Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryphonectria_20radicalis_20[genbank_20GCA_5F002179595.1_202017-06- 08] 2,318 sequences; 41,022,676 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq1933 134 2e-26 >seq1933 Length=42650 Score = 134 bits (148), Expect = 2e-26 Identities = 447/683 (65%), Gaps = 13/683 (2%) Strand=Plus/Plus Query 203839 CTTGTCCACCGTGAACTGAAT-GGCGTTCACGGCAGGCCTGCTT-CTCAGATAGTACATG 203896 || ||| || ||||||||||| || | | || | ||||| | | || ||||||||| Sbjct 25278 CTGGTCGACTGTGAACTGAATCGGGGCTGCCGCC--GCCTGGGTGCGGAGGTAGTACATG 25335 Query 203897 CCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTG 203956 || ||||| || ||| || ||| ||| | ||||||| | | |||| || Sbjct 25336 CCAGTCTTGAGACCCAGCTTCCATCCGGTGAAGTGCATGCTCGTGATCTTGCCCATAGAA 25395 Query 203957 GGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGC 204015 || || |||||| |||||||| ||||| |||||||||||| ||||| || || || Sbjct 25396 GGTTCACGCATGTGGATGTTCAGGGACTGAGACTGGTCGATGAAA-GCGCCACGGTCGGC 25454 Query 204016 GGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGGT 204075 |||||| | || |||||| ||||||| |||||||| || |||||| | | | | || | Sbjct 25455 GGCCATCTGGACGATGGTCCTCTGCGAGATCTCCCAGACGGTCTTGTAGAGGGCCTTGAT 25514 Query 204076 GTGTTGAGGCACATCTTCCCACGTCCT-GATCGAGCCGTTGTCGGCCATCAGTCTCATCC 204134 | | || | || | | || || ||| || || | ||||| || | | || Sbjct 25515 ATCATCCGGGA-TGCTGCGAATGTTCTGGATAGAACCATCCTCGGCGATGATGCGGTTCT 25573 Query 204135 TCGTCTCCTCCCCCCACATGCCCAACCTG-ATCAGCTCCCGCACCAGGTGGGGGTTGATG 204193 || ||||| ||||| | ||| ||| | || ||| | ||| ||||||| Sbjct 25574 TCAGGTCCTCGGACCACA-GACCACACTGCACAAGGTCCTTGAGCAGCCATGGGTTGACC 25632 Query 204194 ATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAAC 204253 | ||| || || || | ||||| | || | | | |||| ||| | || || || Sbjct 25633 ACCTGGAACTCACCAGCGAGCACACGCCGCTGGTAGATGTTGGACGTGTAGGGCTCAAAG 25692 Query 204254 GCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGG 204313 |||||||||||| | ||||| | ||| ||| |||||||| || |||| | || | Sbjct 25693 CACTCGTTGTTGCCCAGGATCTGCGAGGTCGAGGCAGTGGGCATAGGCGCCATCAACAAG 25752 Query 204314 GAGTTGCGCACACCGTATTTTTGGACCCTGCGCTTCAGAGAGGTCCAGTCGTGCATCGCA 204373 |||||| || || | | | || | || |||||| | | |||||| | | Sbjct 25753 CTGTTGCGGACGCCATGCTGCTTGATCTTGGCCTTCAGGGCGTCCCAGTCCCAGAGGTCC 25812 Query 204374 CTGGGTTTCAC---GCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGGCTGCCC 204430 ||| || || | ||||||||||| |||||| ||| || ||| || || ||| Sbjct 25813 GAGGGCTTGACGTTGTCCCACATGTCGTACTGAAGGATACCCTGAGAAACGGGAGATCCC 25872 Query 204431 TTGTACGTCGGATAAGGCTGATCCTCTTCTGCCAGCTTGCACGAGGCGGCCATGGCGTGA 204490 | ||||| | || || ||| | | || | | |||||| |||| | |||| Sbjct 25873 TCGTACGACAAGTAGGGACCGTCCACCTTGGCAATGTCGCACGATGCGGTGAGGGCGGCG 25932 Query 204491 TAGTACATGGTCTCAAAGATCTG 204513 | ||| ||||||||||||||||| Sbjct 25933 TGGTAGATGGTCTCAAAGATCTG 25955 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795132160378080