Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryphonectria_20radicalis_20[genbank_20GCA_5F002179595.1_202017-06- 08] 2,318 sequences; 41,022,676 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq757 122 9e-23 seq1543 114 1e-20 seq1759 93.3 5e-14 >seq757 Length=325751 Score = 122 bits (134), Expect = 9e-23 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 41994 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 42053 |||| |||| |||| ||| |||||| ||||| ||||| || | ||| || || || Sbjct 30048 CGCAGGACCAGGTGCAGGGTGGACTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCG 29989 Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTG 42113 || || |||||||| ||||| || || || ||||||||||| | || | || ||||||| Sbjct 29988 TCCTCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCTGGGGGGATGCCCTCCTTG 29929 Query 42114 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 42173 ||| |||||| |||| | | | |||||| || ||||| || | ||||| Sbjct 29928 TCCTGGATTTTGGCCTTGACATTGTCGATGGTGTCGGATGACTCCACCTCAAGGGTGATA 29869 Query 42174 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || |||||||| || ||||| || ||||| ||||| Sbjct 29868 GTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 29834 >seq1543 Length=161075 Score = 114 bits (126), Expect = 1e-20 Identities = 157/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||||| |||||| |||| || |||||| ||||| ||||| || | || ||||| | Sbjct 71497 ACGCAGCACCAAGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCTGAGAGTGTCCGGCC 71556 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 || || |||||||| || ||||| ||||| ||||||||||| | ||| | | |||||| Sbjct 71557 ATCCTCCAGCTGCTTGCCCGCGAAGATGAGACGCTGCTGGTCTGGTGGGATACCCTCCTT 71616 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGA 42171 |||| ||| | || | | ||| | | | || || || || || |||| |||| Sbjct 71617 GTCC-TGAATCTTGGCCTTCACGTTGTCAATTGTATCCGAAGACTCGACCTCGAGAGTGA 71675 Query 42172 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 |||| ||||| || || ||||| || ||||| ||||| Sbjct 71676 TGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 71712 Score = 107 bits (118), Expect = 2e-18 Identities = 141/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| || | || || || |||| || |||||||| ||||| || Sbjct 71749 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTACGGCCGTCCTCGAGCTGCTTTCCAGCAAA 71808 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 ||||| ||||||||||| | || | | |||||||||| ||| | || | | ||| Sbjct 71809 GATGAGGCGCTGCTGGTCTGGGGGGATACCCTCCTTGTCC-TGAATCTTGGCCTTCACGT 71867 Query 42137 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | |||||| || || || |||| |||||||| ||||| || |||||||| | Sbjct 71868 TGTCGATGGTGTCGGAGGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGCGTCTTGA 71927 Query 42196 CAAAGATTTGCAT 42208 | ||||| ||||| Sbjct 71928 CGAAGATCTGCAT 71940 Score = 100 bits (110), Expect = 3e-16 Identities = 150/209 (72%), Gaps = 3/209 (1%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| || | || || || |||| || |||||||| || ||||| Sbjct 71977 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 72036 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || || ||||||||||| | || | || |||||||||| ||| | || | | ||| Sbjct 72037 AATCAGGCGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCC-TGAATCTTGGCCTTCACGT 72095 Query 42137 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | |||||| || || || || | |||||||| ||||| || || ||||| | Sbjct 72096 TGTCGATGGTGTCGGAGGACTCGACCTCAAGAGTGATGGTCTTGCCGGTGAGGGTCTTGA 72155 Query 42196 CAAAGATTTGCATTTTCAC-GCCGAATAC 42223 | ||||| ||||| || || | |||| || Sbjct 72156 CGAAGATCTGCATCTTGACTGACGAAGAC 72184 >seq1759 Length=81252 Score = 93.3 bits (102), Expect = 5e-14 Identities = 132/183 (72%), Gaps = 2/183 (1%) Strand=Plus/Plus Query 42019 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 42078 |||| || || ||||| || | ||||| || | || || |||||||| || ||||| | Sbjct 66845 CCTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAGA 66904 Query 42079 TGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG 42138 | | |||||||||||| | || | || |||||||||| || | || | | | ||| | Sbjct 66905 TCAATCGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCC-TGGATCTTGGCCTTAACGTTG 66963 Query 42139 -CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 42197 | | |||||| || ||||| |||| ||||| || |||||||| || ||||| || Sbjct 66964 TCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATAGTCTTGCCCGTCAGGGTCTTCACG 67023 Query 42198 AAG 42200 ||| Sbjct 67024 AAG 67026 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543197060409120