Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryphonectria_20radicalis_20[genbank_20GCA_5F002179595.1_202017-06-
08] 2,318 sequences; 41,022,676 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq757 109 5e-19
seq1567 104 2e-17
seq1543 100 3e-16
>seq757
Length=325751
Score = 109 bits (120), Expect = 5e-19
Identities = 163/229 (71%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| || |||| |||| || | || | | | |||||||| ||||||||||||||| |
Sbjct 30060 CCACCACGCAGGCGCAGGACCAGGTGCAGGGTGGACTCCTTCTGAATGTTGTAGTCGGAC 30001
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| || || ||||||||| || || || | | |||| || ||||| ||||| || ||
Sbjct 30000 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCTGGGGGG 29941
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566
|| || || ||||| |||||| || | ||||| | | |||||||| ||||||||
Sbjct 29940 ATGCCCTCCTTGTCCTGGATTTTGGCCTTGACATTGT-CGATGGTGTCGGATGACTCCAC 29882
Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615
||| | || | || || || || || || || || || |||||||||
Sbjct 29881 CTCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCATG 29833
>seq1567
Length=91444
Score = 104 bits (114), Expect = 2e-17
Identities = 347/524 (66%), Gaps = 27/524 (5%)
Strand=Plus/Plus
Query 52326 GTGCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGC---GACACC 52382
|| || ||| | ||||| ||||| | ||||| ||| ||||||| || | || ||
Sbjct 45083 GTTCCTTGCATCCGCAAGAAGGCCGACTGGGCTCTGAGGTGGATCCAGGACCGGGAGTCC 45142
Query 52383 GCC-ACGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGG 52441
|| |||| || ||||| | || || ||||| |||||||| | || || |||
Sbjct 45143 ACCTACGC--GC--AGCGCCTTGTCGCATTCGCTGCCGTCGAGGGTATCTTCTTCAGCGG 45198
Query 52442 CAGCTTTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAG 52501
| ||| ||| ||||||| | | || | | ||| | ||||| || ||||| |||
Sbjct 45199 CGCCTTCGCCTCCATCTTCTGGCTCAAGAAGCGTGGCCTGATGCCTGGTCTGACCTTCTC 45258
Query 52502 CAACGAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCT-CTACTACA 52560
||||||| |||| || || ||||| || || || || ||||| || ||||| || |
Sbjct 45259 CAACGAGCTGATCTCTCGTGACGAGGGTCTACATACTGACTTCGCCTGCCTGCTGTT--- 45315
Query 52561 AGACGCGCGTGACC-GAAAAATTGGATTCGGACAC-GATCCT-GAGCATGT--TCAAGGA 52615
| | | ||| ||| || || | | | | | | ||| | | ||| |||
Sbjct 45316 ---CTCCC---ACCTGAACAACCGGCCCAGCAAGCAGCGCGTAGAGGCTATCATCACGGA 45369
Query 52616 GGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCAT 52675
|| || | || || |||||||| | || | || ||||| | ||||| |||||
Sbjct 45370 TGCCGTTGTCATTGAGAAGGAGTTCCTGACTGAGGCCCTGCCCTGTGGCCTGCTCGGCAT 45429
Query 52676 GAACGCGCAGTCC-ATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGC 52734
|||||| || | ||| ||||||| ||||| || || || ||||| | || |
Sbjct 45430 GAACGC-CACCCTGATGAAGCAGTACATTGAGTTCGTCGCCGACCGTCTCCTCGTCGCCC 45488
Query 52735 TCGGGCAGCCA-AAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCG 52793
|||| || | | ||| || ||| || ||| || || || || ||| | ||||| ||
Sbjct 45489 TCGG-CAACGAGAAGGTCTACAAGTCTTCCAACCCCTTCGACTTCATGGAGAACATCTCC 45547
Query 52794 CTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837
|||| |||||||||||||| ||||||||||| || || || ||
Sbjct 45548 CTTGGCGGCAAGACCAACTTCTTCGAGAAGCGTGTTGGTGACTA 45591
>seq1543
Length=161075
Score = 100 bits (110), Expect = 3e-16
Identities = 142/196 (72%), Gaps = 4/196 (2%)
Strand=Plus/Plus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|||||||| || |||||||||||| | ||||| ||||||||| || || || | |
Sbjct 71747 GACTCCTTCTGGATGTTGTAGTCGGAGAGGGTACGGCCGTCCTCGAGCTGCTTTCCAGCA 71806
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539
|||| || ||||| ||||| || || ||||| || ||||| ||| | || | || |
Sbjct 71807 AAGATGAGGCGCTGCTGGTCTGGGGGGATACCCTCCTTGTC-CTGAATCTTGGCCTTCAC 71865
Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598
||| || | |||||||| ||||| ||||||| || | || || || || || || |
Sbjct 71866 GTTG-TCGATGGTGTCGGAGGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGCGTCT 71924
Query 138599 TTACAAAAATCTGCAT 138614
| || || ||||||||
Sbjct 71925 TGACGAAGATCTGCAT 71940
Score = 93.3 bits (102), Expect = 4e-14
Identities = 160/229 (70%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
||||| |||| ||| | || | || | | | |||||||| || ||||||||||||
Sbjct 71942 CCGCCACGCAGACGGAGGACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 72001
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| || || ||||||||| || || |||| | || || ||||| ||||| |||||
Sbjct 72002 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAAATCAGGCGCTGCTGGTCAGGAGGG 72061
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565
|| || || ||||| ||| | || | || | ||| || | |||||||| ||||| |
Sbjct 72062 ATGCCCTCCTTGTC-CTGAATCTTGGCCTTCACGTTG-TCGATGGTGTCGGAGGACTCGA 72119
Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
|||| | || | || || || || || || || || || ||||||||
Sbjct 72120 CCTCAAGAGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 72168
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496248020796960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |