Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryphonectria_20radicalis_20[genbank_20GCA_5F002179595.1_202017-06- 08] 2,318 sequences; 41,022,676 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq1933 264 1e-65 seq1057 82.4 9e-11 >seq1933 Length=42650 Score = 264 bits (292), Expect = 1e-65 Identities = 1100/1712 (64%), Gaps = 34/1712 (2%) Strand=Plus/Plus Query 113565 TGAACTGAAT-GGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGC 113623 |||||||||| ||| || ||| |||| | |||||||||||||| || |||||||| Sbjct 25289 TGAACTGAATCGGGGCT-GCCGCCGCCTGGGTGCGGAGGTAGTACATGCCAGTCTTGAGA 25347 Query 113624 CCCTGCTTCCAGGCATACATATGCATCGAGGACAACTTGGAGAGTGTTGGACTTTC---C 113680 ||| ||||||| | | ||||| | | |||| | | || ||| | Sbjct 25348 CCCAGCTTCCATCCGGTGAAGTGCATGCTCGTGATCTTGCCCATAGAAGG---TTCACGC 25404 Query 113681 ATGAAGAGGTTCATACTTTGGGATTGATCGATGAA-GCGTCCACGATCCGCCGCCATATC 113739 ||| || ||||| || || || |||||||| ||| ||||| || || ||||| | Sbjct 25405 ATGTGGATGTTCAGGGACTGAGACTGGTCGATGAAAGCG-CCACGGTCGGCGGCCATCTG 25463 Query 113740 AATCACATCCTTCATCTTGATTTCCCACACAGTTCTGTAGAGGTTCTTAATATCATCTGG 113799 | | | || | ||| ||||| || || |||||||| ||| |||||||| || Sbjct 25464 GACGATGGTCCTCTGCGAGATCTCCCAGACGGTCTTGTAGAGGGCCTTGATATCATCCGG 25523 Query 113800 GATATCCACGA-TATTTTGGATGGAGCCACCCGCCTTGACCATGAGATCCTTCATATCCT 113858 ||| | ||| | || ||||| || ||| || | || ||| | | ||||| |||| Sbjct 25524 GATG-CTGCGAATGTTCTGGATAGAACCATCCTCGGCGATGATGCGGTTCTTCAGGTCCT 25582 Query 113859 TTGACCAGAGACCAATCTTTTTGAGATCCTCCACGAG--ATGCTTATTGACAACAACAAA 113916 ||||| |||||| || || |||| | || ||| | |||| || || Sbjct 25583 CGGACCACAGACCACACTGCACAAGGTCCTTGAGCAGCCATGGGT--TGACCACCTGGAA 25640 Query 113917 CTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGGCTCAAAGCACTCATT 113976 |||||| ||||| || | | | ||||| |||| |||||| |||||||||||||| || Sbjct 25641 CTCACCAGCGAGCACACGCCGCTGGTAGATGTTGGACGTGTAGGGCTCAAAGCACTCGTT 25700 Query 113977 GTTACCCAAGATTTGGGCGGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACG 114036 ||| |||| ||| || | ||| ||||| |||||||| || ||||| | | |||||| || Sbjct 25701 GTTGCCCAGGATCTGCGAGGTCGAGGCAGTGGGCATAGGCGCCATCAACAAGCTGTTGCG 25760 Query 114037 GAGACCCTTTTCCCTAATGCGTTCCTTGAGGGCGTCCCAGTCGTAGTTGAGCTTTGTCT- 114095 || || | | | | || |||| |||||||||||||| || | | | || Sbjct 25761 GACGCCATGCTGCTTGATCTTGGCCTTCAGGGCGTCCCAGTCCCAGAGGTCCGAGGGCTT 25820 Query 114096 --CCCCCTGCCACATATCAAACTGGAGGATACCTTGGGAGGCTGGCGATCCCTCAAATGT 114153 | | |||||| || |||| |||||||| || || | || |||||||| | | Sbjct 25821 GACGTTGTCCCACATGTCGTACTGAAGGATACCCTGAGAAACGGGAGATCCCTCGTACGA 25880 Query 114154 CTCGTATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACAT 114213 | ||| || || || |||| || | ||| | || |||||| ||||| || || Sbjct 25881 CAAGTAGGGACCGTCCACCTTGGCAATGTCGCACGATGCGGTGAGGGCGGCGTGGTAGAT 25940 Query 114214 TGTCTCAAAAATGCGAGCATTCA-TTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGC 114272 |||||||| || | |||| || | |||||| || || || | || ||| Sbjct 25941 GGTCTCAAAGATCTGCTTGTTCAGCTGAC-GGGCCTCAGGCGACTCGAAGGGCAGGCGGA 25999 Query 114273 ACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATAT 114332 | || |||| || ||||| || || || | ||| || ||||| || | ||| | Sbjct 26000 GAGCCAAGAAGGCATCAGCCAGACCCTGAACGCCCACGCCGATAGGGCGGTGGCGCATGT 26059 Query 114333 TAGACTTTCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTT 114392 | || ||||| || || ||||| | || |||||| | | | || || || Sbjct 26060 TGCTGTTGCGAGCCTCCTGGACAGGATAGTAGTTGATATCGACGATCTTGTTCAGGTTGC 26119 Query 114393 TGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCAT 114452 | |||||| | |||| ||| || ||| | | | | | | | |||| | | Sbjct 26120 GGACGACAACTTGGGTGACTTCGTGCAGCAGCTGGAAGTTGTAGCAGTCGTTCTCATAGT 26179 Query 114453 TGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAG 114512 ||| ||| ||| |||||||| |||||||| || || |||| ||| || ||| Sbjct 26180 CGACGAACTGAGGCAGGGCGATGGACGCCAGGTTGCAGACAGCAACCTCGTCAGGGGCAG 26239 Query 114513 TGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGAT 114572 |||||| || || ||||| || | || || || |||||||||| |||||| || | Sbjct 26240 AGTACTCGATGATCTCCGTGCAGAGGTTGGAGCTGCGGATGGTGCCCAGGTTCTTCTGGT 26299 Query 114573 TTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGG 114632 | ||| ||| |||||||| |||||| |||| | || ||||| || || | Sbjct 26300 TGCTCTTGCGGTTGGCGTGGTCCTTGTACAGCATGAATGGGTTGCCGGTCTCGGTCTGCG 26359 Query 114633 ACTTGAGAATAGCCTTCCAGA-CATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCC 114691 || ||| || || | ||| | | || | | || || || | | | || ||||| Sbjct 26360 CCTCGAGGATGGCATACCACAGCTTCTGTGCCT-TCAAGGTCTTCTGGCCGCGACCCTCG 26418 Query 114692 TCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGT 114751 ||| ||||| ||| | ||| || ||||| || || | || | || || || Sbjct 26419 CGCTCATACTTCTCGTACAAGGCCTCGAACTCCTCGCCGTAGCAGTCGGCCAGGCCGGGA 26478 Query 114752 GCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACACGCTTCATGAAGAGG 114811 || | ||||| | || | ||| | || || ||| ||||||||||||||||| Sbjct 26479 CACTCGTTGGGGCACATAAGGGTCCAGTCGCCGTTCTTCTCCACACGCTTCATGAAGAGA 26538 Query 114812 TCTGGGATCCAGAGAGCTGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTG 114871 || ||||||||||| || |||||| || ||| || | ||||| | || || || Sbjct 26539 TCAGGGATCCAGAGGGCCAGGAAGAGGTCACGAGCACGGACCTCTTCCTTTCCGTGGTTC 26598 Query 114872 AGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATT 114931 |||| || | || || | || ||| ||||||||||| |||||||| | || | Sbjct 26599 TTGCGCAGGTCGAGGAACTCGAAGACATCAGCGTGCCACGGCTCCAGGTAGATGGCAAAG 26658 Query 114932 G-AC-----CCCTTACGACGACCAGCCTGGTTTACATACCTCGCTGTGGCATTAAATACG 114985 | || | ||| | | ||| |||||| || || | || ||| || || || Sbjct 26659 GCACCGGGGCGCTT--GTTG-CCACCCTGGTCGACGTAGCGAGCAGTGTTGTTGAAGACA 26715 Query 114986 CGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTATTG 115045 || ||||| || ||||| |||| ||| ||| || || || |||| || | || Sbjct 26716 CGCAGCATGGGGATGATGCCATTAGACGTGCCGTTGGTGCCGGCAATATAGGAGCCAGTG 26775 Query 115046 GCTCTGACATCATGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCAC 115105 || | || |||| | | |||||| || || ||| ||| ||||| || || Sbjct 26776 GCACGGATGCGGTGGACATTGAGACCAATGCCTCCGGCCATCTTGGAGATCATGGCACAG 26835 Query 115106 TCCGTGAGACTGCCGTAGATCCCGTCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAG 115165 | |||| || | ||||| || ||||| || |||| | | | |||||||| Sbjct 26836 GTCTTGAGGGTGTCATAGATACCCTCGATGCTATCCTCCTTCATGTCCACTAGGAAGCAC 26895 Query 115166 CTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAAC 115225 |||| |||| | || || || |||||||| || || || | ||||| |||| Sbjct 26896 GATGACAGCTGTGCCTGAGGCGTGCCGGCGTTGAATAGAGTCGGCGAAGCGTGTGTGAAG 26955 Query 115226 ATACCT-TGGGACATCTTATCGTAGGTCTCCA 115256 | || | | ||| | | | ||||||||||| Sbjct 26956 A-ACTTGTTGGAGAGGTAGTTGTAGGTCTCCA 26986 >seq1057 Length=53502 Score = 82.4 bits (90), Expect = 9e-11 Identities = 175/259 (68%), Gaps = 2/259 (1%) Strand=Plus/Plus Query 10966 GGCGTCAATTTCATCGATGAAAACGATACACGGTTGATTTTCACGGGCAACTTCAAAGAT 11025 ||| ||||| || || ||||| ||||| || || || | ||||| |||||| Sbjct 21602 GGCATCAATCTCGTCAATGAAGACGATGCAGGGCGCGTTCTTCCGGGCCTGCGCAAAGAG 21661 Query 11026 ATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAAATTGGCGGCG-GAAC 11084 || || |||||| |||||||||||| |||||||| || || || | || | || || Sbjct 21662 GTCGCGCACTCTCGAGGCACCGACACCGACAAACATCTCGACGAATTCGGAGCCGCTGAC 21721 Query 11085 ATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCG 11144 | | || ||| || ||| || ||||| ||| | || |||||| || ||||| || | Sbjct 21722 ACT-GAAGAACGGCACGCCCGACTCACCGGCGGTCGCCTTGGCGAGCAGCGTCTTACCAG 21780 Query 11145 TCCCAGGTTTCCCTGCGAGAAGGGCACCACGTGGGATCCTGGCACCACTTCCAAAGTAGC 11204 | || || || | | | ||| ||||| || ||| |||| || || | ||| Sbjct 21781 TACCGGGCGGGCCAGACAAGATGGCGCCACGCGGAATCTTGGCGCCGAGTCGCTGGAAGC 21840 Query 11205 GCTCAGGTTGTTTAAGGAA 11223 |||| || || || ||||| Sbjct 21841 GCTCCGGCTGCTTCAGGAA 21859 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597336291679440