Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryphonectria_20radicalis_20[genbank_20GCA_5F002179595.1_202017-06-
08] 2,318 sequences; 41,022,676 total letters
Query= NC_008724.1
Length=288047
Score E
Sequences producing significant alignments: (Bits) Value
seq1543 179 7e-40
seq757 168 1e-36
seq1759 143 5e-29
seq1658 102 2e-16
seq1570 100 5e-16
seq191 86.0 1e-11
>seq1543
Length=161075
Score = 179 bits (198), Expect = 7e-40
Identities = 180/234 (77%), Gaps = 0/234 (0%)
Strand=Plus/Plus
Query 68228 TTAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATA 68287
||| | ||| || || || |||| |||||||| ||||| ||||| || || ||||| ||
Sbjct 71479 TTACTGTCCACCACGCAGACGCAGCACCAAGTGCAGCGTCGACTCCTTCTGAATGTTGTA 71538
Query 68288 ATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTC 68347
|| |||||||||| ||||| || | |||||| || ||||| ||||| | || |||||
Sbjct 71539 GTCTGAGAGTGTCCGGCCATCCTCCAGCTGCTTGCCCGCGAAGATGAGACGCTGCTGGTC 71598
Query 68348 GGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGA 68407
||||| || || |||||||| |||||||| ||||| ||| || || || || | ||
Sbjct 71599 TGGTGGGATACCCTCCTTGTCCTGAATCTTGGCCTTCACGTTGTCAATTGTATCCGAAGA 71658
Query 68408 TTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| || || | |||||||| || || ||||||||||||||||| ||||||||
Sbjct 71659 CTCGACCTCGAGAGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 71712
Score = 176 bits (194), Expect = 8e-39
Identities = 175/227 (77%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || || || | |||| ||| || |||||||| || |||||||| || ||||||
Sbjct 71942 CCGCCACGCAGACGGAGGACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 72001
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | || || || | |||||| |||||||| || || | || ||||| || ||
Sbjct 72002 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAAATCAGGCGCTGCTGGTCAGGAGGG 72061
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
||||| |||||||| |||||||| ||||| ||| ||||||||||| | || || ||
Sbjct 72062 ATGCCCTCCTTGTCCTGAATCTTGGCCTTCACGTTGTCGATGGTGTCGGAGGACTCGACC 72121
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| | |||||||| || || ||||||||||||||||| ||||||||
Sbjct 72122 TCAAGAGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 72168
Score = 167 bits (184), Expect = 4e-36
Identities = 173/227 (76%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| ||||| ||||| | || | ||| || || ||||| || |||||||| || ||||||
Sbjct 71714 CCACCGCGGAGGCGAAGGACGAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAG 71773
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | || || || | |||||| || || || ||||| | || ||||| || ||
Sbjct 71774 AGGGTACGGCCGTCCTCGAGCTGCTTTCCAGCAAAGATGAGGCGCTGCTGGTCTGGGGGG 71833
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| || |||||||| |||||||| ||||| ||| ||||||||||| | || || ||
Sbjct 71834 ATACCCTCCTTGTCCTGAATCTTGGCCTTCACGTTGTCGATGGTGTCGGAGGACTCGACC 71893
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| | ||||||||| || || ||||| ||||||||||| ||||||||
Sbjct 71894 TCGAGGGTGATGGTCTTGCCGGTGAGCGTCTTGACGAAGATCTGCAT 71940
>seq757
Length=325751
Score = 168 bits (186), Expect = 1e-36
Identities = 176/231 (76%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || ||||||| |||| ||| || |||||||| || || ||||| || |||||
Sbjct 30060 CCACCACGCAGGCGCAGGACCAGGTGCAGGGTGGACTCCTTCTGAATGTTGTAGTCGGAC 30001
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | || || || | |||||| || || || || || | || ||||| || ||
Sbjct 30000 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCTGGGGGG 29941
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
||||| |||||||| || || || |||||||| ||||||||||| | ||| || ||
Sbjct 29940 ATGCCCTCCTTGTCCTGGATTTTGGCCTTGACATTGTCGATGGTGTCGGATGACTCCACC 29881
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465
|| | |||||| || || |||||||||||||||||||| |||||||| |||
Sbjct 29880 TCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCATGATG 29830
>seq1759
Length=81252
Score = 143 bits (158), Expect = 5e-29
Identities = 139/179 (78%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333
|| |||||||| || |||||||| || | ||||| || | |||||| |||||||| ||
Sbjct 66847 TTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAGATC 66906
Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393
| || || ||||| || |||||||| |||||||| || ||||| ||||| ||| |||
