Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryphonectria_20radicalis_20[genbank_20GCA_5F002179595.1_202017-06- 08] 2,318 sequences; 41,022,676 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq1543 179 7e-40 seq757 168 1e-36 seq1759 143 5e-29 seq1658 102 2e-16 seq1570 100 5e-16 seq191 86.0 1e-11 >seq1543 Length=161075 Score = 179 bits (198), Expect = 7e-40 Identities = 180/234 (77%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 68228 TTAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATA 68287 ||| | ||| || || || |||| |||||||| ||||| ||||| || || ||||| || Sbjct 71479 TTACTGTCCACCACGCAGACGCAGCACCAAGTGCAGCGTCGACTCCTTCTGAATGTTGTA 71538 Query 68288 ATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTC 68347 || |||||||||| ||||| || | |||||| || ||||| ||||| | || ||||| Sbjct 71539 GTCTGAGAGTGTCCGGCCATCCTCCAGCTGCTTGCCCGCGAAGATGAGACGCTGCTGGTC 71598 Query 68348 GGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGA 68407 ||||| || || |||||||| |||||||| ||||| ||| || || || || | || Sbjct 71599 TGGTGGGATACCCTCCTTGTCCTGAATCTTGGCCTTCACGTTGTCAATTGTATCCGAAGA 71658 Query 68408 TTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || || | |||||||| || || ||||||||||||||||| |||||||| Sbjct 71659 CTCGACCTCGAGAGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 71712 Score = 176 bits (194), Expect = 8e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | |||| ||| || |||||||| || |||||||| || |||||| Sbjct 71942 CCGCCACGCAGACGGAGGACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 72001 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| |||||||| || || | || ||||| || || Sbjct 72002 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAAATCAGGCGCTGCTGGTCAGGAGGG 72061 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| |||||||| ||||| ||| ||||||||||| | || || || Sbjct 72062 ATGCCCTCCTTGTCCTGAATCTTGGCCTTCACGTTGTCGATGGTGTCGGAGGACTCGACC 72121 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||||| || || ||||||||||||||||| |||||||| Sbjct 72122 TCAAGAGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 72168 Score = 167 bits (184), Expect = 4e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| ||||| | || | ||| || || ||||| || |||||||| || |||||| Sbjct 71714 CCACCGCGGAGGCGAAGGACGAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAG 71773 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| || || || ||||| | || ||||| || || Sbjct 71774 AGGGTACGGCCGTCCTCGAGCTGCTTTCCAGCAAAGATGAGGCGCTGCTGGTCTGGGGGG 71833 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| |||||||| ||||| ||| ||||||||||| | || || || Sbjct 71834 ATACCCTCCTTGTCCTGAATCTTGGCCTTCACGTTGTCGATGGTGTCGGAGGACTCGACC 71893 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||||||| || || ||||| ||||||||||| |||||||| Sbjct 71894 TCGAGGGTGATGGTCTTGCCGGTGAGCGTCTTGACGAAGATCTGCAT 71940 >seq757 Length=325751 Score = 168 bits (186), Expect = 1e-36 Identities = 176/231 (76%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||||| |||| ||| || |||||||| || || ||||| || ||||| Sbjct 30060 CCACCACGCAGGCGCAGGACCAGGTGCAGGGTGGACTCCTTCTGAATGTTGTAGTCGGAC 30001 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| || || || || || | || ||||| || || Sbjct 30000 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCTGGGGGG 29941 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || || || |||||||| ||||||||||| | ||| || || Sbjct 29940 ATGCCCTCCTTGTCCTGGATTTTGGCCTTGACATTGTCGATGGTGTCGGATGACTCCACC 29881 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465 || | |||||| || || |||||||||||||||||||| |||||||| ||| Sbjct 29880 TCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCATGATG 29830 >seq1759 Length=81252 Score = 143 bits (158), Expect = 5e-29 Identities = 139/179 (78%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333 || |||||||| || |||||||| || | ||||| || | |||||| |||||||| || Sbjct 66847 TTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAGATC 66906 Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393 | || || ||||| || |||||||| |||||||| || ||||| ||||| ||| ||| Sbjct 66907 AATCGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTAACGTTGTCG 66966 Query 68394 ATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAA 68452 |||||||| | || || || || | |||||| || || ||||| |||||||| ||||| Sbjct 66967 ATGGTGTCGGAAGACTCCACCTCGAGGGTGATAGTCTTGCCCGTCAGGGTCTTCACGAA 67025 >seq1658 Length=62640 Score = 102 bits (112), Expect = 2e-16 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 225445 GTCAAGGAAGCCAGAGTCGTGGGACACAATGATGGACGACACGTTCGTCAGGCCCTTGAG 225504 ||| |||||||| ||||||||||| || || | | | | || || | |||||| Sbjct 56902 GTCCAGGAAGCCCGAGTCGTGGGAGACGATCAGGCTGGTGATGTCCGGGTGCGTCTTGAG 56961 Query 225505 GTGCGTGATGAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAG 225564 || | ||||| || | |||| |||||||| |||||| || || |||||||| || Sbjct 56962 GTAGTTCTCCAGCCAGGCGATGTTGGCGACGTCCAGGTGGTTGGTCGGCTCGTCCAGTAG 57021 Query 225565 CAGGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCC 225624 || | ||| || | || |||||||| | ||| | |||||||| |||||||| || Sbjct 57022 GAGCACGTCGGCCTTCTGCAGCATGGCGCGGGCGAGGGCGAGCTTCATCTTCCAGCCGCC 57081 Query 225625 GGACAGGGAGCCGA 225638 ||||||||||||| Sbjct 57082 AGACAGGGAGCCGA 57095 Score = 91.5 bits (100), Expect = 3e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 224978 TACCGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAA 225037 || |||||||| | |||||||||||| ||| | |||||||| |||| | || | | Sbjct 56432 TAGCGCCACTGCAGGTACTGGTTGGGCGTCTTCTCCAGGTGCATCTCGACGTGCTCCAGG 56491 Query 225038 GCATGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCGAGTC 225097 || ||||| | ||| | ||||| | |||||| |||||| || || || Sbjct 56492 GCGTGCTGCTTGATATACCCGATGCGGAGGTTGGGGTGCTTCTCGACCTTTCCGGTGCTC 56551 Query 225098 GGTTGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCA 225157 || | |||||| ||||| | ||||||||| || | |||||| ||||| |||||||| Sbjct 56552 GGGATGGTCTCGCCCGTGAGCAGCTTGATGAGGGTCGACTTGCCGGCACCGTTGGGGCCG 56611 Query 225158 ATCACGCCAATCCGGGATGACAT 225180 || | | | | ||||| ||||| Sbjct 56612 ATGATGGCCACGCGGGACGACAT 56634 >seq1570 Length=104125 Score = 100 bits (110), Expect = 5e-16 Identities = 190/272 (70%), Gaps = 11/272 (4%) Strand=Plus/Plus Query 275303 GGTTTCAA-TATCTCGTGCGCGACAACCGGCCGCATATGAAGAAGGCCGGCAACCTCCGG 275361 || ||||| || |||| || ||| |||| || | |||||||||| ||||| || || Sbjct 47426 GGCTTCAACTACATCGTCCGAGACGACCGACCCCGCCTGAAGAAGGCAGGCAATCTGCGA 47485 Query 275362 TCCGCCTTTACCAAGACAGACGGCGAATTCTTTGTCATCTTTGACGCCGACTTCTGCCCA 275421 | || ||| | | || | || || |||||||||||||||||||| ||||||||||| Sbjct 47486 TGGGCGTTTGCAAGAACCGCTGGGGAGTTCTTTGTCATCTTTGACGCAGACTTCTGCCCC 47545 Query 275422 AGGCCCGACTTCCTC---GAGGAGACACTTG-GCAGGATGAAGGCAGATCCCACGATTGC 275477 |||| ||||| ||| ||| || ||| ||| || | | || || || ||| Sbjct 47546 CGGCCAGACTTGCTCCGCGAGCTGATCGTTGAGCACCTCGACGAC-GA---CAAGACTGC 47601 Query 275478 CATCTTCCAAACTCCCCAGTTCTT-CGAGCAGCGCAATGAGCAGAACTACGTGGAGAAGG 275536 |||| | || | ||||||||||| || | || | ||||||| | || || ||| Sbjct 47602 CATCGTGCAGAGCCCCCAGTTCTTCCGCGTCACG-GACGAGCAGACGTGGGTCGAACAGG 47660 Query 275537 GAGCCGGCGCCGTCCAGGAGCTCTTCTATCGC 275568 | || || ||| ||||| |||||||| ||| Sbjct 47661 GTGCTGGAGCCACGCAGGAACTCTTCTACCGC 47692 >seq191 Length=140874 Score = 86.0 bits (94), Expect = 1e-11 Identities = 162/238 (68%), Gaps = 3/238 (1%) Strand=Plus/Plus Query 225770 GCGTCAATGTCGTGGTCCACGTACACCGTCCGGAGCTGAGAAGCATCGGGGAAGCCCTCC 225829 || || | |||||| || ||| | || ||| || || ||| | |||||| ||||| Sbjct 23498 GCATCCAGGTCGTGCTCGACGAAGACGGTCTTGACCTCAGACTGCTTGGGGAAACCCTCG 23557 Query 225830 AGCTGGCCATTTGCAATCGCACGGAGCAGGGTACTCTTGCCCGCGCCGTTGGGACCGATG 225889 | ||| | || || || || | |||||| ||| || || ||||| |||||| | Sbjct 23558 ACCTGCTCGTTGTTGATAGCGCGCATGAGGGTAGACTTTCCAGCACCGTTAGGACCGCAG 23617 Query 225890 AGGCCGTAATGATTCCCGCGCTTGATGTTGAGGCGCGTGGAGTTCAGGAGGATCTTGCCA 225949 |||||||| | ||||| ||| ||||| || | |||||||||||||| | Sbjct 23618 AGGCCGTAGCGGCGGCCGCGGATGAGCTTGAGCTTGGTCTCGGTCAGGAGGATCTTGGCG 23677 Query 225950 CCATAGGCAAGGGAGAACTCGCAATCGCACAGGTCCT---CACCCTCCTCGGTCTCCT 226004 | ||||| || ||||||||| ||||| || ||| || | |||||| |||||| Sbjct 23678 GCGTAGGCGAGCGAGAACTCGGTCTCGCAGAGAACCTCGCCATCGTCCTCGATCTCCT 23735 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921595695990960