Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryphonectria_20radicalis_20[genbank_20GCA_5F002179595.1_202017-06- 08] 2,318 sequences; 41,022,676 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq1933 170 2e-37 seq1567 95.1 2e-14 >seq1933 Length=42650 Score = 170 bits (188), Expect = 2e-37 Identities = 459/694 (66%), Gaps = 20/694 (3%) Strand=Plus/Plus Query 63018 CCAGTCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTT 63077 |||| || ||||| || | || ||||| | | ||| || |||| | || ||| || | Sbjct 26468 CCAGGCCGGGACACTCGTTGGGGCACATAAGGGTCCAGTCGCCGTTCTTCTCCACACGCT 26527 Query 63078 TCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGT 63137 |||| ||||||||||| ||||| || || | || || || | | | || || | Sbjct 26528 TCATGAAGAGATCAGGGATCCAGAGGGCCAGGAAGAGGTCACGAGCACGGACCTCTTCCT 26587 Query 63138 TTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGT 63197 |||| ||||| || ||||||||| | | | ||||| |||||||| |||| || Sbjct 26588 TTCCGTGGTTCTTGCGCAGGTCGAGGAACTCGAAGACATCAGCGTGCCACGGCTCCAGGT 26647 Query 63198 ATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTAT 63257 | ||||| | | || || || ||||| || ||||| || | ||| | ||| ||||| | Sbjct 26648 AGATGGCAAAGGCACCGGGGCGCTTGTTGCCACCCTGGTCGACGTAGCGAGCAGTGTTGT 26707 Query 63258 TATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGC 63317 | | || | || ||| || || || ||||| || || || ||||| || | |||||| Sbjct 26708 TGAAGACACGCAGCATGGGGATGATGCCATTAGACGTGCCGTTGGTGCCGGCAATATAGG 26767 Query 63318 TTCCACTGGCACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGAT 63375 ||| ||||||| || | |||| ||||| || || || ||||| || ||||| Sbjct 26768 AGCCAGTGGCACGGATGCGGTGGACATTG--AGACCAATGCCTCCGGCCATCTTGGAGAT 26825 Query 63376 TAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAG 63435 | || || || | || |||||||| ||||| || ||||| ||| |||||| | Sbjct 26826 CATGGCACAGGTCTTGAGGGTGTCATAGATACCCTCGATGCTATCCTCCTTCATGTCCAC 26885 Query 63436 TAGAAAACAGCTAGACATTTGGTGAC-GACTAGTTCCCGCATTAAATAAGGTAGGAGAAG 63494 ||| || || |||| | ||| | || || || || || |||| || || |||| Sbjct 26886 TAGGAAGCACGATGACAGCT-GTGCCTGAGGCGTGCCGGCGTTGAATAGAGTCGGCGAAG 26944 Query 63495 CGTGAGTAAACCATTTTTCAGA-AAGTAGATTGTACGTCTCAATAGCTGAGTCTATAT-- 63551 |||| || || | || | || | |||| ||||| ||||| | | | || || | Sbjct 26945 CGTGTGTGAAGAACTTGTTGGAGAGGTAG-TTGTAGGTCTCCAGAACCCTCTCGATGTTG 27003 Query 63552 ----CCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACG 63607 |||| |||| || || ||||||||||| | ||||||||| || | || ||| Sbjct 27004 TCTCCCCA--GATG----CCAACGGCGACACGCATCAGCATGTGCTGTGGCCGCTCGACG 27057 Query 63608 ATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTG 63667 | |||| ||| | || | | || || |||| || || || || || || | | Sbjct 27058 ACCTTGCCGTTGAGCTTGAGGAGATACGAGCGCTCCAGGGTCTTGAAGCCGAAGTATTGG 27117 Query 63668 TATGAAAAGTCTCGTTCGTAAATAATAACCGAGT 63701 ||| ||||||| || || | || |||||| Sbjct 27118 TATTGGTAGTCTCGGTCATAGACGATGGCCGAGT 27151 >seq1567 Length=91444 Score = 95.1 bits (104), Expect = 2e-14 Identities = 152/218 (70%), Gaps = 3/218 (1%) Strand=Plus/Minus Query 32652 AACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAA 32711 |||| || || ||||| || |||||||||||||| | | || | |||||||| Sbjct 45315 AACAGCAGGCAGGCGAAGTCAGTATGTAGACCCTCGTCACGAGAGATCAGCTCGTTGGAG 45256 Query 32712 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCA 32771 || || || || ||||| ||||||||||| || ||||| || ||||| || || | || Sbjct 45255 AAGGTCAGACCAGGCATCAGGCCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCGCCG 45196 Query 32772 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGG---CG 32828 ||||| || || || || || || || || | ||| | || | || || | Sbjct 45195 CTGAAGAAGATACCCTCGACGGCAGCGAATGCGACAAGGCGCTGCGCGTAGGTGGACTCC 45136 Query 32829 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTT 32866 | ||| || |||||| | ||||||| ||||||||||| Sbjct 45135 CGGTCCTGGATCCACCTCAGAGCCCAGTCGGCCTTCTT 45098 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633613640512800