Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryphonectria_20radicalis_20[genbank_20GCA_5F002179595.1_202017-06- 08] 2,318 sequences; 41,022,676 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq1933 259 6e-64 seq1057 95.1 1e-14 seq1567 93.3 5e-14 >seq1933 Length=42650 Score = 259 bits (286), Expect = 6e-64 Identities = 1095/1708 (64%), Gaps = 26/1708 (2%) Strand=Plus/Plus Query 115526 TGAACTGAAT-GGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGC 115584 |||||||||| ||| || ||| |||| | |||||||||||||| || |||||||| Sbjct 25289 TGAACTGAATCGGGGCT-GCCGCCGCCTGGGTGCGGAGGTAGTACATGCCAGTCTTGAGA 25347 Query 115585 CCCTGCTTCCAGGCATACATATGCATTGAGGACAACTTGGAGAGTGTTGGACTTTC---C 115641 ||| ||||||| | | ||||| | | |||| | | || ||| | Sbjct 25348 CCCAGCTTCCATCCGGTGAAGTGCATGCTCGTGATCTTGCCCATAGAAGG---TTCACGC 25404 Query 115642 ATGAAGAGGTTCATACTTTGGGATTGATCGATGAA-GCGTCCCCGATCCGCCGCCATATC 115700 ||| || ||||| || || || |||||||| ||| || || || || ||||| | Sbjct 25405 ATGTGGATGTTCAGGGACTGAGACTGGTCGATGAAAGCG-CCACGGTCGGCGGCCATCTG 25463 Query 115701 AATCACATCCTTCATCTTGATTTCCCACACAGTTCTGTAGAGGTTCTTAATATCATCTGG 115760 | | | || | ||| ||||| || || |||||||| ||| |||||||| || Sbjct 25464 GACGATGGTCCTCTGCGAGATCTCCCAGACGGTCTTGTAGAGGGCCTTGATATCATCCGG 25523 Query 115761 GATATCCACGA-TATTTTGGATAGAGCCACCTGCCTTGACCATGAGATCCTTCATATCCT 115819 ||| | ||| | || |||||||| ||| | | || ||| | | ||||| |||| Sbjct 25524 GATG-CTGCGAATGTTCTGGATAGAACCATCCTCGGCGATGATGCGGTTCTTCAGGTCCT 25582 Query 115820 TTGACCAGAGACCAATCTTCTTGAGATCCTCCACGAGGTGCTTATTGACAACAACAAACT 115879 ||||| |||||| || | || |||| | || ||||| || |||| Sbjct 25583 CGGACCACAGACCACACTGCACAAGGTCCTTGAGCAGCCATGGGTTGACCACCTGGAACT 25642 Query 115880 CACCCGCGAGGGTGCGTCTCAGATAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGT 115939 |||| ||||| || | | | |||||||||| |||||| |||||||||||||| |||| Sbjct 25643 CACCAGCGAGCACACGCCGCTGGTAGATGTTGGACGTGTAGGGCTCAAAGCACTCGTTGT 25702 Query 115940 TACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGA 115999 | |||| ||| || | || ||||| |||||||| || ||||| | | ||||||||||| Sbjct 25703 TGCCCAGGATCTGCGAGGTCGAGGCAGTGGGCATAGGCGCCATCAACAAGCTGTTGCGGA 25762 Query 116000 GACCCACCCCCCTAATGCGTTCCTTGAGGGCGTCCCAGTCGTAGTTGAGCTTTGTCT--- 116056 || | | | || |||| |||||||||||||| || | | | || Sbjct 25763 CGCCATGCTGCTTGATCTTGGCCTTCAGGGCGTCCCAGTCCCAGAGGTCCGAGGGCTTGA 25822 Query 116057 CCCCCTCCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCT 116116 | |||||||| || |||| |||||||| || || | || |||||||| | | | Sbjct 25823 CGTTGTCCCACATGTCGTACTGAAGGATACCCTGAGAAACGGGAGATCCCTCGTACGACA 25882 Query 116117 CATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTG 116176 || || || || |||| || | ||| | || |||||| ||||| || || | Sbjct 25883 AGTAGGGACCGTCCACCTTGGCAATGTCGCACGATGCGGTGAGGGCGGCGTGGTAGATGG 25942 Query 116177 TCTCAAAAATGCGAGCATTCA-TTGCCTTGGCCTCGTCGGAATCAAACGCGAGACGGCAC 116235 ||||||| || | |||| || | |||||| || || || | || ||| Sbjct 25943 TCTCAAAGATCTGCTTGTTCAGCTGAC-GGGCCTCAGGCGACTCGAAGGGCAGGCGGAGA 26001 Query 116236 AAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTA 116295 | || |||| || ||||| || || || | ||| || ||||| || | ||| || Sbjct 26002 GCCAAGAAGGCATCAGCCAGACCCTGAACGCCCACGCCGATAGGGCGGTGGCGCATGTTG 26061 Query 116296 GACTTTCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTG 116355 || ||||| || || ||||| | || |||||| | | | || || || | Sbjct 26062 CTGTTGCGAGCCTCCTGGACAGGATAGTAGTTGATATCGACGATCTTGTTCAGGTTGCGG 26121 Query 116356 GTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTG 116415 |||||| | |||| ||| || ||| | | | | | | | |||| | | | Sbjct 26122 ACGACAACTTGGGTGACTTCGTGCAGCAGCTGGAAGTTGTAGCAGTCGTTCTCATAGTCG 26181 Query 116416 ACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTG 116475 || ||| ||| |||||||| |||||||| || || |||| ||| || ||| | Sbjct 26182 ACGAACTGAGGCAGGGCGATGGACGCCAGGTTGCAGACAGCAACCTCGTCAGGGGCAGAG 26241 Query 116476 TACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTT 116535 ||||| || || ||||| || | || || || |||||||||| |||||| || || Sbjct 26242 TACTCGATGATCTCCGTGCAGAGGTTGGAGCTGCGGATGGTGCCCAGGTTCTTCTGGTTG 26301 Query 116536 GACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGAC 116595 ||| ||| |||||||| ||||| |||| | || ||||| || || | | Sbjct 26302 CTCTTGCGGTTGGCGTGGTCCTTGTACAGCATGAATGGGTTGCCGGTCTCGGTCTGCGCC 26361 Query 116596 TTGAGAATAGCCTTCCATA-CATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTC 116654 | ||| || || | ||| | | || | | || || || | | | || ||||| Sbjct 26362 TCGAGGATGGCATACCACAGCTTCTGTGCCT-TCAAGGTCTTCTGGCCGCGACCCTCGCG 26420 Query 116655 CTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGC-CTCTGAGAGCCCTGGTG 116713 ||| ||||| ||| | |||||| ||||| || || ||| || | || || || Sbjct 26421 CTCATACTTCTCGTACAAGGCCTCGAACTCCTC-GCCGTAGCAGTCGGCCAGGCCGGGAC 26479 Query 116714 CCTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGT 116773 || | || || | || | ||| | || || ||| || |||||||||||||| | Sbjct 26480 ACTCGTTGGGGCACATAAGGGTCCAGTCGCCGTTCTTCTCCACACGCTTCATGAAGAGAT 26539 Query 116774 CTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGA 116833 | ||||||||||| ||| |||||| || ||| || | ||||| | || || || Sbjct 26540 CAGGGATCCAGAGGGCCAGGAAGAGGTCACGAGCACGGACCTCTTCCTTTCCGTGGTTCT 26599 Query 116834 GACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTG 116893 |||| || | || || | || ||| ||||||||||| |||||||| | || | | Sbjct 26600 TGCGCAGGTCGAGGAACTCGAAGACATCAGCGTGCCACGGCTCCAGGTAGATGGCAAAGG 26659 Query 116894 ACCCCTTGCG---ACGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAA 116950 || ||| ||| |||||| || || | || || ||| || || || | Sbjct 26660 CACCGGGGCGCTTGTTGCCACCCTGGTCGACGTAGCGAGCAGTGTTGTTGAAGACACGCA 26719 Query 116951 GCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTGTTGGCTC 117010 |||| || ||||| |||| ||| ||| || || || |||| || |||| | Sbjct 26720 GCATGGGGATGATGCCATTAGACGTGCCGTTGGTGCCGGCAATATAGGAGCCAGTGGCAC 26779 Query 117011 TGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCG 117070 || ||||| | | |||||| || || ||| ||| ||||| || || | Sbjct 26780 GGATGCGGTGGACATTGAGACCAATGCCTCCGGCCATCTTGGAGATCATGGCACAGGTCT 26839 Query 117071 TGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCG 117130 |||| || | ||||| || ||||| || |||| | | | |||||||| | Sbjct 26840 TGAGGGTGTCATAGATACCCTCGATGCTATCCTCCTTCATGTCCACTAGGAAGCACGATG 26899 Query 117131 ACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATAC 117190 ||| |||| | || || || |||||||| || || || | ||||| |||| | || Sbjct 26900 ACAGCTGTGCCTGAGGCGTGCCGGCGTTGAATAGAGTCGGCGAAGCGTGTGTGAAGA-AC 26958 Query 117191 CT-TGGGACATCTTATCGTAGGTCTCCA 117217 | | ||| | | | ||||||||||| Sbjct 26959 TTGTTGGAGAGGTAGTTGTAGGTCTCCA 26986 >seq1057 Length=53502 Score = 95.1 bits (104), Expect = 1e-14 Identities = 178/259 (69%), Gaps = 2/259 (1%) Strand=Plus/Plus Query 12881 GGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACGGGCAACTTCAAAGAT 12940 ||| ||||| ||||||||||| ||||| || || || | ||||| |||||| Sbjct 21602 GGCATCAATCTCGTCAATGAAGACGATGCAGGGCGCGTTCTTCCGGGCCTGCGCAAAGAG 21661 Query 12941 ATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCG-GAAC 12999 || ||||||||| |||||||||||| ||||||||||| || || | || | || || Sbjct 21662 GTCGCGCACTCTCGAGGCACCGACACCGACAAACATCTCGACGAATTCGGAGCCGCTGAC 21721 Query 13000 ATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCG 13059 | | || ||| || ||| || ||||| ||| | || |||||| || ||||| || | Sbjct 21722 ACT-GAAGAACGGCACGCCCGACTCACCGGCGGTCGCCTTGGCGAGCAGCGTCTTACCAG 21780 Query 13060 TCCCTGGTTTCCCCGCGAGAAGGGCACCACGTGGGATCCTGGCACCACTTCCAAAGTAGC 13119 | || || || | | | ||| ||||| || ||| |||| || || | ||| Sbjct 21781 TACCGGGCGGGCCAGACAAGATGGCGCCACGCGGAATCTTGGCGCCGAGTCGCTGGAAGC 21840 Query 13120 GCTCGGGTTGTTTAAGAAA 13138 |||| || || || || || Sbjct 21841 GCTCCGGCTGCTTCAGGAA 21859 >seq1567 Length=91444 Score = 93.3 bits (102), Expect = 5e-14 Identities = 292/448 (65%), Gaps = 16/448 (4%) Strand=Plus/Minus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 |||||| || || ||||||||||||||||| ||||| || | ||| ||| |||||||| Sbjct 45592 GTAGTCACCAACACGCTTCTCGAAGAAGTTGGTCTTGCCGCCAAGGGAGATGTTCTCCAT 45533 Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCAAA-----TTGTTGGCACCCCAATCTGTTTGAGG 127345 || || || ||||| || || | | | |||| || | |||| Sbjct 45532 GAAGTCGAAGGGGTTGGAAGACTTGTAGACCTTCTCGTTG-----CCGAGGGCGACGAGG 45478 Query 127346 AGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGG 127405 ||||| || | |||| |||||||||||| |||| | |||||| |||| ||| Sbjct 45477 AGACGGTCGGCGACGAACTCAATGTACTGCTTCATCAGGGTGGCGTTCATGCCGAGCAGG 45418 Query 127406 TTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATG 127465 ||| || || || || | |||| ||||||||||| | || || ||| | ||| Sbjct 45417 CCACAGGGCAGGGCCTCAGTCAGGAACTCCTTCTCAATGACAACGGCATCCGTGATGATA 45358 Query 127466 GCGTGAATAGTGTCCACCCCAGGTCTATTGCGTAAAGTCTTGAAGAGTTCCA--CAG-CA 127522 || | | | | | || | ||| | | || | ||| || ||| | Sbjct 45357 GCCTCTACGCGCTGCTTGCTGGGCCGGTTGT-TCAGGTG--GGAGAACAGCAGGCAGGCG 45301 Query 127523 AACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGC 127582 || || || |||||||||||||| ||||| || || || |||||| |||||| ||| Sbjct 45300 AAGTCAGTATGTAGACCCTCGTCACGAGAGATCAGCTCGTTGGAGAAGGTCAGACCAGGC 45241 Query 127583 ATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCC 127642 || || || |||||||| | |||||| || | || | ||| ||||||||| ||| Sbjct 45240 ATCAGGCCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCGCCGCTGAAGAAGATACCC 45181 Query 127643 TCCACACACGCGAACGCAAATAGACGCT 127670 || || ||||| || | || |||| Sbjct 45180 TCGACGGCAGCGAATGCGACAAGGCGCT 45153 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613489423628880