Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryphonectria_20radicalis_20[genbank_20GCA_5F002179595.1_202017-06- 08] 2,318 sequences; 41,022,676 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq1933 140 3e-28 seq757 114 1e-20 seq1543 109 5e-19 seq1759 102 8e-17 >seq1933 Length=42650 Score = 140 bits (154), Expect = 3e-28 Identities = 727/1138 (64%), Gaps = 33/1138 (3%) Strand=Plus/Plus Query 146041 ACGAGGGCCTTGATGAGATACTGGTTGACCACCTGAAACTCGCCGGCGAGAACGCGCCTC 146100 || ||| |||||| || | ||||||||||||| ||||| || ||||| || |||| | Sbjct 25603 ACAAGGTCCTTGAGCAGCCATGGGTTGACCACCTGGAACTCACCAGCGAGCACACGCCGC 25662 Query 146101 AGATACACGTTGCTGGTGAACGGCTCGAACGACTCGTTGTTACCGAGTATCTGCGCCGTC 146160 | || | |||| ||| | ||||| || |||||||||| || || ||||||| ||| Sbjct 25663 TGGTAGATGTTGGACGTGTAGGGCTCAAAGCACTCGTTGTTGCCCAGGATCTGCGAGGTC 25722 Query 146161 GTAGCGGTAGGCATGTACGCCACCAGCAAAGAGTTTCTCACGCCGTG-TCTTTGAATCTT 146219 | || || ||||| ||||| || ||| ||| | ||||| || | ||| ||||| Sbjct 25723 GAGGCAGTGGGCATAGGCGCCATCAACAAGCTGTTGCGGACGCCATGCTGCTTG-ATCTT 25781 Query 146220 TTCCCGTAGTTTGGACCAATTCCACAAATGATCCGTGGGATAGATATTGT---AGTTGTC 146276 || || | ||| | ||| | | |||| ||| | || |||| | |||| Sbjct 25782 GGCCTTCAGGGCGTCCCAGTCCCAGA---GGTCCGAGGGCTTGACGTTGTCCCACATGTC 25838 Query 146277 GTAATGCATAGTGCCGCG-GAACAGGGGGCTATTCTCGTACGATTCATAAGGACCGTCGA 146335 ||| || | | || | ||| ||| | | ||||||||| || |||||||| | Sbjct 25839 GTACTGAAGGATACCCTGAGAAACGGGAGAT-CCCTCGTACGACAAGTAGGGACCGTCCA 25897 Query 146336 TCTTGGCCAGTTCGCAGCTAGCTTCCAGAGCCGAAAAGTATATGGTCTCCGCGATCATGT 146395 |||||| | ||||| || || || | ||| |||||||| |||| | Sbjct 25898 CCTTGGCAATGTCGCACGATGCGGTGAGGGCGGCGTGGTAGATGGTCTCAAAGATCTGCT 25957 Query 146396 AGTTGACGCT-CCTGGCCTCCTCGCTGTCGTAGGGGATATCGAGAAGCACAAAGGCGTCG 146454 ||| | ||| | |||||| ||| |||| | |||| || ||||| || Sbjct 25958 TGTTCA-GCTGACGGGCCTCAGGCGACTCGAAGGGCAGGCGGAGAGCCAAGAAGGCATCA 26016 Query 146455 GCGAGACCCTGTATCCCGACACCAACGGGGCGGTGTTTCTTGTTACTGTTCGCAGCGCCC 146514 || |||||||| | || || || | |||||||| | |||| ||||| ||| || Sbjct 26017 GCCAGACCCTGAACGCCCACGCCGATAGGGCGGTGGCGCATGTTGCTGTTGCGAGCCTCC 26076 Query 146515 GCAGTGGGATAGTGGTTGCTGTCGATGATCTTGTTGAGATTACGCACGACAATTTTCGTC 146574 ||||||| |||| | |||| ||||||||| || || || ||||||| || || Sbjct 26077 TGGACAGGATAGTAGTTGATATCGACGATCTTGTTCAGGTTGCGGACGACAACTTGGGTG 26136 Query 146575 AAACGATTCAGCAGGACATAGTCAAATGTTTTAGTT-TTAACGTTGACGCACTTGTTGAC 146633 | | |||||| ||| | | | ||| | | || |||| ||| | Sbjct 26137 ACTTCGTGCAGCAGCTGGAAGTTGTA-GCAGTCGTTCTCATAGTCGACGAACTGAGGCAG 26195 Query 146634 GGCGATAGAGGCCAAGTTACATACGGCAGTCTCGTCCTTGTCGCAATACTGCACAATCTC 146693 |||||| || |||| ||| || || ||| |||||| | | | |||| | ||||| Sbjct 26196 GGCGATGGACGCCAGGTTGCAGACAGCAACCTCGTCAGGGGCAGAGTACTCGATGATCTC 26255 Query 146694 GGCGCAGAGGTTGCTGCACTTGATGATGCCCAAAtttttttGGTTACTAAACTT---GTT 