Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryphonectria_20radicalis_20[genbank_20GCA_5F002179595.1_202017-06- 08] 2,318 sequences; 41,022,676 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq1933 340 5e-88 >seq1933 Length=42650 Score = 340 bits (376), Expect = 5e-88 Identities = 1061/1629 (65%), Gaps = 29/1629 (2%) Strand=Plus/Minus Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 ||||| ||||| |||| || | | ||| || || || | | | ||||| |||| || Sbjct 26954 TTCACACACGCTTCGCCGACTCTATTCAACGCCGGCACGCCTCAGGCACAGCTGTCATCG 26895 Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 ||||| || | | |||||||| ||| |||||||||||||| |||||| || |||| Sbjct 26894 TGCTTCCTAGTGGACATGAAGGAGGATAGCATCGAGGGTATCTATGACACCCTCAAGACC 26835 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC- 363725 ||||| | || ||||||| || || || |||||| | ||||| | ||||| Sbjct 26834 TGTGCCATGATCTCCAAGATGGCCGGAGGCATTGGTCTCAATGTCCACCGCATCCGTGCC 26775 Query 363726 ACAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCG 363785 || | | || ||| |||||| || || ||||| | | |||||||| || Sbjct 26774 ACTGG-CTCCTATATTGCCGGCACCAACGGCACGTCTAATGGCATCATCCCCATGCTGCG 26716 Query 363786 TGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTT 363845 ||| || |||| ||||| | ||||||||||||||||| |||||| || || || Sbjct 26715 TGTCTTCAACAACACTGCTCGCTACGTCGACCAGGGTGGCAACAAGCGCCCCGGTGCCTT 26656 Query 363846 TGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAA 363905 ||| || || || ||||| || || ||| | || ||||| || || || || || || Sbjct 26655 TGCCATCTACCTGGAGCCGTGGCACGCTGATGTCTTCGAGTTCCTCGACCTGCGCAAGAA 26596 Query 363906 CACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCA 363965 | ||||| || || | ||||| ||||| || ||| || || ||| | |||| | Sbjct 26595 CCACGGAAAGGAAGAGGTCCGTGCTCGTGACCTCTTCCTGGCCCTCTGGATCCCTGATCT 26536 Query 363966 TTTTATGAAGCGCGTGGAGGCAGGTAAG--AATTGGTCACTCTTTTGCCCACACGAATGT 364023 || |||||||| |||||| | | | | | ||| | || | ||||| |||| ||| Sbjct 26535 CTTCATGAAGCGTGTGGAG--AAGAACGGCGACTGGACCCTTATGTGCCCCAACGAGTGT 26478 Query 364024 CCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCG 364083 || || || |||| | || || || | | || | ||||| |||||||| Sbjct 26477 CCCGGCCTGGCCGACTGCTACGGCGAGGAGTTCGAGGCCTTGTACGAGAAGTATGAGCGC 26418 Query 364084 GAGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCG 364143 ||||| | | ||||| | ||||||||||| |||| ||||||| | || || Sbjct 26417 GAGGGTCGCGGCCAGAAGACCTTGAAGGCACAGAAGCTGTGGTATGCCATCCTCGAGGCG 26358 Query 364144 CAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAAC 364203 |||| ||||| || | || | ||| ||||||| || |||||||||| |||| Sbjct 26357 CAGACCGAGACCGGCAACCCATTCATGCTGTACAAGGACCACGCCAACCGCAAGAGCAAC 26298 Query 364204 CAGCAGCACCTTGGTACAATTCAGCAG-AGCAACCTATGTACCGAGATTATTGAATACAC 364262 ||| || |||| || || | || |||| |||||| || || ||||| || || ||| | Sbjct 26297 CAGAAGAACCTGGGCACCA-TCCGCAGCTCCAACCTCTGCACGGAGATCATCGAGTACTC 26239 Query 364263 CGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGTAAA 364322 || || |||||| ||| || || ||||| ||||| ||||| || || ||| || | Sbjct 26238 TGCCCCTGACGAGGTTGCTGTCTGCAACCTGGCGTCCATCGCCCTGCCTCAGTTCGTCGA 26179 Query 364323 AGATG-GTACTTTTG-----ACCACCAGCATCTTTATGACGTAACCTATCATGCTACTTG 364376 ||| | || || || ||||| || | || || ||| | || | Sbjct 26178 CTATGAGAACGACTGCTACAACTTCCAGCTGCTGCACGAAGTCACCCAAGTTGTCGTCCG 26119 Query 364377 CAATCTCGACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGC-CG----AGCGT 364431 ||| || ||||| | |||| | || || ||||| | | || || || ||| Sbjct 26118 CAACCTGAACAAGATCGTCGATATCAACTACTATCCTGTCCAGGAGGCTCGCAACAGC-- 26061 Query 364432 TCTAATATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATG 364491 || ||||| || ||||| || || | || || ||||| || ||||| | || || Sbjct 26060 ---AACATGCGCCACCGCCCTATCGGCGTGGGCGTTCAGGGTCTGGCTGATGCCTTCTTG 26004 Query 364492 ATGCTCAAGATGGCATTTGATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAA 364551 ||| || | || || |||||||| || ||| || || ||| |||||||||| Sbjct 26003 GCTCTCCGCCTGCCCTTCGAGTCGCCTGAGGCCCGTCAGCTGAACAAGCAGATCTTTGAG 25944 Query 364552 ACAATGTATTTTGCCGCAATGACTGCTTCGTGTGATTTGGCAAAAACCAAGGGAAAGTAC 364611 || || || ||||| | || || ||||| || | || || | || ||| Sbjct 25943 ACCATCTACCACGCCGCCCTCACCGCATCGTGCGACATTGCCAAGGTGGACGGTCCCTAC 25884 Query 364612 TCTACTTATGAGGGGTCCCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGG---AAT 364668 | | || ||||| || || |||| ||||| | | |||| || | ||| || Sbjct 25883 TTGTCGTACGAGGGATCTCCCGTTTCTCAGGGTATCCTTCAGTACGACATGTGGGACAAC 25824 Query 364669 GTCACGCCATCTGTCCGATGGAACTGGGATACGCTACGTTCCAACGTTAAGAAGCATGGT 364728 |||| ||| || | || ||| ||||||| | || |||| | ||| ||||||| Sbjct 25823 GTCAAGCCCTCGGACCTCTGGGACTGGGACGCCCTGAAGGCCAAGATCAAGCAGCATGGC 25764 Query 364729 ACTCGCAACTCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGA 364788 |||||| | | | | ||||| |||||||| || || || | |||||||| || Sbjct 25763 GTCCGCAACAGCTTGTTGATGGCGCCTATGCCCACTGCCTCGACCTCGCAGATCCTGGGC 25704 Query 364789 AACAACGAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGA 364848 |||||||||||||| || || | || ||| | || || || || || | || Sbjct 25703 AACAACGAGTGCTTTGAGCCCTACACGTCCAACATCTACCAGCGGCGTGTGCTCGCTGGT 25644 Query 364849 GAATTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGT 364908 || || | ||| || || | || ||||||| ||| | | || |||||| Sbjct 25643 GAGTTCCAGGTGGTCAACCCATGGCTGCTCAAGGACCTTGTGCAGTGTGGTCTGTGGTCC 25584 Query 364909 GACAGCATGAAGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATTC-CAGGATT 364967 || | |||||||| |||||||||| |||||||| | |||||||||| ||| | | Sbjct 25583 GAGGACCTGAAGAACCGCATCATCGCCGAGGATGGTTCTATCCAGAACATTCGCAGCA-T 25525 Query 364968 TCCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGCGAACTCTCAT 365027 || || ||| | ||| | | ||||| ||||| ||||| || || | | || || | Sbjct 25524 CCCGGATGATATCAAGGCCCTCTACAAGACCGTCTGGGAGATCTCGCAGAGGACCATCGT 25465 Query 365028 TGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCAT 365087 | ||||| ||||| || || ||||| ||| ||| ||||| | ||| | ||| Sbjct 25464 CCAGATGGCCGCCGACCGTGGCGCTTTCATCGACCAGTCTCAGTCCCTGAACATCCACAT 25405 Query 365088 GACTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAAATCCGGTCT 365147 | | | || | | |||| | || |||||| ||| ||| ||||| ||||| Sbjct 25404 GCGTGAACCTTCTATGGGCAAGATCACGAGCATGCACTTCACCGGATGGAAGCTGGGTCT 25345 Query 365148 TAAGACAGG 365156 ||||| || Sbjct 25344 CAAGACTGG 25336 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303314891212676