Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryphonectria_20radicalis_20[genbank_20GCA_5F002179595.1_202017-06-
08] 2,318 sequences; 41,022,676 total letters
Query= NC_008291.1
Length=198050
Score E
Sequences producing significant alignments: (Bits) Value
seq1933 170 2e-37
seq1567 95.1 2e-14
>seq1933
Length=42650
Score = 170 bits (188), Expect = 2e-37
Identities = 459/694 (66%), Gaps = 20/694 (3%)
Strand=Plus/Plus
Query 63018 CCAGTCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTT 63077
|||| || ||||| || | || ||||| | | ||| || |||| | || ||| || |
Sbjct 26468 CCAGGCCGGGACACTCGTTGGGGCACATAAGGGTCCAGTCGCCGTTCTTCTCCACACGCT 26527
Query 63078 TCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGT 63137
|||| ||||||||||| ||||| || || | || || || | | | || || |
Sbjct 26528 TCATGAAGAGATCAGGGATCCAGAGGGCCAGGAAGAGGTCACGAGCACGGACCTCTTCCT 26587
Query 63138 TTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGT 63197
|||| ||||| || ||||||||| | | | ||||| |||||||| |||| ||
Sbjct 26588 TTCCGTGGTTCTTGCGCAGGTCGAGGAACTCGAAGACATCAGCGTGCCACGGCTCCAGGT 26647
Query 63198 ATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTAT 63257
| ||||| | | || || || ||||| || ||||| || | ||| | ||| ||||| |
Sbjct 26648 AGATGGCAAAGGCACCGGGGCGCTTGTTGCCACCCTGGTCGACGTAGCGAGCAGTGTTGT 26707
Query 63258 TATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGC 63317
| | || | || ||| || || || ||||| || || || ||||| || | ||||||
Sbjct 26708 TGAAGACACGCAGCATGGGGATGATGCCATTAGACGTGCCGTTGGTGCCGGCAATATAGG 26767
Query 63318 TTCCACTGGCACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGAT 63375
||| ||||||| || | |||| ||||| || || || ||||| || |||||
Sbjct 26768 AGCCAGTGGCACGGATGCGGTGGACATTG--AGACCAATGCCTCCGGCCATCTTGGAGAT 26825
Query 63376 TAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAG 63435
| || || || | || |||||||| ||||| || ||||| ||| |||||| |
Sbjct 26826 CATGGCACAGGTCTTGAGGGTGTCATAGATACCCTCGATGCTATCCTCCTTCATGTCCAC 26885
Query 63436 TAGAAAACAGCTAGACATTTGGTGAC-GACTAGTTCCCGCATTAAATAAGGTAGGAGAAG 63494
||| || || |||| | ||| | || || || || || |||| || || ||||
Sbjct 26886 TAGGAAGCACGATGACAGCT-GTGCCTGAGGCGTGCCGGCGTTGAATAGAGTCGGCGAAG 26944
Query 63495 CGTGAGTAAACCATTTTTCAGA-AAGTAGATTGTACGTCTCAATAGCTGAGTCTATAT-- 63551
|||| || || | || | || | |||| ||||| ||||| | | | || || |
Sbjct 26945 CGTGTGTGAAGAACTTGTTGGAGAGGTAG-TTGTAGGTCTCCAGAACCCTCTCGATGTTG 27003
Query 63552 ----CCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACG 63607
|||| |||| || || ||||||||||| | ||||||||| || | || |||
Sbjct 27004 TCTCCCCA--GATG----CCAACGGCGACACGCATCAGCATGTGCTGTGGCCGCTCGACG 27057
Query 63608 ATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTG 63667
| |||| ||| | || | | || || |||| || || || || || || | |
Sbjct 27058 ACCTTGCCGTTGAGCTTGAGGAGATACGAGCGCTCCAGGGTCTTGAAGCCGAAGTATTGG 27117
Query 63668 TATGAAAAGTCTCGTTCGTAAATAATAACCGAGT 63701
||| ||||||| || || | || ||||||
Sbjct 27118 TATTGGTAGTCTCGGTCATAGACGATGGCCGAGT 27151
>seq1567
Length=91444
Score = 95.1 bits (104), Expect = 2e-14
Identities = 152/218 (70%), Gaps = 3/218 (1%)
Strand=Plus/Minus
Query 32652 AACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAA 32711
|||| || || ||||| || |||||||||||||| | | || | ||||||||
Sbjct 45315 AACAGCAGGCAGGCGAAGTCAGTATGTAGACCCTCGTCACGAGAGATCAGCTCGTTGGAG 45256
Query 32712 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCA 32771
|| || || || ||||| ||||||||||| || ||||| || ||||| || || | ||
Sbjct 45255 AAGGTCAGACCAGGCATCAGGCCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCGCCG 45196
Query 32772 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGG---CG 32828
||||| || || || || || || || || | ||| | || | || || |
Sbjct 45195 CTGAAGAAGATACCCTCGACGGCAGCGAATGCGACAAGGCGCTGCGCGTAGGTGGACTCC 45136
Query 32829 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTT 32866
| ||| || |||||| | ||||||| |||||||||||
Sbjct 45135 CGGTCCTGGATCCACCTCAGAGCCCAGTCGGCCTTCTT 45098
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 633613640512800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |