Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryphonectria_20radicalis_20[genbank_20GCA_5F002179595.1_202017-06-
08] 2,318 sequences; 41,022,676 total letters
Query= NC_011616.1
Length=148634
Score E
Sequences producing significant alignments: (Bits) Value
seq1933 140 3e-28
seq757 114 1e-20
seq1543 109 5e-19
seq1759 102 8e-17
>seq1933
Length=42650
Score = 140 bits (154), Expect = 3e-28
Identities = 727/1138 (64%), Gaps = 33/1138 (3%)
Strand=Plus/Plus
Query 146041 ACGAGGGCCTTGATGAGATACTGGTTGACCACCTGAAACTCGCCGGCGAGAACGCGCCTC 146100
|| ||| |||||| || | ||||||||||||| ||||| || ||||| || |||| |
Sbjct 25603 ACAAGGTCCTTGAGCAGCCATGGGTTGACCACCTGGAACTCACCAGCGAGCACACGCCGC 25662
Query 146101 AGATACACGTTGCTGGTGAACGGCTCGAACGACTCGTTGTTACCGAGTATCTGCGCCGTC 146160
| || | |||| ||| | ||||| || |||||||||| || || ||||||| |||
Sbjct 25663 TGGTAGATGTTGGACGTGTAGGGCTCAAAGCACTCGTTGTTGCCCAGGATCTGCGAGGTC 25722
Query 146161 GTAGCGGTAGGCATGTACGCCACCAGCAAAGAGTTTCTCACGCCGTG-TCTTTGAATCTT 146219
| || || ||||| ||||| || ||| ||| | ||||| || | ||| |||||
Sbjct 25723 GAGGCAGTGGGCATAGGCGCCATCAACAAGCTGTTGCGGACGCCATGCTGCTTG-ATCTT 25781
Query 146220 TTCCCGTAGTTTGGACCAATTCCACAAATGATCCGTGGGATAGATATTGT---AGTTGTC 146276
|| || | ||| | ||| | | |||| ||| | || |||| | ||||
Sbjct 25782 GGCCTTCAGGGCGTCCCAGTCCCAGA---GGTCCGAGGGCTTGACGTTGTCCCACATGTC 25838
Query 146277 GTAATGCATAGTGCCGCG-GAACAGGGGGCTATTCTCGTACGATTCATAAGGACCGTCGA 146335
||| || | | || | ||| ||| | | ||||||||| || |||||||| |
Sbjct 25839 GTACTGAAGGATACCCTGAGAAACGGGAGAT-CCCTCGTACGACAAGTAGGGACCGTCCA 25897
Query 146336 TCTTGGCCAGTTCGCAGCTAGCTTCCAGAGCCGAAAAGTATATGGTCTCCGCGATCATGT 146395
|||||| | ||||| || || || | ||| |||||||| |||| |
Sbjct 25898 CCTTGGCAATGTCGCACGATGCGGTGAGGGCGGCGTGGTAGATGGTCTCAAAGATCTGCT 25957
Query 146396 AGTTGACGCT-CCTGGCCTCCTCGCTGTCGTAGGGGATATCGAGAAGCACAAAGGCGTCG 146454
||| | ||| | |||||| ||| |||| | |||| || ||||| ||
Sbjct 25958 TGTTCA-GCTGACGGGCCTCAGGCGACTCGAAGGGCAGGCGGAGAGCCAAGAAGGCATCA 26016
Query 146455 GCGAGACCCTGTATCCCGACACCAACGGGGCGGTGTTTCTTGTTACTGTTCGCAGCGCCC 146514
|| |||||||| | || || || | |||||||| | |||| ||||| ||| ||
Sbjct 26017 GCCAGACCCTGAACGCCCACGCCGATAGGGCGGTGGCGCATGTTGCTGTTGCGAGCCTCC 26076
Query 146515 GCAGTGGGATAGTGGTTGCTGTCGATGATCTTGTTGAGATTACGCACGACAATTTTCGTC 146574
||||||| |||| | |||| ||||||||| || || || ||||||| || ||
Sbjct 26077 TGGACAGGATAGTAGTTGATATCGACGATCTTGTTCAGGTTGCGGACGACAACTTGGGTG 26136
Query 146575 AAACGATTCAGCAGGACATAGTCAAATGTTTTAGTT-TTAACGTTGACGCACTTGTTGAC 146633
| | |||||| ||| | | | ||| | | || |||| ||| |
Sbjct 26137 ACTTCGTGCAGCAGCTGGAAGTTGTA-GCAGTCGTTCTCATAGTCGACGAACTGAGGCAG 26195
Query 146634 GGCGATAGAGGCCAAGTTACATACGGCAGTCTCGTCCTTGTCGCAATACTGCACAATCTC 146693
|||||| || |||| ||| || || ||| |||||| | | | |||| | |||||
Sbjct 26196 GGCGATGGACGCCAGGTTGCAGACAGCAACCTCGTCAGGGGCAGAGTACTCGATGATCTC 26255
Query 146694 GGCGCAGAGGTTGCTGCACTTGATGATGCCCAAAtttttttGGTTACTAAACTT---GTT 146750
| |||||||||| || |||| |||||| || || ||||| || ||| |||
Sbjct 26256 CGTGCAGAGGTTGGAGCTGCGGATGGTGCCCAGGTTCTTCTGGTTGCT---CTTGCGGTT 26312
Query 146751 GCAGGGGTCCTTGTAGAGCATGTACGGTCCCCCGGTTTCGACATTGGTCTCGACGATGAA 146810
| | |||||||||| |||||| | || ||||| ||| | | ||||| ||||
Sbjct 26313 GGCGTGGTCCTTGTACAGCATGAATGGGTTGCCGGTCTCGGTCTGCGCCTCGAGGATG-- 26370
Query 146811 TCTAAACAAATC-TCTG-GCCTTTACTTGTCTT-TCGTACAGTTTATTCTTTTCGTATTT 146867
| | || | | |||| ||||| | ||||| | | | | || || ||
Sbjct 26371 GCATACCACAGCTTCTGTGCCTTCA-AGGTCTTCTGGCCGCGACCCTCGCGCTCATACTT 26429
Query 146868 CTCGTACAATATTTCAAA--ACTAGAACCGTACTCGTCGAGGAGGCCGGGATACTTTTTG 146925
||||||||| || || || | ||||| |||| ||||||||| ||| |||
Sbjct 26430 CTCGTACAAGGCCTCGAACTCCTCG--CCGTAGCAGTCGGCCAGGCCGGGACACTCGTTG 26487
Query 146926 GGACAGAACAGCGACCATTCTTTATTCTCCTTCACGCGTTCCATAAACAAATCGGGAATC 146985
|| || | || | ||| || |||| || ||| || | ||| || | ||| || |||
Sbjct 26488 GGGCACATAAGGGTCCAGTCGCCGTTCTTCTCCACACGCTTCATGAAGAGATCAGGGATC 26547
Query 146986 CAAAGGCCCAGCATCAAGTCGCGAGCCTTGGCGTCCTCGGAGCCCATGTTGCGTCTCAAG 147045
|| ||| |||| | | ||| ||||| | | || || || ||| | || |
Sbjct 26548 CAGAGGGCCAGGAAGAGGTCACGAGCACGGACCTCTTCCTTTCCGTGGTTCTTGCGCAGG 26607
Query 147046 TTGAGGACATCGTAAATTTCCGGATGCCAAGGCTCCACGTATGCGGCGAGTGCGCCTTTT 147105
| ||||| ||| | | || | ||||| ||||||| ||| ||| | || ||
Sbjct 26608 TCGAGGAACTCGAAGACATCAGCGTGCCACGGCTCCAGGTAGATGGCAAAGGCACCGGGG 26667
Query 147106 CGC---TTACCGCCCTGATCGACGTGGCGCACCATGTTATTGAAGACTCGTAACATGG 147160
||| || || ||||| ||||||| ||| | |||| |||||||| || | |||||
Sbjct 26668 CGCTTGTTGCCACCCTGGTCGACGTAGCGAGCAGTGTTGTTGAAGACACGCAGCATGG 26725
>seq757
Length=325751
Score = 114 bits (126), Expect = 1e-20
Identities = 164/231 (71%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943
|| ||||| || | |||| |||| || | || ||||| || ||||| ||||| |||
Sbjct 30063 GCACCACCACGCAGGCGCAGGACCAGGTGCAGGGTGGACTCCTTCTGAATGTTGTAGTCG 30004
Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003
|| ||||| || || ||||| || ||||| |||||| |||||||| || ||
Sbjct 30003 GACAGGGTGCGGCCGTCCTCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCTGGG 29944
Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063
|| ||||||||||||||| |||||| ||||| | |||| |||||| | |||
Sbjct 29943 GGGATGCCCTCCTTGTCCTGGATTTTGGCCTTGACATTGTCGATGGTGTCGGATGACTCC 29884
Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114
|| || | ||| | || ||||| || || || || || || |||||||||
Sbjct 29883 ACCTCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCATG 29833
>seq1543
Length=161075
Score = 109 bits (120), Expect = 5e-19
Identities = 168/236 (71%), Gaps = 3/236 (1%)
Strand=Plus/Plus
Query 126880 TACTGCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTA 126939
||||| |||||| || | |||| |||||| || | ||| ||||| || ||||| |||||
Sbjct 71480 TACTG-TCCACCACGCAGACGCAGCACCAAGTGCAGCGTCGACTCCTTCTGAATGTTGTA 71538
Query 126940 ATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATC 126999
|| | || || ||| || ||||| || || ||| |||| | |||||||| ||
Sbjct 71539 GTCTGAGAGTGTCCGGCCATCCTCCAGCTGCTTGCCCGCGAAGATGAGACGCTGCTGGTC 71598
Query 127000 GGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTAC 127058
|| || || |||||||||||| || || ||| | |||| || | || |||| |
Sbjct 71599 TGGTGGGATACCCTCCTTGTCCTGAATCTTGGCCTTCACGTTG-TCAATTGTATCCGAAG 71657
Query 127059 TCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114
|||||| |||| || | || |||||||| || || || || || |||||||||
Sbjct 71658 ACTCGACCTCGAGAGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATG 71713
Score = 98.7 bits (108), Expect = 9e-16
Identities = 142/198 (72%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976
|||||||| || || || ||||| ||| | || || || || ||||| ||||||
Sbjct 71744 GTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTACGGCCGTCCTCGAGCTGCTTTCCA 71803
Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036
|| |||| | |||||||| || || || || |||||||||||| || || |||
Sbjct 71804 GCAAAGATGAGGCGCTGCTGGTCTGGGGGGATACCCTCCTTGTCCTGAATCTTGGCCTTC 71863
Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095
| |||| |||| |||||| | |||||| |||| ||| | || |||||||| || ||
Sbjct 71864 ACGTTG-TCGATGGTGTCGGAGGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGCGT 71922
Query 127096 TTTTACAAAAATCTGCAT 127113
|| || || ||||||||
Sbjct 71923 CTTGACGAAGATCTGCAT 71940
Score = 93.3 bits (102), Expect = 4e-14
Identities = 141/198 (71%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976
|| ||||| || || || ||||| ||| | ||||| || || ||||| || ||
Sbjct 71972 GTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCG 72031
Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036
||| | |||| |||||||| || ||||| ||||||||||||||| || || |||
Sbjct 72032 GCGAAAATCAGGCGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTGAATCTTGGCCTTC 72091
Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095
| |||| |||| |||||| | |||||| || | || | || |||||||| || ||
Sbjct 72092 ACGTTG-TCGATGGTGTCGGAGGACTCGACCTCAAGAGTGATGGTCTTGCCGGTGAGGGT 72150
Query 127096 TTTTACAAAAATCTGCAT 127113
|| || || ||||||||
Sbjct 72151 CTTGACGAAGATCTGCAT 72168
>seq1759
Length=81252
Score = 102 bits (112), Expect = 8e-17
Identities = 132/180 (73%), Gaps = 2/180 (1%)
Strand=Plus/Plus
Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985
|| || || ||||| ||| | ||||| ||| || ||||| || || ||| |||||
Sbjct 66847 TTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAGATC 66906
Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTC 127044
||||||||||| || || || ||||||||||||||| ||| || ||| | |||| ||
Sbjct 66907 AATCGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTAACGTTG-TC 66965
Query 127045 GACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAA 127104
|| |||||| | | ||| || |||| ||| | || ||||| ||||| || || || ||
Sbjct 66966 GATGGTGTCGGAAGACTCCACCTCGAGGGTGATAGTCTTGCCCGTCAGGGTCTTCACGAA 67025
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475487022364320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |