Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryphonectria_20radicalis_20[genbank_20GCA_5F002179595.1_202017-06- 08] 2,318 sequences; 41,022,676 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq1567 131 3e-25 seq1658 107 4e-18 seq191 100 6e-16 >seq1567 Length=91444 Score = 131 bits (144), Expect = 3e-25 Identities = 285/424 (67%), Gaps = 6/424 (1%) Strand=Plus/Minus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||| | || ||||| ||||||||||||||||||||| | Sbjct 45573 TCGAAGAAGTTGGTCTTGCCGCCAAGGGAGATGTTCTCCATGAAGTCGAAGGGGTTGGAA 45514 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 | ||||| ||| | ||| || || |||| || ||||| || || ||||| | Sbjct 45513 GACTTGTAGACCTTCTCGTTGCCGAGGGCGACGAGGAGACGGTCGGCGACGAACTCAATG 45454 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742 ||||| |||||| | ||||||||| | || | ||| || | |||||| | | Sbjct 45453 TACTGCTTCATCAGGGTGGCGTTCATGCCGAGCAGGCCACAGGGCAGGGCCTCAGTCAGG 45394 Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCAC-CTGTGCCAG--AGAC 251799 || ||||| || || |||| || ||| | || |||| || | ||| | | | Sbjct 45393 AACTCCTTCTCAATGACAACGGCATCCGTGATGATAGCCTCTACGCGCTGCTTGCTGGGC 45334 Query 251800 AGCTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGTCG 251859 | ||||| ||| | ||| |||| || | | || | || ||||||||||| Sbjct 45333 CGGTTGTT---CAGGTGGGAGAACAGCAGGCAGGCGAAGTCAGTATGTAGACCCTCGTCA 45277 Query 251860 CGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCAG 251919 ||| ||| | ||||||||| | ||| |||||||||| ||||| ||| |||||||| Sbjct 45276 CGAGAGATCAGCTCGTTGGAGAAGGTCAGACCAGGCATCAGGCCACGCTTCTTGAGCCAG 45217 Query 251920 AAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAACAAGG 251979 ||||| | | |||| || ||| | | ||||||||| | |||| |||||| Sbjct 45216 AAGATGGAGGCGAAGGCGCCGCTGAAGAAGATACCCTCGACGGCAGCGAATGCGACAAGG 45157 Query 251980 CGCT 251983 |||| Sbjct 45156 CGCT 45153 >seq1658 Length=62640 Score = 107 bits (118), Expect = 4e-18 Identities = 140/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 279696 GTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTG 279755 || || || ||||| || || |||||||||||||| |||||| | |||||||| || | | Sbjct 57096 GTCGGCTCCCTGTCTGGCGGCTGGAAGATGAAGCTCGCCCTCGCCCGCGCCATGCTGCAG 57037 Query 279756 CGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCC 279815 ||||| || || || || || ||||| ||||||||| ||||| | ||||| | ||| Sbjct 57036 AAGGCCGACGTGCTCCTACTGGACGAGCCGACCAACCACCTGGACGTCGCCAACATCGCC 56977 Query 279816 TGGCTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGAC 279875 ||||| | | |||||| | | | | | | | ||| || ||||| |||||| Sbjct 56976 TGGCTGGAGAACTACCTCAAGACGCACCCGGACATCACCAGCCTGATCGTCTCCCACGAC 56917 Query 279876 TCTGGCTTCCTAGA 279889 || |||||||| || Sbjct 56916 TCGGGCTTCCTGGA 56903 Score = 86.0 bits (94), Expect = 1e-11 Identities = 132/188 (70%), Gaps = 8/188 (4%) Strand=Plus/Minus Query 280174 TCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACC- 280232 |||| || ||||| ||||| || ||||| ||||| ||||| | || || ||||||||| Sbjct 56615 TCATCGGCCCCAACGGTGCCGGCAAGTCGACCCTCATCAAGCTGCTCACGGGCGAGACCA 56556 Query 280233 ---CAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCT 280289 | || | || |||| |||||| |||||| | || || | || || Sbjct 56555 TCCCGAGCACCGGAAAGGTCGA----GAAGCACCCCAACCTCCGCATCGGGTATATCAAG 56500 Query 280290 CAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAG 280349 |||||||| | | ||| |||||| |||||||| | ||| || ||||| ||| | ||| Sbjct 56499 CAGCACGCCCTGGAGCACGTCGAGATGCACCTGGAGAAGACGCCCAACCAGTACCTGCAG 56440 Query 280350 TGGCGCTA 280357 |||||||| Sbjct 56439 TGGCGCTA 56432 >seq191 Length=140874 Score = 100 bits (110), Expect = 6e-16 Identities = 146/202 (72%), Gaps = 11/202 (5%) Strand=Plus/Minus Query 279702 TCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGTG-- 279759 || ||||| |||||||||||||||||||||||||| || ||| | || || | Sbjct 23358 TCCCTGTCTGGTGGTTGGAAGATGAAGCTGGCCCTGTGCCGTGCCGT----CTTCGAGAA 23303 Query 279760 --CCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTG 279817 ||||| |||| ||||| || ||||| ||||||||| ||||| || ||||| ||||| Sbjct 23302 CCCCGATATCCTGCTGCTGGACGAGCCTACCAACCACTTGGACGTCAAGAACGTGGCCTG 23243 Query 279818 GCTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTC 279877 ||| | | |||||||| | | | | || | ||| |||| || ||||||||||| Sbjct 23242 GCTCGAGGACTACCTAAAGA-ACAGCA-CCTG-CACCTCCATCATGGTTTCTCACGACTC 23186 Query 279878 TGGCTTCCTAGATGCCGTGTGC 279899 || ||||| | ||||||| Sbjct 23185 CGGTTTCCTGAACCGCGTGTGC 23164 Score = 87.8 bits (96), Expect = 4e-12 Identities = 117/160 (73%), Gaps = 2/160 (1%) Strand=Plus/Minus Query 280680 GGTCTGGACCCCGAGTTTACAACTCACTCTCGCATTCGCGGTCTTTCTGGAGGCCAGAAG 280739 |||||||| ||||| | ||||||| ||||| ||||| ||||| || ||| Sbjct 22338 GGTCTGGATGCCGAGCTGGTGTCTCACTCGCGCATGAAGGGTCTGTCTGGTGGTCAGCGT 22279 Query 280740 GTCAAACTTGTCATCGGAGCA-GCTCTGTGGCAACACCCTCACGTGATCGTTCTCGACGA 280798 ||||| | ||| | | || |||| |||||| | |||||| ||||||| |||||||| Sbjct 22278 GTCAAGGTCGTCCTTGCTGCTTGCTC-GTGGCAGCGACCTCACTTGATCGTGCTCGACGA 22220 Query 280799 GCCTACCAACTATCTGGACCGCGAGAGCCTGGGCGCTCTG 280838 ||| |||||||| |||||||| || ||| || || ||| Sbjct 22219 GCCCACCAACTACCTGGACCGTGACTCCCTCGGAGCCCTG 22180 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027806273889438