| ||| | |
Sbjct 25583 GAGGACCTGAAGAACCGCATCATCGCCGAGGATGGTTCTATCCAGAACATTCGCAGCA-T 25525
Query 364968 TCCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGCGAACTCTCAT 365027
|| || ||| | ||| | | ||||| ||||| ||||| || || | | || || |
Sbjct 25524 CCCGGATGATATCAAGGCCCTCTACAAGACCGTCTGGGAGATCTCGCAGAGGACCATCGT 25465
Query 365028 TGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCAT 365087
| ||||| ||||| || || ||||| ||| ||| ||||| | ||| | |||
Sbjct 25464 CCAGATGGCCGCCGACCGTGGCGCTTTCATCGACCAGTCTCAGTCCCTGAACATCCACAT 25405
Query 365088 GACTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAAATCCGGTCT 365147
| | | || | | |||| | || |||||| ||| ||| ||||| |||||
Sbjct 25404 GCGTGAACCTTCTATGGGCAAGATCACGAGCATGCACTTCACCGGATGGAAGCTGGGTCT 25345
Query 365148 TAAGACAGG 365156
||||| ||
Sbjct 25344 CAAGACTGG 25336
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1303314891212676
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |