Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryphonectria_20radicalis_20[genbank_20GCA_5F002179595.1_202017-06-
08] 2,318 sequences; 41,022,676 total letters
Query= NC_013288.1
Length=191761
Score E
Sequences producing significant alignments: (Bits) Value
seq1933 259 6e-64
seq1057 95.1 1e-14
seq1567 93.3 5e-14
>seq1933
Length=42650
Score = 259 bits (286), Expect = 6e-64
Identities = 1095/1708 (64%), Gaps = 26/1708 (2%)
Strand=Plus/Plus
Query 115526 TGAACTGAAT-GGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGC 115584
|||||||||| ||| || ||| |||| | |||||||||||||| || ||||||||
Sbjct 25289 TGAACTGAATCGGGGCT-GCCGCCGCCTGGGTGCGGAGGTAGTACATGCCAGTCTTGAGA 25347
Query 115585 CCCTGCTTCCAGGCATACATATGCATTGAGGACAACTTGGAGAGTGTTGGACTTTC---C 115641
||| ||||||| | | ||||| | | |||| | | || ||| |
Sbjct 25348 CCCAGCTTCCATCCGGTGAAGTGCATGCTCGTGATCTTGCCCATAGAAGG---TTCACGC 25404
Query 115642 ATGAAGAGGTTCATACTTTGGGATTGATCGATGAA-GCGTCCCCGATCCGCCGCCATATC 115700
||| || ||||| || || || |||||||| ||| || || || || ||||| |
Sbjct 25405 ATGTGGATGTTCAGGGACTGAGACTGGTCGATGAAAGCG-CCACGGTCGGCGGCCATCTG 25463
Query 115701 AATCACATCCTTCATCTTGATTTCCCACACAGTTCTGTAGAGGTTCTTAATATCATCTGG 115760
| | | || | ||| ||||| || || |||||||| ||| |||||||| ||
Sbjct 25464 GACGATGGTCCTCTGCGAGATCTCCCAGACGGTCTTGTAGAGGGCCTTGATATCATCCGG 25523
Query 115761 GATATCCACGA-TATTTTGGATAGAGCCACCTGCCTTGACCATGAGATCCTTCATATCCT 115819
||| | ||| | || |||||||| ||| | | || ||| | | ||||| ||||
Sbjct 25524 GATG-CTGCGAATGTTCTGGATAGAACCATCCTCGGCGATGATGCGGTTCTTCAGGTCCT 25582
Query 115820 TTGACCAGAGACCAATCTTCTTGAGATCCTCCACGAGGTGCTTATTGACAACAACAAACT 115879
||||| |||||| || | || |||| | || ||||| || ||||
Sbjct 25583 CGGACCACAGACCACACTGCACAAGGTCCTTGAGCAGCCATGGGTTGACCACCTGGAACT 25642
Query 115880 CACCCGCGAGGGTGCGTCTCAGATAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGT 115939
|||| ||||| || | | | |||||||||| |||||| |||||||||||||| ||||
Sbjct 25643 CACCAGCGAGCACACGCCGCTGGTAGATGTTGGACGTGTAGGGCTCAAAGCACTCGTTGT 25702
Query 115940 TACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGA 115999
| |||| ||| || | || ||||| |||||||| || ||||| | | |||||||||||
Sbjct 25703 TGCCCAGGATCTGCGAGGTCGAGGCAGTGGGCATAGGCGCCATCAACAAGCTGTTGCGGA 25762
Query 116000 GACCCACCCCCCTAATGCGTTCCTTGAGGGCGTCCCAGTCGTAGTTGAGCTTTGTCT--- 116056
|| | | | || |||| |||||||||||||| || | | | ||
Sbjct 25763 CGCCATGCTGCTTGATCTTGGCCTTCAGGGCGTCCCAGTCCCAGAGGTCCGAGGGCTTGA 25822
Query 116057 CCCCCTCCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCT 116116
| |||||||| || |||| |||||||| || || | || |||||||| | | |
Sbjct 25823 CGTTGTCCCACATGTCGTACTGAAGGATACCCTGAGAAACGGGAGATCCCTCGTACGACA 25882
Query 116117 CATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTG 116176
|| || || || |||| || | ||| | || |||||| ||||| || || |
Sbjct 25883 AGTAGGGACCGTCCACCTTGGCAATGTCGCACGATGCGGTGAGGGCGGCGTGGTAGATGG 25942
Query 116177 TCTCAAAAATGCGAGCATTCA-TTGCCTTGGCCTCGTCGGAATCAAACGCGAGACGGCAC 116235
||||||| || | |||| || | |||||| || || || | || |||
Sbjct 25943 TCTCAAAGATCTGCTTGTTCAGCTGAC-GGGCCTCAGGCGACTCGAAGGGCAGGCGGAGA 26001
Query 116236 AAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTA 116295
| || |||| || ||||| || || || | ||| || ||||| || | ||| ||
Sbjct 26002 GCCAAGAAGGCATCAGCCAGACCCTGAACGCCCACGCCGATAGGGCGGTGGCGCATGTTG 26061
Query 116296 GACTTTCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTG 116355
|| ||||| || || ||||| | || |||||| | | | || || || |
Sbjct 26062 CTGTTGCGAGCCTCCTGGACAGGATAGTAGTTGATATCGACGATCTTGTTCAGGTTGCGG 26121
Query 116356 GTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTG 116415
|||||| | |||| ||| || ||| | | | | | | | |||| | | |
Sbjct 26122 ACGACAACTTGGGTGACTTCGTGCAGCAGCTGGAAGTTGTAGCAGTCGTTCTCATAGTCG 26181
Query 116416 ACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTG 116475
|| ||| ||| |||||||| |||||||| || || |||| ||| || ||| |
Sbjct 26182 ACGAACTGAGGCAGGGCGATGGACGCCAGGTTGCAGACAGCAACCTCGTCAGGGGCAGAG 26241
Query 116476 TACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTT 116535
||||| || || ||||| || | || || || |||||||||| |||||| || ||
Sbjct 26242 TACTCGATGATCTCCGTGCAGAGGTTGGAGCTGCGGATGGTGCCCAGGTTCTTCTGGTTG 26301
Query 116536 GACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGAC 116595
||| ||| |||||||| ||||| |||| | || ||||| || || | |
Sbjct 26302 CTCTTGCGGTTGGCGTGGTCCTTGTACAGCATGAATGGGTTGCCGGTCTCGGTCTGCGCC 26361
Query 116596 TTGAGAATAGCCTTCCATA-CATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTC 116654
| ||| || || | ||| | | || | | || || || | | | || |||||
Sbjct 26362 TCGAGGATGGCATACCACAGCTTCTGTGCCT-TCAAGGTCTTCTGGCCGCGACCCTCGCG 26420
Query 116655 CTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGC-CTCTGAGAGCCCTGGTG 116713
||| ||||| ||| | |||||| ||||| || || ||| || | || || ||
Sbjct 26421 CTCATACTTCTCGTACAAGGCCTCGAACTCCTC-GCCGTAGCAGTCGGCCAGGCCGGGAC 26479
Query 116714 CCTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGT 116773
|| | || || | || | ||| | || || ||| || |||||||||||||| |
Sbjct 26480 ACTCGTTGGGGCACATAAGGGTCCAGTCGCCGTTCTTCTCCACACGCTTCATGAAGAGAT 26539
Query 116774 CTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGA 116833
| ||||||||||| ||| |||||| || ||| || | ||||| | || || ||
Sbjct 26540 CAGGGATCCAGAGGGCCAGGAAGAGGTCACGAGCACGGACCTCTTCCTTTCCGTGGTTCT 26599
Query 116834 GACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTG 116893
|||| || | || || | || ||| ||||||||||| |||||||| | || | |
Sbjct 26600 TGCGCAGGTCGAGGAACTCGAAGACATCAGCGTGCCACGGCTCCAGGTAGATGGCAAAGG 26659
Query 116894 ACCCCTTGCG---ACGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAA 116950
|| ||| ||| |||||| || || | || || ||| || || || |
Sbjct 26660 CACCGGGGCGCTTGTTGCCACCCTGGTCGACGTAGCGAGCAGTGTTGTTGAAGACACGCA 26719
Query 116951 GCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTGTTGGCTC 117010
|||| || ||||| |||| ||| ||| || || || |||| || |||| |
Sbjct 26720 GCATGGGGATGATGCCATTAGACGTGCCGTTGGTGCCGGCAATATAGGAGCCAGTGGCAC 26779
Query 117011 TGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCG 117070
|| ||||| | | |||||| || || ||| ||| ||||| || || |
Sbjct 26780 GGATGCGGTGGACATTGAGACCAATGCCTCCGGCCATCTTGGAGATCATGGCACAGGTCT 26839
Query 117071 TGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCG 117130
|||| || | ||||| || ||||| || |||| | | | |||||||| |
Sbjct 26840 TGAGGGTGTCATAGATACCCTCGATGCTATCCTCCTTCATGTCCACTAGGAAGCACGATG 26899
Query 117131 ACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATAC 117190
||| |||| | || || || |||||||| || || || | ||||| |||| | ||
Sbjct 26900 ACAGCTGTGCCTGAGGCGTGCCGGCGTTGAATAGAGTCGGCGAAGCGTGTGTGAAGA-AC 26958
Query 117191 CT-TGGGACATCTTATCGTAGGTCTCCA 117217
| | ||| | | | |||||||||||
Sbjct 26959 TTGTTGGAGAGGTAGTTGTAGGTCTCCA 26986
>seq1057
Length=53502
Score = 95.1 bits (104), Expect = 1e-14
Identities = 178/259 (69%), Gaps = 2/259 (1%)
Strand=Plus/Plus
Query 12881 GGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACGGGCAACTTCAAAGAT 12940
||| ||||| ||||||||||| ||||| || || || | ||||| ||||||
Sbjct 21602 GGCATCAATCTCGTCAATGAAGACGATGCAGGGCGCGTTCTTCCGGGCCTGCGCAAAGAG 21661
Query 12941 ATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCG-GAAC 12999
|| ||||||||| |||||||||||| ||||||||||| || || | || | || ||
Sbjct 21662 GTCGCGCACTCTCGAGGCACCGACACCGACAAACATCTCGACGAATTCGGAGCCGCTGAC 21721
Query 13000 ATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCG 13059
| | || ||| || ||| || ||||| ||| | || |||||| || ||||| || |
Sbjct 21722 ACT-GAAGAACGGCACGCCCGACTCACCGGCGGTCGCCTTGGCGAGCAGCGTCTTACCAG 21780
Query 13060 TCCCTGGTTTCCCCGCGAGAAGGGCACCACGTGGGATCCTGGCACCACTTCCAAAGTAGC 13119
| || || || | | | ||| ||||| || ||| |||| || || | |||
Sbjct 21781 TACCGGGCGGGCCAGACAAGATGGCGCCACGCGGAATCTTGGCGCCGAGTCGCTGGAAGC 21840
Query 13120 GCTCGGGTTGTTTAAGAAA 13138
|||| || || || || ||
Sbjct 21841 GCTCCGGCTGCTTCAGGAA 21859
>seq1567
Length=91444
Score = 93.3 bits (102), Expect = 5e-14
Identities = 292/448 (65%), Gaps = 16/448 (4%)
Strand=Plus/Minus
Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290
|||||| || || ||||||||||||||||| ||||| || | ||| ||| ||||||||
Sbjct 45592 GTAGTCACCAACACGCTTCTCGAAGAAGTTGGTCTTGCCGCCAAGGGAGATGTTCTCCAT 45533
Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCAAA-----TTGTTGGCACCCCAATCTGTTTGAGG 127345
|| || || ||||| || || | | | |||| || | ||||
Sbjct 45532 GAAGTCGAAGGGGTTGGAAGACTTGTAGACCTTCTCGTTG-----CCGAGGGCGACGAGG 45478
Query 127346 AGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGG 127405
||||| || | |||| |||||||||||| |||| | |||||| |||| |||
Sbjct 45477 AGACGGTCGGCGACGAACTCAATGTACTGCTTCATCAGGGTGGCGTTCATGCCGAGCAGG 45418
Query 127406 TTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATG 127465
||| || || || || | |||| ||||||||||| | || || ||| | |||
Sbjct 45417 CCACAGGGCAGGGCCTCAGTCAGGAACTCCTTCTCAATGACAACGGCATCCGTGATGATA 45358
Query 127466 GCGTGAATAGTGTCCACCCCAGGTCTATTGCGTAAAGTCTTGAAGAGTTCCA--CAG-CA 127522
|| | | | | | || | ||| | | || | ||| || ||| |
Sbjct 45357 GCCTCTACGCGCTGCTTGCTGGGCCGGTTGT-TCAGGTG--GGAGAACAGCAGGCAGGCG 45301
Query 127523 AACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGC 127582
|| || || |||||||||||||| ||||| || || || |||||| |||||| |||
Sbjct 45300 AAGTCAGTATGTAGACCCTCGTCACGAGAGATCAGCTCGTTGGAGAAGGTCAGACCAGGC 45241
Query 127583 ATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCC 127642
|| || || |||||||| | |||||| || | || | ||| ||||||||| |||
Sbjct 45240 ATCAGGCCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCGCCGCTGAAGAAGATACCC 45181
Query 127643 TCCACACACGCGAACGCAAATAGACGCT 127670
|| || ||||| || | || ||||
Sbjct 45180 TCGACGGCAGCGAATGCGACAAGGCGCT 45153
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 613489423628880
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