Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryphonectria_20radicalis_20[genbank_20GCA_5F002179595.1_202017-06- 08] 2,318 sequences; 41,022,676 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq757 109 5e-19 seq1567 104 2e-17 seq1543 100 3e-16 >seq757 Length=325751 Score = 109 bits (120), Expect = 5e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| |||| || | || | | | |||||||| ||||||||||||||| | Sbjct 30060 CCACCACGCAGGCGCAGGACCAGGTGCAGGGTGGACTCCTTCTGAATGTTGTAGTCGGAC 30001 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||||||||| || || || | | |||| || ||||| ||||| || || Sbjct 30000 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCTGGGGGG 29941 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || || ||||| |||||| || | ||||| | | |||||||| |||||||| Sbjct 29940 ATGCCCTCCTTGTCCTGGATTTTGGCCTTGACATTGT-CGATGGTGTCGGATGACTCCAC 29882 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 ||| | || | || || || || || || || || || ||||||||| Sbjct 29881 CTCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCATG 29833 >seq1567 Length=91444 Score = 104 bits (114), Expect = 2e-17 Identities = 347/524 (66%), Gaps = 27/524 (5%) Strand=Plus/Plus Query 52326 GTGCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGC---GACACC 52382 || || ||| | ||||| ||||| | ||||| ||| ||||||| || | || || Sbjct 45083 GTTCCTTGCATCCGCAAGAAGGCCGACTGGGCTCTGAGGTGGATCCAGGACCGGGAGTCC 45142 Query 52383 GCC-ACGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGG 52441 || |||| || ||||| | || || ||||| |||||||| | || || ||| Sbjct 45143 ACCTACGC--GC--AGCGCCTTGTCGCATTCGCTGCCGTCGAGGGTATCTTCTTCAGCGG 45198 Query 52442 CAGCTTTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAG 52501 | ||| ||| ||||||| | | || | | ||| | ||||| || ||||| ||| Sbjct 45199 CGCCTTCGCCTCCATCTTCTGGCTCAAGAAGCGTGGCCTGATGCCTGGTCTGACCTTCTC 45258 Query 52502 CAACGAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCT-CTACTACA 52560 ||||||| |||| || || ||||| || || || || ||||| || ||||| || | Sbjct 45259 CAACGAGCTGATCTCTCGTGACGAGGGTCTACATACTGACTTCGCCTGCCTGCTGTT--- 45315 Query 52561 AGACGCGCGTGACC-GAAAAATTGGATTCGGACAC-GATCCT-GAGCATGT--TCAAGGA 52615 | | | ||| ||| || || | | | | | | ||| | | ||| ||| Sbjct 45316 ---CTCCC---ACCTGAACAACCGGCCCAGCAAGCAGCGCGTAGAGGCTATCATCACGGA 45369 Query 52616 GGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCAT 52675 || || | || || |||||||| | || | || ||||| | ||||| ||||| Sbjct 45370 TGCCGTTGTCATTGAGAAGGAGTTCCTGACTGAGGCCCTGCCCTGTGGCCTGCTCGGCAT 45429 Query 52676 GAACGCGCAGTCC-ATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGC 52734 |||||| || | ||| ||||||| ||||| || || || ||||| | || | Sbjct 45430 GAACGC-CACCCTGATGAAGCAGTACATTGAGTTCGTCGCCGACCGTCTCCTCGTCGCCC 45488 Query 52735 TCGGGCAGCCA-AAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCG 52793 |||| || | | ||| || ||| || ||| || || || || ||| | ||||| || Sbjct 45489 TCGG-CAACGAGAAGGTCTACAAGTCTTCCAACCCCTTCGACTTCATGGAGAACATCTCC 45547 Query 52794 CTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 |||| |||||||||||||| ||||||||||| || || || || Sbjct 45548 CTTGGCGGCAAGACCAACTTCTTCGAGAAGCGTGTTGGTGACTA 45591 >seq1543 Length=161075 Score = 100 bits (110), Expect = 3e-16 Identities = 142/196 (72%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| | ||||| ||||||||| || || || | | Sbjct 71747 GACTCCTTCTGGATGTTGTAGTCGGAGAGGGTACGGCCGTCCTCGAGCTGCTTTCCAGCA 71806 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539 |||| || ||||| ||||| || || ||||| || ||||| ||| | || | || | Sbjct 71807 AAGATGAGGCGCTGCTGGTCTGGGGGGATACCCTCCTTGTC-CTGAATCTTGGCCTTCAC 71865 Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 ||| || | |||||||| ||||| ||||||| || | || || || || || || | Sbjct 71866 GTTG-TCGATGGTGTCGGAGGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGCGTCT 71924 Query 138599 TTACAAAAATCTGCAT 138614 | || || |||||||| Sbjct 71925 TGACGAAGATCTGCAT 71940 Score = 93.3 bits (102), Expect = 4e-14 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 ||||| |||| ||| | || | || | | | |||||||| || |||||||||||| Sbjct 71942 CCGCCACGCAGACGGAGGACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 72001 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||||||||| || || |||| | || || ||||| ||||| ||||| Sbjct 72002 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAAATCAGGCGCTGCTGGTCAGGAGGG 72061 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565 || || || ||||| ||| | || | || | ||| || | |||||||| ||||| | Sbjct 72062 ATGCCCTCCTTGTC-CTGAATCTTGGCCTTCACGTTG-TCGATGGTGTCGGAGGACTCGA 72119 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| | || | || || || || || || || || || |||||||| Sbjct 72120 CCTCAAGAGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 72168 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496248020796960