Sbjct 66907 AATCGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTAACGTTGTCG 66966
Query 68394 ATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAA 68452
|||||||| | || || || || | |||||| || || ||||| |||||||| |||||
Sbjct 66967 ATGGTGTCGGAAGACTCCACCTCGAGGGTGATAGTCTTGCCCGTCAGGGTCTTCACGAA 67025
>seq1658
Length=62640
Score = 102 bits (112), Expect = 2e-16
Identities = 139/194 (72%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 225445 GTCAAGGAAGCCAGAGTCGTGGGACACAATGATGGACGACACGTTCGTCAGGCCCTTGAG 225504
||| |||||||| ||||||||||| || || | | | | || || | ||||||
Sbjct 56902 GTCCAGGAAGCCCGAGTCGTGGGAGACGATCAGGCTGGTGATGTCCGGGTGCGTCTTGAG 56961
Query 225505 GTGCGTGATGAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAG 225564
|| | ||||| || | |||| |||||||| |||||| || || |||||||| ||
Sbjct 56962 GTAGTTCTCCAGCCAGGCGATGTTGGCGACGTCCAGGTGGTTGGTCGGCTCGTCCAGTAG 57021
Query 225565 CAGGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCC 225624
|| | ||| || | || |||||||| | ||| | |||||||| |||||||| ||
Sbjct 57022 GAGCACGTCGGCCTTCTGCAGCATGGCGCGGGCGAGGGCGAGCTTCATCTTCCAGCCGCC 57081
Query 225625 GGACAGGGAGCCGA 225638
|||||||||||||
Sbjct 57082 AGACAGGGAGCCGA 57095
Score = 91.5 bits (100), Expect = 3e-13
Identities = 142/203 (70%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 224978 TACCGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAA 225037
|| |||||||| | |||||||||||| ||| | |||||||| |||| | || | |
Sbjct 56432 TAGCGCCACTGCAGGTACTGGTTGGGCGTCTTCTCCAGGTGCATCTCGACGTGCTCCAGG 56491
Query 225038 GCATGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCGAGTC 225097
|| ||||| | ||| | ||||| | |||||| |||||| || || ||
Sbjct 56492 GCGTGCTGCTTGATATACCCGATGCGGAGGTTGGGGTGCTTCTCGACCTTTCCGGTGCTC 56551
Query 225098 GGTTGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCA 225157
|| | |||||| ||||| | ||||||||| || | |||||| ||||| ||||||||
Sbjct 56552 GGGATGGTCTCGCCCGTGAGCAGCTTGATGAGGGTCGACTTGCCGGCACCGTTGGGGCCG 56611
Query 225158 ATCACGCCAATCCGGGATGACAT 225180
|| | | | | ||||| |||||
Sbjct 56612 ATGATGGCCACGCGGGACGACAT 56634
>seq1570
Length=104125
Score = 100 bits (110), Expect = 5e-16
Identities = 190/272 (70%), Gaps = 11/272 (4%)
Strand=Plus/Plus
Query 275303 GGTTTCAA-TATCTCGTGCGCGACAACCGGCCGCATATGAAGAAGGCCGGCAACCTCCGG 275361
|| ||||| || |||| || ||| |||| || | |||||||||| ||||| || ||
Sbjct 47426 GGCTTCAACTACATCGTCCGAGACGACCGACCCCGCCTGAAGAAGGCAGGCAATCTGCGA 47485
Query 275362 TCCGCCTTTACCAAGACAGACGGCGAATTCTTTGTCATCTTTGACGCCGACTTCTGCCCA 275421
| || ||| | | || | || || |||||||||||||||||||| |||||||||||
Sbjct 47486 TGGGCGTTTGCAAGAACCGCTGGGGAGTTCTTTGTCATCTTTGACGCAGACTTCTGCCCC 47545
Query 275422 AGGCCCGACTTCCTC---GAGGAGACACTTG-GCAGGATGAAGGCAGATCCCACGATTGC 275477
|||| ||||| ||| ||| || ||| ||| || | | || || || |||
Sbjct 47546 CGGCCAGACTTGCTCCGCGAGCTGATCGTTGAGCACCTCGACGAC-GA---CAAGACTGC 47601
Query 275478 CATCTTCCAAACTCCCCAGTTCTT-CGAGCAGCGCAATGAGCAGAACTACGTGGAGAAGG 275536
|||| | || | ||||||||||| || | || | ||||||| | || || |||
Sbjct 47602 CATCGTGCAGAGCCCCCAGTTCTTCCGCGTCACG-GACGAGCAGACGTGGGTCGAACAGG 47660
Query 275537 GAGCCGGCGCCGTCCAGGAGCTCTTCTATCGC 275568
| || || ||| ||||| |||||||| |||
Sbjct 47661 GTGCTGGAGCCACGCAGGAACTCTTCTACCGC 47692
>seq191
Length=140874
Score = 86.0 bits (94), Expect = 1e-11
Identities = 162/238 (68%), Gaps = 3/238 (1%)
Strand=Plus/Plus
Query 225770 GCGTCAATGTCGTGGTCCACGTACACCGTCCGGAGCTGAGAAGCATCGGGGAAGCCCTCC 225829
|| || | |||||| || ||| | || ||| || || ||| | |||||| |||||
Sbjct 23498 GCATCCAGGTCGTGCTCGACGAAGACGGTCTTGACCTCAGACTGCTTGGGGAAACCCTCG 23557
Query 225830 AGCTGGCCATTTGCAATCGCACGGAGCAGGGTACTCTTGCCCGCGCCGTTGGGACCGATG 225889
| ||| | || || || || | |||||| ||| || || ||||| |||||| |
Sbjct 23558 ACCTGCTCGTTGTTGATAGCGCGCATGAGGGTAGACTTTCCAGCACCGTTAGGACCGCAG 23617
Query 225890 AGGCCGTAATGATTCCCGCGCTTGATGTTGAGGCGCGTGGAGTTCAGGAGGATCTTGCCA 225949
|||||||| | ||||| ||| ||||| || | |||||||||||||| |
Sbjct 23618 AGGCCGTAGCGGCGGCCGCGGATGAGCTTGAGCTTGGTCTCGGTCAGGAGGATCTTGGCG 23677
Query 225950 CCATAGGCAAGGGAGAACTCGCAATCGCACAGGTCCT---CACCCTCCTCGGTCTCCT 226004
| ||||| || ||||||||| ||||| || ||| || | |||||| ||||||
Sbjct 23678 GCGTAGGCGAGCGAGAACTCGGTCTCGCAGAGAACCTCGCCATCGTCCTCGATCTCCT 23735
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 921595695990960
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