Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryphonectria_20radicalis_20[genbank_20GCA_5F002179595.1_202017-06-
08] 2,318 sequences; 41,022,676 total letters
Query= NC_013756.1
Length=368454
Score E
Sequences producing significant alignments: (Bits) Value
seq1543 129 1e-24
seq757 105 2e-17
seq1759 102 2e-16
>seq1543
Length=161075
Score = 129 bits (142), Expect = 1e-24
Identities = 154/209 (74%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
||||| ||||||||||| |||||||| |||| ||||||||| | | || | || ||
Sbjct 71729 AGGACGAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTACGGCCGTCC 71788
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
|| ||||||||||| || |||||||| ||||||||||| || || || || |||
Sbjct 71789 TCGAGCTGCTTTCCAGCAAAGATGAGGCGCTGCTGGTCTGGGGGGATACCCTCCTTGTCC 71848
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|||||||| ||||||| |||| |||||| | | || || || | ||||| |||
Sbjct 71849 TGAATCTTGGCCTTCACGTTGTCGATGGTGTCGGAGGACTCGACCTCGAGGGTGATGGTC 71908
Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|| || ||||| || || || || || ||
Sbjct 71909 TTGCCGGTGAGCGTCTTGACGAAGATCTG 71937
Score = 120 bits (132), Expect = 7e-22
Identities = 152/209 (73%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
||||| ||||| || || |||||||| |||| ||||||||| | | || | || ||
Sbjct 71957 AGGACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCC 72016
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
|| |||||||| |||||||| || || ||||||||||| ||| || || || |||
Sbjct 72017 TCGAGCTGCTTGCCGGCGAAAATCAGGCGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCC 72076
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|||||||| ||||||| |||| |||||| | | || || || | ||||| |||
Sbjct 72077 TGAATCTTGGCCTTCACGTTGTCGATGGTGTCGGAGGACTCGACCTCAAGAGTGATGGTC 72136
Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|| || ||||| || || || || || ||
Sbjct 72137 TTGCCGGTGAGGGTCTTGACGAAGATCTG 72165
Score = 118 bits (130), Expect = 2e-21
Identities = 157/218 (72%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
|| || | ||| || | ||| || ||||||||||| || | ||||||||| | | |||
Sbjct 71492 CGCAGACGCAGCACCAAGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCTGAGAGTGTC 71551
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
| ||||| ||||||||||| || ||||||||||||||||||||||| || || ||
Sbjct 71552 CGGCCATCCTCCAGCTGCTTGCCCGCGAAGATGAGACGCTGCTGGTCTGGTGGGATACCC 71611
Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588
|| ||||||||||| ||||||| || | || || | | || || || |
Sbjct 71612 TCCTTGTCCTGAATCTTGGCCTTCACGTTGTCAATTGTATCCGAAGACTCGACCTCGAGA 71671
Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||||| ||||| || ||||| || || || || || ||
Sbjct 71672 GTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTG 71709
>seq757
Length=325751
Score = 105 bits (116), Expect = 2e-17
Identities = 154/218 (71%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
|| || | |||||| ||||| || || |||||||| || | ||||||||| | || ||
Sbjct 30054 CGCAGGCGCAGGACCAGGTGCAGGGTGGACTCCTTCTGAATGTTGTAGTCGGACAGGGTG 29995
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
| || || || |||||||| || || ||||| || ||||||||||| || || ||
Sbjct 29994 CGGCCGTCCTCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCTGGGGGGATGCCC 29935
Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588
|| ||||| || || ||| || |||| |||||| | || || || || |
Sbjct 29934 TCCTTGTCCTGGATTTTGGCCTTGACATTGTCGATGGTGTCGGATGACTCCACCTCAAGG 29875
Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||||| ||||| |||||||| || || || || || ||
Sbjct 29874 GTGATAGTCTTGCCCGTGAGGGTCTTGACGAAGATCTG 29837
>seq1759
Length=81252
Score = 102 bits (112), Expect = 2e-16
Identities = 131/181 (72%), Gaps = 0/181 (0%)
Strand=Plus/Plus
Query 199440 CCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGA 199499
|||| |||| ||||||||| | | ||| | ||||| || |||||||| ||||||||||
Sbjct 66845 CCTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAGA 66904
Query 199500 TGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATT 199559
| | ||||||||||| || ||| || || ||||| ||||| ||| ||| |
Sbjct 66905 TCAATCGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTAACGTTGT 66964
Query 199560 CGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAA 199619
||| |||||| | | || || || | ||||| ||||| ||||| || || ||||| |
Sbjct 66965 CGATGGTGTCGGAAGACTCCACCTCGAGGGTGATAGTCTTGCCCGTCAGGGTCTTCACGA 67024
Query 199620 A 199620
|
Sbjct 67025 A 67025
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1178886586765306
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |