Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryphonectria_20radicalis_20[genbank_20GCA_5F002179595.1_202017-06- 08] 2,318 sequences; 41,022,676 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq1933 500 2e-136 seq1567 291 2e-73 >seq1933 Length=42650 Score = 500 bits (554), Expect = 2e-136 Identities = 1248/1875 (67%), Gaps = 70/1875 (4%) Strand=Plus/Plus Query 243741 TGAACTGGACGGGTGCGACGGCGGCCTTGGTCCTCAGGTAGTACATGCCGGTCTTGAGTC 243800 ||||||| | || || | || |||| ||| | |||||||||||||| |||||||| | Sbjct 25289 TGAACTGAATCGGGGCTGCCGCCGCCTGGGTGCGGAGGTAGTACATGCCAGTCTTGAGAC 25348 Query 243801 CACTGGACCAGGCGTGGAGGTGCATGGCCGTCAGCTTCTTCATCTTGAGCTTTGGGTCGT 243860 | ||| || || ||||||| ||| | ||| ||| || ||| Sbjct 25349 CCAGCTTCCATCCGGTGAAGTGCATGCTCGTGATCTTGCCCATA--GAA-----GGT--- 25398 Query 243861 CCTCGCACAGAAAGAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCC-CGCTCTGCG 243919 || | || || ||| |||||||| |||||||| ||| | |||| || || ||| Sbjct 25399 --TCACGCATGTGGATGTTCAGGGACTGAGACTGGTCGATGAAAG-CGCCACGGTCGGCG 25455 Query 243920 GCCATGGTGATGA-GGTCCTTCTGAGATATCTCATACGCCGTCTTGTAGATGGGCTTGAG 243978 ||||| || || |||||| ||| || ||||| | | |||||||||| || ||||| Sbjct 25456 GCCATCTGGACGATGGTCCT-CTGCGAGATCTCCCAGACGGTCTTGTAGAGGGCCTTGAT 25514 Query 243979 GTGCTCGGGGAACCCTTCGA-TGTTCTGCACCGAGCCCTTGTGGACGATGAGCTGGGTGC 244037 | || |||| | | ||| ||||||| | || || | | | |||||| || | Sbjct 25515 ATCATCCGGGATGC-TGCGAATGTTCTGGATAGAACCATCCTCGGCGATGATGCGGTTCT 25573 Query 244038 GCATGTTATCGTTCCACAGGCCCAAGCGCTCCAGCGCCTCGACCAGGTGCCTGTTCACCA 244097 || || ||| |||||| || | || | || ||| || ||| ||| |||| Sbjct 25574 TCAGGTCCTCGGACCACAGACCACACTGCACAAGGTCCTTGAGCAGCCATGGGTTGACCA 25633 Query 244098 CCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATGC 244157 |||| ||||| || | ||||| || |||||||||| |||| || ||||| | || Sbjct 25634 CCTGGAACTCACCAGCGAGCACACGCCGCTGGTAGATGTTGGACGTGTAGGGCTCAAAGC 25693 Query 244158 TCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAGAC 244217 ||| |||||||||| ||||||| || ||||| ||||| |||| || || || | Sbjct 25694 ACTCGTTGTTGCCCAGGATCTGCGAGGTCGAGGCAGTGGGCATAGGCGCCATCAACAAGC 25753 Query 244218 TGTTCCTCACGCCGTGCCTCTGGATGCGGAGTCTGAGCTCGTTCCAGTCCCACATGCCCG 244277 |||| | ||||| ||| || ||| | | || ||| ||||||||| | | ||| Sbjct 25754 TGTTGCGGACGCCATGCTGCTTGATCTTGGCCTTCAGGGCGTCCCAGTCCCAGAGGTCCG 25813 Query 244278 AGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGCTGACGGGGC 244337 || | | | |||| | |||||||||| |||| || | |||| ||||| Sbjct 25814 AGGGCT--TGACGTT----GTCCCACATGTCGTACTGAAGGATACCCTGAGAAACGGGAG 25867 Query 244338 TGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTTACAGCTCTCGTCGAGGG 244397 |||||||| | | |||||||||||| || ||| | | || || ||||| Sbjct 25868 ATCCCTCGTACGACAAGTAGGGACCGTCCACCTTGGCAATGTCGCACGATGCGGTGAGGG 25927 Query 244398 CGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTT-GCCGCAGGTG 244456 |||||| |||||||||||| |||||| |||||||| | ||||||| | || | | Sbjct 25928 CGGCGTGGTAGATGGTCTCAAAGATCTGCTTGTTCAGCTGACGGGCCTCAGGCG-ACTCG 25986 Query 244457 AAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGT 244516 ||||| | || | || |||| | || ||||| ||||| ||||| | |||||| || Sbjct 25987 AAGGGCAGGCGGAGAGCCAAGAAGGCATCAGCCAGACCCTGAACGCCCACGCCGATAGGG 26046 Query 244517 CTGTGTCGCTTGTTGGAGC-GCATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGATCAC 244575 | ||| ||| ||||| | || | || | || || || || ||||| |||| | Sbjct 26047 CGGTGGCGCATGTTGCTGTTGCGAGCCTCCTGG-ACAGGATAGTAGTTGATATCGACGAT 26105 Query 244576 CTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGAAAGTCGTACTC 244635 |||||| ||||||||| || | || ||| ||| ||||||||| |||| ||| Sbjct 26106 CTTGTTCAGGTTGCGGACGACAACTTGGGTGACTTCGTGCAGCAGCTGGAAGTTGTAGCA 26165 Query 244636 GTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACGCTGGCCAGGTT 244695 || | || | | ||| | |||| ||||||| | |||||||| Sbjct 26166 GTCGTTCTCATAGTCGACG------------AACTGAGGCAGGGCGATGGACGCCAGGTT 26213 Query 244696 GCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCA 244755 |||||| || ||||| || | | | ||||| || ||||| ||||||||||| || Sbjct 26214 GCAGACAGCAACCTCGTCAGGGGCAGAGTACTCGATGATCTCCGTGCAGAGGTTGGAGCT 26273 Query 244756 CTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCAT 244815 |||||||||||||| || || ||| |||| |||| | ||||||||| ||||| Sbjct 26274 GCGGATGGTGCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGTGGTCCTTGTACAGCAT 26333 Query 244816 GAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTT 244875 ||| || ||||||||| ||| || |||||| | | ||| || | | ||||| Sbjct 26334 GAATGGGTTGCCGGTCTCGGTCTGCGCCTCGAGGATGGCATACCACAGCTTCTGTGCCTT 26393 Query 244876 GACCGTCCTGCGAGCCTTG-CCCTCTGCCTCGTAGCGGGTGTACAGGGCCTCGAACTCGG 244934 | || || | ||| | ||||| ||| || ||||| |||||||||||| Sbjct 26394 CAAGGT-CTTCTGGCCGCGACCCTCGCGCTCATACTTCTCGTACAAGGCCTCGAACTCCT 26452 Query 244935 GGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACTCCACTCGCCGC 244994 ||| || ||| | |||||||| ||| |||||||| || |||| |||||| Sbjct 26453 CGCCGTAGCAGTCGGCCAGGCCGGGACACTCGTTGGGGCACATAAGGGTCCAGTCGCCGT 26512 Query 244995 CGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGG 245054 | || || | || ||||||||| || ||||||||||||||| |||||||||| | | Sbjct 26513 TCTTCTCCACACGCTTCATGAAGAGATCAGGGATCCAGAGGGCCAGGAAGAGGTCACGAG 26572 Query 245055 TCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGT 245114 | ||| ||| || |||||| | ||| || | || || ||||| || ||| Sbjct 26573 CACGGACCTCTTCCTTTCCGTGGTTCTTGCGCAGGTCGAGGAACTCGAAGACATCAGCGT 26632 Query 245115 GCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCACCA 245174 |||| ||||||| ||||| || | ||| ||||| ||||||||||| |||||||| | Sbjct 26633 GCCACGGCTCCAGGTAGATGGCAAAGGCACCGGGGCGCTTGTTGCCACCCTGGTCGA--- 26689 Query 245175 TCCTCTCGAGC----GCGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTAGAGTGGCCG 245230 | | ||||| |||||||| ||||| | || | ||||| ||||| |||| Sbjct 26690 -CGTAGCGAGCAGTGTTGTTGAAGACACGCAGCATGGGGATGATGCCATTAGACGTGCCG 26748 Query 245231 TTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGACAT----GCCTAG 245286 |||||||| || |||| ||| || | | || ||| | ||||||| || | Sbjct 26749 TTGGTGCCGGCAATATAGGAGCCAGTGGCAC---GGATGC-GGTGGACATTGAGACCAAT 26804 Query 245287 TCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCCCTCCAT 245346 || ||||| ||||||||| | ||| ||| |||||| |||||| || ||||| || Sbjct 26805 GCCTCCGGCCATCTTGGAGATCATGGCACAGGTCTTGAGGGTGTCATAGATACCCTCGAT 26864 Query 245347 GCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGGCTGCACGA 245406 ||| ||| |||||||| | || ||||| || |||||||| | || || ||| | Sbjct 26865 GCTATCCTCCTTCATGTCCACTAGGAAGCACGATGACAGCTGTGCCTGAGGCGTGCCGGC 26924 Query 245407 GTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTAGCGGCTCGAGAGGAACCCGTACGTCTG 245466 |||||| ||||| || ||||| || ||| | | | |||||| | ||| |||| Sbjct 26925 GTTGAATAGAGTCGGCGAAGCGTGTGTGAAGAACTTGTTGGAGAGGTAGTTGTAGGTCTC 26984 Query 245467 GAGCAGAGCGTCGATGTTGTCGCCGTGGATCTGCAGGGCGCACCTCATGAGGGTGTGCTG 245526 || | ||||||||||| || ||| | |||| | ||| || ||||||| Sbjct 26985 CAGAACCCTCTCGATGTTGTCTCCCCAGATGCCAACGGCGACACGCATCAGCATGTGCTG 27044 Query 245527 GGGCGTCTCGATGGGTCCCTCGGGTCCCTTGAGCATG------TAGGAGCGCTCGAGCGT 245580 ||| ||||| | ||| | || |||||| || || |||||||| || || Sbjct 27045 TGGCCGCTCGACG---ACCTTG---CCGTTGAGCTTGAGGAGATACGAGCGCTCCAGGGT 27098 Query 245581 CTTGAACCCAAAGTA 245595 |||||| || ||||| Sbjct 27099 CTTGAAGCCGAAGTA 27113 >seq1567 Length=91444 Score = 291 bits (322), Expect = 2e-73 Identities = 383/519 (74%), Gaps = 15/519 (3%) Strand=Plus/Plus Query 42633 CCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACG 42692 || |||||| |||||||| |||||||| || | |||||| || | || | || Sbjct 45086 CCTTGCATCCGCAAGAAGGCCGACTGGGCTCTGAGGTGGATCCAGGACCGGGAGTCCACC 45145 Query 42693 TTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTC 42752 | || || | || || || || | ||||||||||| ||||||||| ||||||||| Sbjct 45146 TACGCGCAGCGCCTTGTCGCATTCGCTGCCGTCGAGGGTATCTTCTTCAGCGGCGCCTTC 45205 Query 42753 GCCTCCATCTTCTGGCTCAAGCAGAAGGTGTC--GATGCCCGGACTCACCTTCTCGAACG 42810 ||||||||||||||||||||| || ||| | |||||| || || |||||||| |||| Sbjct 45206 GCCTCCATCTTCTGGCTCAAGAAG--CGTGGCCTGATGCCTGGTCTGACCTTCTCCAACG 45263 Query 42811 AACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCC 42870 | || ||| | |||||||| || |||| ||||| |||||||| |||||||| || Sbjct 45264 AGCTGATCTCTCGTGACGAGGGTCTACATACTGACTTCGCCTGCCTGCTGTTCTC---CC 45320 Query 42871 ACCTCAGGCACAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGA 42930 |||| | || |||| ||| |||| || ||| ||||||||||| ||||| | | Sbjct 45321 ACCTGAACAACCGGCCCAGCAAGCAGCGCGTAGAGGCTATCATCACGGATGCCGTTGTCA 45380 Query 42931 TCGAGAAGGAGTTCCTCACGCAGTCGCTGCCC-GTGTCCCTGGTCGGCATGAACCACGAC 42989 | |||||||||||||| || || | |||||| ||| |||| ||||||||||| | | Sbjct 45381 TTGAGAAGGAGTTCCTGACTGAGGCCCTGCCCTGTG-GCCTGCTCGGCATGAACGCCACC 45439 Query 42990 CTCATGTGCAAGTACATCCAGTACGTCGCCGACCATCTCCT-GT-GCCAGATGGGTCTC- 43046 || ||| ||||||| ||| ||||||||||| |||||| || ||| | || | Sbjct 45440 CTGATGAAGCAGTACATTGAGTTCGTCGCCGACCGTCTCCTCGTCGCC--CTCGGCAACG 45497 Query 43047 AGCCGCCTCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGC 43106 || | ||||||| | | |||||||||||| |||||||||||||| | | ||| Sbjct 45498 AGAAG-GTCTACAAGTCTTCCAACCCCTTCGACTTCATGGAGAACATCTCCCTTGGCGGC 45556 Query 43107 AAGACCAACTTTTTCGAGAAGCGCGTCGCCGACTACCAG 43145 ||||||||||| ||||||||||| || | ||||||||| Sbjct 45557 AAGACCAACTTCTTCGAGAAGCGTGTTGGTGACTACCAG 45595 Score = 127 bits (140), Expect = 4e-24 Identities = 229/333 (69%), Gaps = 5/333 (2%) Strand=Plus/Plus Query 42300 ATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTG 42359 |||||| |||||||||||| || ||| |||||| || ||||||||||| ||| Sbjct 44688 ATCTGGCAGATGTACAAGAAGCACGAGGCATCCTTCTGGACTGCTGAGGAGATTGATCTG 44747 Query 42360 GCCAAGGACACGGCCGGCTGGGAGTCACTGTCTGAGAA----CGAAAAGTTTTTCCTCAA 42415 |||||||| | || |||| | || | |||| | ||| || | ||| || Sbjct 44748 TCCAAGGACCTGCACGACTGGAACA-ACCGCCTGACCAATGACGAGAAATACTTCATCTC 44806 Query 42416 AAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAG 42475 |||| || |||||||| |||||||| |||||||| ||||| |||||| || | | Sbjct 44807 CCACATCCTCGCCTTCTTTGCCGCCTCGGACGGCATTGTCAACGAGAACTTGATCGAGCG 44866 Query 42476 GTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCAT 42535 |||| ||||| ||| |||||| || ||||||||||||||||||| || Sbjct 44867 CTTCAGCGCTGAGGTTCAGATTCCTGAGGCCCGTTGCTTCTACGGCTTCCAGACCATGAT 44926 Query 42536 AGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGT 42595 |||||| | ||||| ||| ||| || ||| || |||| || ||| ||| || Sbjct 44927 GGAGAACATCCACTCCGAGACATACTCCCTCCTGATCGACACCTATATCAAGGAGCCTAC 44986 Query 42596 CGAGCGTAACGGGCTGTTCAAGGCCATGGAGAC 42628 | |||| | | |||||||| || || ||||| Sbjct 44987 CCAGCGCACCTACCTGTTCAATGCTATCGAGAC 45019 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944311837771680