Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryphonectria_20radicalis_20[genbank_20GCA_5F002179595.1_202017-06- 08] 2,318 sequences; 41,022,676 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq1933 161 9e-35 seq757 134 1e-26 seq1543 132 5e-26 >seq1933 Length=42650 Score = 161 bits (178), Expect = 9e-35 Identities = 967/1532 (63%), Gaps = 30/1532 (2%) Strand=Plus/Plus Query 145058 TTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAGGGT 145117 ||||| ||||| ||||| || || | |||||| ||| || | ||| |||||| |||| Sbjct 25627 TTGACCACCTGGAACTCACCAGCGAGCACACGCCGCTGGTAGATGTTGGACGTGTAGGGC 25686 Query 145118 TCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCCACC 145177 ||||| ||||||| ||||||||||| || | ||||| || |||||||| ||||| | Sbjct 25687 TCAAAGCACTCGTTGTTGCCCAGGATCTGCGAGGTCGAGGCAGTGGGCATAGGCGCCATC 25746 Query 145178 AATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCCCAT 145237 || || ||||| | ||| |||| |||||| | |||| || | |||| ||||| Sbjct 25747 AACAAGCTGTTGCGGACGCCATGCTGCTTGATCTTGGCCTTCAGGGCGTCCCAGTCCCAG 25806 Query 145238 AGCGAAGTCGGCCTCAC---GTCCCACATGTCGTACTGCAAAATGCCCTCGCTGGCGGG- 145293 || | ||| | || |||||||||||||||||| | || |||| |||| Sbjct 25807 AGGTCCGAGGGCTTGACGTTGTCCCACATGTCGTACTGAAGGATACCCTGAGAAACGGGA 25866 Query 145294 GCTGCCTTGAAAG-GAACT-GTAACTGCCCCAAGTTTTGGCGAGCTCGCAACTCGCCTCC 145351 | | ||| | | | || | | || | || ||||| | ||||| || Sbjct 25867 GATCCCTCGTACGACAAGTAGGGACCGTCC---ACCTTGGCAATGTCGCACGATGCGGTG 25923 Query 145352 AGAGCGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTTCATCGCTC 145411 || ||| || || || ||||| || ||| |||| ||| | || ||| | Sbjct 25924 AGGGCGGCGTGGTAGATGGTCTCAAAGATCTGCTTGTTCAGCTGACGGGCCTCAGGCGAC 25983 Query 145412 TCGTACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGCCGATG 145471 ||| | |||| ||| || | || ||||| || || ||||| | ||||||||||| Sbjct 25984 TCGAAGGGCAGGCGGAGAGCCAAGAAGGCATCAGCCAGACCCTGAACGCCCACGCCGATA 26043 Query 145472 GGCCGATGTTTCATGTTGCTCATCCTCGCCGACTCGATAGGATATCGATTACGGTCGATA 145531 || || || ||||||||| | | ||| || || |||||| || |||| Sbjct 26044 GGGCGGTGGCGCATGTTGCTGTTGCGAGCCTCCTGGACAGGATAGTAGTTGATATCGACG 26103 Query 145532 ATTTTATTCAAGTTTCGCACTACTACCTTTGTAA---TGTGCCGCAACTTTTCAAAGTCA 145588 || || |||| ||| || || || || | || | |||| ||| | | |||| Sbjct 26104 ATCTTGTTCAGGTTGCGGACGACAACTTGGGTGACTTCGTGCAGCAGC---TGGAAGTTG 26160 Query 145589 AACCGAGCCTCGTCAACGACCACACAGCTATTGACGGCGATCGACGCCAAATTACAAACT 145648 | | | | ||| | | || | | | |||||| ||||||| || || || Sbjct 26161 TAGCAGTCGTTCTCATAGTCGACGAACTGAGGCAGGGCGATGGACGCCAGGTTGCAGACA 26220 Query 145649 GCCGTCTCCTCGGCGTCGCTGTATTGTACGATCTCGGCGCACAAATTGCTACATTTGATG 145708 || ||| || | | | ||| | | |||||| | ||| | ||| | |||| Sbjct 26221 GCAACCTCGTCAGGGGCAGAGTACTCGATGATCTCCGTGCAGAGGTTGGAGCTGCGGATG 26280 Query 145709 GTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGGT 145768 || ||||| || | ||| || || || | |||| ||||||||| |||||| | || Sbjct 26281 GTGCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGTGGTCCTTGTACAGCATGAATGGG 26340 Query 145769 CCGCCAGTCTCCACCTGCGTCTCCACGATAAAACGGTGCAAGTCCTGCGCACGCACCTGC 145828 ||| ||||| ||||| ||| | ||| | || | ||| || || | Sbjct 26341 TTGCCGGTCTCGGTCTGCGCCTCGAGGATGGCATACCACAGCTTCTGTGCCTTCAAGGTC 26400 Query 145829 TGCTGGTAGCGGCCCTCTTCTTCGTATTTCCTGTAGAGCTCCTCAAACGCGGAACCGTAG 145888 | |||| ||| ||||| || || ||| ||| | |||| ||| | |||||| Sbjct 26401 TTCTGGCCGCGACCCTCGCGCTCATACTTCTCGTACAAGGCCTCGAACTCCTCGCCGTAG 26460 Query 145889 CAATCGGACAGGCCGGGACACTTGTTGGGACACATCAGCGACCATACGCCGTTGGCGTTG 145948 || |||| |||||||||||||| |||||| ||||| || | ||| ||||||| | Sbjct 26461 CAGTCGGCCAGGCCGGGACACTCGTTGGGGCACATAAGGGTCCAGTCGCCGTTCTTCTCC 26520 Query 145949 ACGCGCTCCATAAACAAATCTGGCACCCACAGCGCGTACATCAAGTCGCGCGCTTTGCAA 146008 || |||| ||| || | ||| || | ||| || || | | ||| || || | Sbjct 26521 ACACGCTTCATGAAGAGATCAGGGATCCAGAGGGCCAGGAAGAGGTCACGAGCACGGACC 26580 Query 146009 TCCTCAGCACCCATGTT-TCGCTTCAAATTAAGCACACT-ATAGATGTCCGCGTGCCACG 146066 || || || ||| | || || | || | ||| ||| || |||||||||| Sbjct 26581 TCTTCCTTTCCGTGGTTCTTGC-GCAGGTCGAGGA-ACTCGAAGACATCAGCGTGCCACG 26638 Query 146067 GTTCAATATAGACGGCGAGGGCTCCTTTTCG---TTTGCCACCCTGGTCCACGTGACGTA 146123 | || | |||| ||| | ||| || || |||||||||||||| |||| || Sbjct 26639 GCTCCAGGTAGATGGCAAAGGCACCGGGGCGCTTGTTGCCACCCTGGTCGACGTAGCGAG 26698 Query 146124 CCATGTTGTTAAAGACGCGCACCATGGGCTCGACGCCGCTGGCTACGCCGTTCGTAGAGT 146183 | ||||||| ||||| |||| |||||| || ||| | | |||||| || | Sbjct 26699 CAGTGTTGTTGAAGACACGCAGCATGGGGATGATGCCATTAGACGTGCCGTTGGTGCCGG 26758 Query 146184 TTATTCTGGTGCCGCGGGAGCGCACGCAATGAACATTCACGCCGAGACCGCCGCCGTACT 146243 || || ||| || || | || || ||||| | || | || ||| | || Sbjct 26759 CAATATAGGAGCCAGTGGCACGGATGCGGTGGACATTGAGACCAATGCCTCCGGCCATCT 26818 Query 146244 TGGATATAGCGGCGCAGTCGCCGAGCGTCTCGTAGATGCCGTCAATGCTATC--GCTTCG 146301 |||| || ||| ||| ||| || || ||||| || || |||||||| |||| Sbjct 26819 TGGAGATCATGGCACAGGTCTTGAGGGTGTCATAGATACCCTCGATGCTATCCTCCTTC- 26877 Query 146302 AATGCCGAGCAGAAAGCACGAGCACATCTGCGCCATCGGCGTCCCCGCCGAGAACAACGT 146361 ||| | | || |||||||| ||| ||| ||| ||||| || || ||| | || Sbjct 26878 -ATGTCCACTAGGAAGCACGATGACAGCTGTGCCTGAGGCGTGCCGGCGTTGAATAGAGT 26936 Query 146362 CGGGCTCGCGTGCGT-AAACATTTTTCGGCTCATCATCCGATACGTTTCGA-TAGCGTCT 146419 ||| ||||| || || | || | || | | || || || | | | ||| Sbjct 26937 CGGCGAAGCGTGTGTGAAGAACTTGTTGGAGAGGTAGTTG-TAGGTCTCCAGAACCCTCT 26995 Query 146420 TGAATGTCGTCGCCATGAATGCCCAAAGCGACGCGCATGAGCATGTGTTGGGGCCGCTCC 146479 | |||| ||| || ||||| | ||||| ||||| |||||||| || |||||||| Sbjct 26996 CG-ATGTTGTCTCCCCAGATGCCAACGGCGACACGCATCAGCATGTGCTGTGGCCGCTCG 27054 Query 146480 GCCACTTGATTGTCAATCTTTAACAAATAGCCGTTCTCCAGGGTTTTGTATCCGAAAAAT 146539 | || | || | ||| | | ||| | ||||||||| ||| | ||||| || Sbjct 27055 ACGACCTTGCCGTTGAGCTTGAGGAGATACGAGCGCTCCAGGGTCTTGAAGCCGAAGTAT 27114 Query 146540 TTGTACGTATAGTCTACGGCATGGTCGATAGC 146571 | ||| |||||| | ||| | |||| || Sbjct 27115 TGGTATTGGTAGTCTCGGTCATAGACGATGGC 27146 >seq757 Length=325751 Score = 134 bits (148), Expect = 1e-26 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| ||||| || | || | ||| |||||||| ||||||||||| ||| | Sbjct 30060 CCACCACGCAGGCGCAGGACCAGGTGCAGGGTGGACTCCTTCTGAATGTTGTAGTCGGAC 30001 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| |||||| ||||||||||| || |||| | ||||||||||| || ||| Sbjct 30000 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCTGGGGGG 29941 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| |||||| ||||| | || | || |||| ||||| | Sbjct 29940 ATGCCCTCCTTGTCCTGGATTTTGGCCTTGACATTGTCGATGGTGTCGGATGACTCCACC 29881 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGA 131236 || | ||| | || || || || || || || ||||| |||||||||| Sbjct 29880 TCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCATGA 29832 >seq1543 Length=161075 Score = 132 bits (146), Expect = 5e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| ||||||||| || || | ||||||||||| ||||||||||| || Sbjct 71486 CCACCACGCAGACGCAGCACCAAGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCTGAG 71545 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || ||||| ||||||||||| ||| |||| | |||||||||||| || ||| Sbjct 71546 AGTGTCCGGCCATCCTCCAGCTGCTTGCCCGCGAAGATGAGACGCTGCTGGTCTGGTGGG 71605 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| || || ||| | | || | ||||| | ||||||| Sbjct 71606 ATACCCTCCTTGTCCTGAATCTTGGCCTTCACGTTGTCAATTGTATCCGAAGACTCGACC 71665 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 |||| || | ||| || ||||| || || || ||||| ||||||||| Sbjct 71666 TCGAGAGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATG 71713 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || |||| ||| || || | || | ||| |||||||| || |||||||| ||| Sbjct 71942 CCGCCACGCAGACGGAGGACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 72001 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| |||||| ||||||||||| ||| | || | ||||||||||| |||||| Sbjct 72002 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAAATCAGGCGCTGCTGGTCAGGAGGG 72061 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| || || ||| | | || | || |||| |||||||| Sbjct 72062 ATGCCCTCCTTGTCCTGAATCTTGGCCTTCACGTTGTCGATGGTGTCGGAGGACTCGACC 72121 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | ||| || ||||| || || || ||||| |||||||| Sbjct 72122 TCAAGAGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 72168 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||||||||| | || || || | || | || |||||||| || |||||||| ||| Sbjct 71713 GCCACCGCGGAGGCGAAGGACGAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGA 71772 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | ||| || |||||| |||||||| || || |||| | ||||||||||| || || Sbjct 71773 GAGGGTACGGCCGTCCTCGAGCTGCTTTCCAGCAAAGATGAGGCGCTGCTGGTCTGGGGG 71832 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| || || ||||| || || ||| | | || | || |||| |||||||| Sbjct 71833 GATACCCTCCTTGTCCTGAATCTTGGCCTTCACGTTGTCGATGGTGTCGGAGGACTCGAC 71892 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| ||| | ||| || ||||| || || || ||||| |||||||| Sbjct 71893 CTCGAGGGTGATGGTCTTGCCGGTGAGCGTCTTGACGAAGATCTGCAT 71940 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471999123429120