Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryphonectria_20radicalis_20[genbank_20GCA_5F002179595.1_202017-06-
08] 2,318 sequences; 41,022,676 total letters
Query= NC_013772.1
Length=176677
Score E
Sequences producing significant alignments: (Bits) Value
seq1543 141 1e-28
seq1759 136 4e-27
seq757 136 4e-27
>seq1543
Length=161075
Score = 141 bits (156), Expect = 1e-28
Identities = 151/197 (77%), Gaps = 2/197 (1%)
Strand=Plus/Plus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| ||||||||||| || ||||| |||| ||||||||||||||||||||
Sbjct 71977 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 72036
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|||| |||||||||||| | || | || |||||||||| ||||| ||| | |||
Sbjct 72037 AATCAGGCGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTGAATCTTGGCCTTCA-CGT 72095
Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580
| | | |||||| || || || || | |||||||| ||||| || || || || |
Sbjct 72096 TGTCGATGGTGTCGGAGGACTCGACCTCAAGAGTGATGGTCTTGCCGGTGAGGGTCTTGA 72155
Query 46581 CAAAGATTTGCATTTTG 46597
| ||||| ||||| |||
Sbjct 72156 CGAAGATCTGCATCTTG 72172
Score = 116 bits (128), Expect = 4e-21
Identities = 143/193 (74%), Gaps = 2/193 (1%)
Strand=Plus/Plus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| ||||||||||| || || || |||| ||||||||||| || || ||
Sbjct 71749 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTACGGCCGTCCTCGAGCTGCTTTCCAGCAAA 71808
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|| | |||||||||||| | || | | |||||||||| ||||| ||| | |||
Sbjct 71809 GATGAGGCGCTGCTGGTCTGGGGGGATACCCTCCTTGTCCTGAATCTTGGCCTTCA-CGT 71867
Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580
| | | |||||| || || || || | |||||||| ||||| || ||||| || |
Sbjct 71868 TGTCGATGGTGTCGGAGGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGCGTCTTGA 71927
Query 46581 CAAAGATTTGCAT 46593
| ||||| |||||
Sbjct 71928 CGAAGATCTGCAT 71940
Score = 96.9 bits (106), Expect = 4e-15
Identities = 153/217 (71%), Gaps = 2/217 (1%)
Strand=Plus/Plus
Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437
||||| ||||| |||| || |||||| || || |||||||| || || || || |
Sbjct 71497 ACGCAGCACCAAGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCTGAGAGTGTCCGGCC 71556
Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497
|| || ||||||||||| ||||| || | ||||||||||| | || | | ||||||
Sbjct 71557 ATCCTCCAGCTGCTTGCCCGCGAAGATGAGACGCTGCTGGTCTGGTGGGATACCCTCCTT 71616
Query 46498 GTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGA 46556
|||| ||||| ||| | ||| | | | || || || || || || | ||||
Sbjct 71617 GTCCTGAATCTTGGCCTTCA-CGTTGTCAATTGTATCCGAAGACTCGACCTCGAGAGTGA 71675
Query 46557 TGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
|||| ||||| || || || || || ||||| |||||
Sbjct 71676 TGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 71712
>seq1759
Length=81252
Score = 136 bits (150), Expect = 4e-27
Identities = 145/189 (77%), Gaps = 2/189 (1%)
Strand=Plus/Plus
Query 46398 TACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGG 46457
|||| |||| ||||| ||||||||||| |||||||| | || || |||||||||||||
Sbjct 66839 TACTGACCTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCATCCTCAAGCTGCTTGCCGG 66898
Query 46458 CGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGA 46517
|||| ||||| ||||||||||| | || | || |||||||||| |||||| ||| |
Sbjct 66899 CGAAGATCAATCGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTT-A 66957
Query 46518 GCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTT 46576
||| | | | |||||| || ||||| || | ||||| || ||||||||||| ||
Sbjct 66958 ACGTTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATAGTCTTGCCCGTCAGGGTC 67017
Query 46577 TTAACAAAG 46585
|| || |||
Sbjct 67018 TTCACGAAG 67026
>seq757
Length=325751
Score = 136 bits (150), Expect = 4e-27
Identities = 159/215 (74%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438
|||| ||||| |||| || |||||| || || ||||||||||| || ||||| ||
Sbjct 30048 CGCAGGACCAGGTGCAGGGTGGACTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCG 29989
Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498
|| |||||||||||||| || || |||| |||||||||||| | || | || |||||||
Sbjct 29988 TCCTCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCTGGGGGGATGCCCTCCTTG 29929
Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558
||| ||| || ||||| | | | |||||| || ||||| || | |||||
Sbjct 29928 TCCTGGATTTTGGCCTTGACATTGTCGATGGTGTCGGATGACTCCACCTCAAGGGTGATA 29869
Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
|| |||||||| || || || || ||||| |||||
Sbjct 29868 GTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 29834
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 565222022217360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |