Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryphonectria_20radicalis_20[genbank_20GCA_5F002179595.1_202017-06- 08] 2,318 sequences; 41,022,676 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq1933 376 2e-99 >seq1933 Length=42650 Score = 376 bits (416), Expect = 2e-99 Identities = 1097/1666 (66%), Gaps = 35/1666 (2%) Strand=Plus/Minus Query 93718 TACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGCAGG 93777 ||| | ||||| | |||||| || |||||| ||||| ||||||||| | | |||| | Sbjct 27119 TACCAATACTTCGGCTTCAAGACCCTGGAGCGCTCGTATCTCCTCAAGCTCAACGGCAAG 27060 Query 93778 GTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCACGAC 93837 || |||||| || || || |||||||||| |||||| | || || || || || Sbjct 27059 GTCGTCGAGCGGCCACAGCACATGCTGATGCGTGTCGCCGTTGGCATCTGGGGAGACAAC 27000 Query 93838 ATGCCGAATGTTTTGCGGGCTTTCAGAGACATGCGGGACAAGAGGTATACCATGGCCACC 93897 || || ||| || | | | || || | ||||| | || || | Sbjct 26999 ATCGAGAGGGTTCTGGAGACCTACAACTACCTCTCCAACAAGTTCTTCACACACGCTTCG 26940 Query 93898 CCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGATGACG 93957 ||||| || |||||||| || || || | ||||| |||| ||||| ||||| || Sbjct 26939 CCGACTCTATTCAACGCCGGCACGCCTCAGGCACAGCTGTCATCGTGCTTCCTAGTGGAC 26880 Query 93958 AACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCATCTCA 94017 | |||| || |||| || || | |||| ||||||| |||||| | ||||| Sbjct 26879 ATGAAGGAGGATAGCATCGAGGGTATCTATGACACCCTCAAGACCTGTGCCATGATCTCC 26820 Query 94018 AAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTACATC 94077 || || || || || || ||| ||||||| | | ||||||| || ||||| || Sbjct 26819 AAGATGGCCGGAGGCATTGGTCTCAATGTCCACCGCATCCGTGCCACTGGCTCCTATATT 26760 Query 94078 CGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAACGCG 94137 ||| ||||| ||||| || || ||| || |||| ||||| || |||||||||||| | Sbjct 26759 GCCGGCACCAACGGCACGTCTAATGGCATCATCCCCATGCTGCGTGTCTTCAACAACACT 26700 Query 94138 GCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTCGAG 94197 || |||||||| ||||||||||| | | | ||| | || || |||| || ||| Sbjct 26699 GCTCGCTACGTCGACCAGGGTGGCAACAAGCGCCCCGGTGCCTTTGCCATCTACCTGGAG 26640 Query 94198 CCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGATCTG 94257 || |||||||| || || | ||| |||||||||| ||||||||||| || || | Sbjct 26639 CCGTGGCACGCTGATGTCTTCGAGTTCCTCGACCTGCGCAAGAACCACGGAAAGGAAGAG 26580 Query 94258 GAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACGCGTC 94317 | | || | ||||||||| || |||||| | || || || || ||||| || || Sbjct 26579 GTCCGTGCTCGTGACCTCTTCCTGGCCCTCTGGATCCCTGATCTCTTCATGAAGCGTGTG 26520 Query 94318 GAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCCGACGTT 94377 ||||| ||| || ||||| ||| | || ||||| || |||||||| ||| ||||| Sbjct 26519 GAGAAGAACGGCGACTGGACCCTTATGTGCCCCAACGAGTGTCCCGGCCTGGCCGACTGC 26460 Query 94378 TGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGC-AGGG-CAAGGCCAGGA 94435 | || | || || | |||||| | || | | ||| |||| | ||||| || Sbjct 26459 TACGGCGAGGAGTTCGAGGCCTTGTACGAGAAGTATG-AGCGCGAGGGTCGCGGCCA-GA 26402 Query 94436 AGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGACGGGTA 94495 || || | || |||||||||| || ||| | || | ||| ||||| || | Sbjct 26401 AGACCTTGAAGGCACAGAAGCTGTGGTATGCCATCCTCGAGGCGCAGACCGAGACCGGCA 26342 Query 94496 CGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACCTCGGGG 94555 || | ||| ||| ||||||| | |||| |||| ||||||| || |||| || Sbjct 26341 ACCCATTCATGCTGTACAAGGACCACGCCAACCGCAAGAGCAACCAGAAGAACCTGGGCA 26282 Query 94556 TGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGACGAGATTG 94615 ||| ||||| || || ||||| ||||| ||||||| || | || |||||| ||| Sbjct 26281 CCATCCGCAGCTCCAACCTCTGCACGGAGATCATCGAGTACTCTGCCCCTGACGAGGTTG 26222 Query 94616 CTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGA-GATGCCTACACGTCT 94674 |||| || ||||||| |||||| |||| | ||||| ||| ||| ||| || Sbjct 26221 CTGTCTGCAACCTGGCGTCCATCGCCCTGCCTCAGTTCGT-CGACTATG--AGAACGACT 26165 Query 94675 ACTGCTTCGTTCGATCTGGAGGAGCTTGTGAACTTCGCGGGAAGGATGGTCTTGAACCTG 94734 || | | ||| | ||| | | ||| || | | | ||| |||||| Sbjct 26164 GCTACAAC-TTCCAGCTGCTGCA-----CGAA-GTCACCCAAGTTGTCGTCCGCAACCTG 26112 Query 94735 AACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACTCAAACCTGAAG 94794 |||| | | |||| | |||| ||| || |||| |||||| ||| ||| || Sbjct 26111 AACAAGATCGTCGATATCAACTACTATCCTGTCCAGGAGGCTCGCAACAGCAACATGCGC 26052 Query 94795 CATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGATGATGCGTCTG 94854 || || || |||||| | ||||| |||||| | || || || | || | || ||| Sbjct 26051 CACCGCCCTATCGGCGTGGGCGTTCAGGGTCTGGCTGATGCCTTCTTGGCTCTCCGCCTG 25992 Query 94855 CCCTACGACTCTGTCGAC-GCGGCGGGT---TTGAATTTGAACATATTCGAAAGCATTTA 94910 |||| ||| |||| | | ||| || |||| | | || || || | ||| || Sbjct 25991 CCCTTCGA----GTCGCCTGAGGCCCGTCAGCTGAACAAGCAGATCTTTGAGACCATCTA 25936 Query 94911 TTACGGGGCCATGAAACAATCCGTCCACTTGGCCAGATCGGACGGCGGGCCACACGAATC 94970 ||| ||| | | ||| | || | |||| || | ||| || || || Sbjct 25935 CCACGCCGCCCTCACCGCATCGTGCGACATTGCCA---AGGTGGACGGTCCCTACTTGTC 25879 Query 94971 GTTCCGCGGATCGCCCTTGGAACAGGGCATTTTTCAGTTCGACCTCTGGG---GTGTGAA 95027 || | ||||| ||| | ||||| || |||||| |||| | |||| || || Sbjct 25878 GTACGAGGGATCTCCCGTTTCTCAGGGTATCCTTCAGTACGACATGTGGGACAACGTCAA 25819 Query 95028 GCCCTCGGGTCTGTACGACTGGGAAGCTCTACGCGCTGATGTTATCAAACACGGTGTGAA 95087 |||||||| || | |||||||| || || || | | | | || || || Sbjct 25818 GCCCTCGGACCTCTGGGACTGGGACGCCCTGAAGGCCAAGATCAAGCAGCATGGCGTCCG 25759 Query 95088 AAACGCGCTGCTTG-TGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGCAACA 95146 ||| ||| ||| |||| || |||||||| ||||| || |||||||||| ||||||| Sbjct 25758 CAAC-AGCTTGTTGATGGCGCCTATGCCCACTGCCTCGACCTCGCAGATCCTGGGCAACA 25700 Query 95147 ACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGGGAAT 95206 |||||| || || |||| ||| |||||| | ||| | |||| |||||||| || || | Sbjct 25699 ACGAGTGCTTTGAGCCCTACACGTCCAACATCTACCAGCGGCGTGTGCTCGCTGGTGAGT 25640 Query 95207 TCCCCGTCATCAACAAGCACCTCCTACGGGACCTGACGTCTCTG-GGTGTGTGGGGTGAC 95265 ||| || ||||| || || |||||| | | || ||| ||||| || Sbjct 25639 TCCAGGTGGTCAACCCATGGCTGCTCAAGGACCTTGTG-CAGTGTGGTCTGTGGTCCGAG 25581 Query 95266 AAGGTCAAGAACCAACTGCTACGCGCCAACGGCTCCGTCCAGAACATCCCGCA-AATACC 95324 | | ||||||| | | || | || || |||||||||| |||| || || Sbjct 25580 GACCTGAAGAACCGCATCATCGCCGAGGATGGTTCTATCCAGAACAT-TCGCAGCATCCC 25522 Query 95325 GGAGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAG 95370 ||| || |||||||| |||||||||||||| ||||||||| ||||| Sbjct 25521 GGATGATATCAAGGCCCTCTACAAGACCGTCTGGGAGATCTCGCAG 25476 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494708865395280