146750 | |||||||||| || |||| |||||| || || ||||| || ||| ||| Sbjct 26256 CGTGCAGAGGTTGGAGCTGCGGATGGTGCCCAGGTTCTTCTGGTTGCT---CTTGCGGTT 26312 Query 146751 GCAGGGGTCCTTGTAGAGCATGTACGGTCCCCCGGTTTCGACATTGGTCTCGACGATGAA 146810 | | |||||||||| |||||| | || ||||| ||| | | ||||| |||| Sbjct 26313 GGCGTGGTCCTTGTACAGCATGAATGGGTTGCCGGTCTCGGTCTGCGCCTCGAGGATG-- 26370 Query 146811 TCTAAACAAATC-TCTG-GCCTTTACTTGTCTT-TCGTACAGTTTATTCTTTTCGTATTT 146867 | | || | | |||| ||||| | ||||| | | | | || || || Sbjct 26371 GCATACCACAGCTTCTGTGCCTTCA-AGGTCTTCTGGCCGCGACCCTCGCGCTCATACTT 26429 Query 146868 CTCGTACAATATTTCAAA--ACTAGAACCGTACTCGTCGAGGAGGCCGGGATACTTTTTG 146925 ||||||||| || || || | ||||| |||| ||||||||| ||| ||| Sbjct 26430 CTCGTACAAGGCCTCGAACTCCTCG--CCGTAGCAGTCGGCCAGGCCGGGACACTCGTTG 26487 Query 146926 GGACAGAACAGCGACCATTCTTTATTCTCCTTCACGCGTTCCATAAACAAATCGGGAATC 146985 || || | || | ||| || |||| || ||| || | ||| || | ||| || ||| Sbjct 26488 GGGCACATAAGGGTCCAGTCGCCGTTCTTCTCCACACGCTTCATGAAGAGATCAGGGATC 26547 Query 146986 CAAAGGCCCAGCATCAAGTCGCGAGCCTTGGCGTCCTCGGAGCCCATGTTGCGTCTCAAG 147045 || ||| |||| | | ||| ||||| | | || || || ||| | || | Sbjct 26548 CAGAGGGCCAGGAAGAGGTCACGAGCACGGACCTCTTCCTTTCCGTGGTTCTTGCGCAGG 26607 Query 147046 TTGAGGACATCGTAAATTTCCGGATGCCAAGGCTCCACGTATGCGGCGAGTGCGCCTTTT 147105 | ||||| ||| | | || | ||||| ||||||| ||| ||| | || || Sbjct 26608 TCGAGGAACTCGAAGACATCAGCGTGCCACGGCTCCAGGTAGATGGCAAAGGCACCGGGG 26667 Query 147106 CGC---TTACCGCCCTGATCGACGTGGCGCACCATGTTATTGAAGACTCGTAACATGG 147160 ||| || || ||||| ||||||| ||| | |||| |||||||| || | ||||| Sbjct 26668 CGCTTGTTGCCACCCTGGTCGACGTAGCGAGCAGTGTTGTTGAAGACACGCAGCATGG 26725 >seq757 Length=325751 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || ||||| || | |||| |||| || | || ||||| || ||||| ||||| ||| Sbjct 30063 GCACCACCACGCAGGCGCAGGACCAGGTGCAGGGTGGACTCCTTCTGAATGTTGTAGTCG 30004 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 || ||||| || || ||||| || ||||| |||||| |||||||| || || Sbjct 30003 GACAGGGTGCGGCCGTCCTCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCTGGG 29944 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063 || ||||||||||||||| |||||| ||||| | |||| |||||| | ||| Sbjct 29943 GGGATGCCCTCCTTGTCCTGGATTTTGGCCTTGACATTGTCGATGGTGTCGGATGACTCC 29884 Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || || | ||| | || ||||| || || || || || || ||||||||| Sbjct 29883 ACCTCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCATG 29833 >seq1543 Length=161075 Score = 109 bits (120), Expect = 5e-19 Identities = 168/236 (71%), Gaps = 3/236 (1%) Strand=Plus/Plus Query 126880 TACTGCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTA 126939 ||||| |||||| || | |||| |||||| || | ||| ||||| || ||||| ||||| Sbjct 71480 TACTG-TCCACCACGCAGACGCAGCACCAAGTGCAGCGTCGACTCCTTCTGAATGTTGTA 71538 Query 126940 ATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATC 126999 || | || || ||| || ||||| || || ||| |||| | |||||||| || Sbjct 71539 GTCTGAGAGTGTCCGGCCATCCTCCAGCTGCTTGCCCGCGAAGATGAGACGCTGCTGGTC 71598 Query 127000 GGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTAC 127058 || || || |||||||||||| || || ||| | |||| || | || |||| | Sbjct 71599 TGGTGGGATACCCTCCTTGTCCTGAATCTTGGCCTTCACGTTG-TCAATTGTATCCGAAG 71657 Query 127059 TCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 |||||| |||| || | || |||||||| || || || || || ||||||||| Sbjct 71658 ACTCGACCTCGAGAGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATG 71713 Score = 98.7 bits (108), Expect = 9e-16 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 |||||||| || || || ||||| ||| | || || || || ||||| |||||| Sbjct 71744 GTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTACGGCCGTCCTCGAGCTGCTTTCCA 71803 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||| | |||||||| || || || || |||||||||||| || || ||| Sbjct 71804 GCAAAGATGAGGCGCTGCTGGTCTGGGGGGATACCCTCCTTGTCCTGAATCTTGGCCTTC 71863 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | |||| |||| |||||| | |||||| |||| ||| | || |||||||| || || Sbjct 71864 ACGTTG-TCGATGGTGTCGGAGGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGCGT 71922 Query 127096 TTTTACAAAAATCTGCAT 127113 || || || |||||||| Sbjct 71923 CTTGACGAAGATCTGCAT 71940 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||| ||| | ||||| || || ||||| || || Sbjct 71972 GTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCG 72031 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| | |||| |||||||| || ||||| ||||||||||||||| || || ||| Sbjct 72032 GCGAAAATCAGGCGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTGAATCTTGGCCTTC 72091 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | |||| |||| |||||| | |||||| || | || | || |||||||| || || Sbjct 72092 ACGTTG-TCGATGGTGTCGGAGGACTCGACCTCAAGAGTGATGGTCTTGCCGGTGAGGGT 72150 Query 127096 TTTTACAAAAATCTGCAT 127113 || || || |||||||| Sbjct 72151 CTTGACGAAGATCTGCAT 72168 >seq1759 Length=81252 Score = 102 bits (112), Expect = 8e-17 Identities = 132/180 (73%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985 || || || ||||| ||| | ||||| ||| || ||||| || || ||| ||||| Sbjct 66847 TTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAGATC 66906 Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTC 127044 ||||||||||| || || || ||||||||||||||| ||| || ||| | |||| || Sbjct 66907 AATCGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTAACGTTG-TC 66965 Query 127045 GACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAA 127104 || |||||| | | ||| || |||| ||| | || ||||| ||||| || || || || Sbjct 66966 GATGGTGTCGGAAGACTCCACCTCGAGGGTGATAGTCTTGCCCGTCAGGGTCTTCACGAA 67025 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475487022364320