Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryphonectria_20radicalis_20[genbank_20GCA_5F002179595.1_202017-06-
08] 2,318 sequences; 41,022,676 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq1567 165 8e-36
seq1543 143 3e-29
seq757 131 2e-25
seq1759 118 1e-21
>seq1567
Length=91444
Score = 165 bits (182), Expect = 8e-36
Identities = 333/485 (69%), Gaps = 18/485 (4%)
Strand=Plus/Minus
Query 132625 TTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCGTCATAAAATCCAAGGGGTTG 132684
||||| || || || || || || | | ||| ||| | ||| || || |||||||||
Sbjct 45576 TTCTCGAAGAAGTTGGTCTTGCCGCCAAGGGAGATGTTCTCCATGAAGTCGAAGGGGTTG 45517
Query 132685 GCTGTGTTGTAGTGCTT---GGTGCCGATCAGGTCGACGAGCAGCCTGTCGGCCACGAAC 132741
| | |||||| ||| | |||||| || ||||||| || | |||||| ||||||
Sbjct 45516 GAAGACTTGTAGACCTTCTCGTTGCCGA---GGGCGACGAGGAGACGGTCGGCGACGAAC 45460
Query 132742 TCGATGTATTGCGACAT---GGTTTCGCAATTAAGTCCCAGCAGACGCACCGG-CAGCGC 132797
|| ||||| ||| ||| ||| || || | || ||||| | ||| || ||| ||
Sbjct 45459 TCAATGTACTGCTTCATCAGGGTGGCG---TTCATGCCGAGCAGGC-CACAGGGCAGGGC 45404
Query 132798 TTCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTCCCTAACGCGCGC 132857
|| || || || | ||| ||| | || || || |||| ||| || ||||||
Sbjct 45403 CTCAGTCAGGAACTCCTTCTCAATGACAACGGCATCCGTGATGATAGCCTCTACGCGCTG 45344
Query 132858 CGCGCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCC 132917
| ||| ||||| | || || ||||| || ||| || ||||| ||| | ||
Sbjct 45343 CTTGCTGGGCCGGTTGTTCAGGTGGGAGAACAGCAGGCAGGCGAAGTCAGTATGTAGACC 45284
Query 132918 CTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTT 132977
|||||| | || || || |||||| ||| |||| || ||||| ||||| || || ||
Sbjct 45283 CTCGTCACGAGAGATCAGCTCGTTGGAGAAGGTCAGACCAGGCATCAGGCCACGCTTCTT 45224
Query 132978 GAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGC 133037
|||||| || |||| |||||| ||| ||||||| ||||||||||| ||||| ||
Sbjct 45223 GAGCCAGAAGATGGAGGCGAAGGCGCCGCTGAAGAAGATACCCTCGACGGCAGCGAATGC 45164
Query 133038 CACCAGGCGCTCGCCGAACGTGG-CT-TCTTTGCTGGCGATCCAGCGCAGCGCCCATTCG 133095
|| ||||||| || | |||| || | | ||| |||||| | ||| ||||| |||
Sbjct 45163 GACAAGGCGCTGCGCGTAGGTGGACTCCCGGTCCTG--GATCCACCTCAGAGCCCAGTCG 45106
Query 133096 GCCTT 133100
|||||
Sbjct 45105 GCCTT 45101
Score = 132 bits (146), Expect = 5e-26
Identities = 197/276 (71%), Gaps = 5/276 (2%)
Strand=Plus/Minus
Query 133168 TAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAG 133227
||||||||||| ||| || || | || ||||| | ||||||||| | | || |||
Sbjct 44971 TAGGTGTCGATCAGGAGGGAGTATGTCTCGGAGTGGATGTTCTCCATCATGGTCTGGAAG 44912
Query 133228 CCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGC-GAAACGCTCGACCAGATT 133286
||||| ||||| || ||||| | ||| || || | || ||| ||||||| || ||
Sbjct 44911 CCGTAGAAGCAACGGGCCTCAGGAATCTGAACCTCA-GCGCTGAAGCGCTCGATCAAGTT 44853
Query 133287 TTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCG 133346
|||||||| |||||||| |||||| || ||||| || | ||| |||||| |
Sbjct 44852 CTCGTTGACAATGCCGTCCGAGGCGGCAAAGAAGGCGAGGATGTGGGAGATGAAGTATTT 44793
Query 133347 CTCGTTGTCGTTCAAGCGCTC---CCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTC 133403
||||| | | ||| ||| | ||||||| || |||||||||||| || | ||||||
Sbjct 44792 CTCGTCATTGGTCAGGCGGTTGTTCCAGTCGTGCAGGTCCTTGGACAGATCAATCTCCTC 44733
Query 133404 GACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439
| ||||| || || |||||| || ||||||||
Sbjct 44732 AGCAGTCCAGAAGGATGCCTCGTGCTTCTTGTACAT 44697
>seq1543
Length=161075
Score = 143 bits (158), Expect = 3e-29
Identities = 172/231 (74%), Gaps = 2/231 (1%)
Strand=Plus/Minus
Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300
|| ||||| || ||||| || || ||||| ||||| |||||||| | || |||||| ||
Sbjct 72171 AAGATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACTCTTGAGGTCGAGTCC 72112
Query 38301 ACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359
|||||| | | | |||| | || | || || | ||||| ||||| || || | ||
Sbjct 72111 TCCGACACCATCGACAACG-TGAAGGCCAAGATTCAGGACAAGGAGGGCATCCCTCCTGA 72053
Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419
||| ||||| || |||| ||| ||||| ||||| || |||| ||||||||| ||||||
Sbjct 72052 CCAGCAGCGCCTGATTTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTA 71993
Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470
||||||||| ||||| | || || || |||| || ||| || | |||||
Sbjct 71992 CAACATCCAGAAGGAGTCCACCCTTCACCTGGTCCTCCGTCTGCGTGGCGG 71942
Score = 138 bits (152), Expect = 1e-27
Identities = 169/228 (74%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || || ||||| ||||| |||||||| |||| |||||| | |
Sbjct 71712 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACTCTCGAGGTCGAGTCTTCG 71653
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|| | | | |||| | || | || || | ||||| ||||| || || | |||||
Sbjct 71652 GATACAATTGACAACG-TGAAGGCCAAGATTCAGGACAAGGAGGGTATCCCACCAGACCA 71594
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
||||| ||||| | ||||||||| |||||||| || | || || ||| ||||||||
Sbjct 71593 GCAGCGTCTCATCTTCGCGGGCAAGCAGCTGGAGGATGGCCGGACACTCTCAGACTACAA 71534
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470
||| || ||||| |||||||||| |||||||||||| || | || ||
Sbjct 71533 CATTCAGAAGGAGTCGACGCTGCACTTGGTGCTGCGTCTGCGTGGTGG 71486
Score = 136 bits (150), Expect = 4e-27
Identities = 147/192 (77%), Gaps = 2/192 (1%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || |||||||| ||||| ||||||||| |||| |||||| || ||
Sbjct 71940 ATGCAGATCTTCGTCAAGACGCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCCTCC 71881
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|||| | | | |||| | || | || || | ||||| ||||| || ||| | |||||
Sbjct 71880 GACACCATCGACAACG-TGAAGGCCAAGATTCAGGACAAGGAGGGTATCCCCCCAGACCA 71822
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
||||| ||||| | || || || ||||| || |||| || |||||| |||||||||
Sbjct 71821 GCAGCGCCTCATCTTTGCTGGAAAGCAGCTCGAGGACGGCCGTACCCTCTCCGACTACAA 71762
Query 38423 CATCCAAAAGGA 38434
|||||| |||||
Sbjct 71761 CATCCAGAAGGA 71750
>seq757
Length=325751
Score = 131 bits (144), Expect = 2e-25
Identities = 158/215 (73%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || || ||||||||||| || |||||| | || || ||| | ||
Sbjct 29834 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCATCC 29893
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|||| | | | | | || | ||||||| ||||| ||||| || ||| | |||||
Sbjct 29894 GACACCATCGACAATGTCAAGGCCAAAATCCAGGACAAGGAGGGCATCCCCCCAGACCAG 29953
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
||||| || || | || ||||| ||||| || |||| |||||||| ||||||||||
Sbjct 29954 CAGCGCCTGATCTTTGCTGGCAAGCAGCTCGAGGACGGCCGCACCCTGTCCGACTACAAC 30013
Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458
|| || ||||| | || ||||| |||| |||||
Sbjct 30014 ATTCAGAAGGAGTCCACCCTGCACCTGGTCCTGCG 30048
>seq1759
Length=81252
Score = 118 bits (130), Expect = 1e-21
Identities = 137/182 (75%), Gaps = 2/182 (1%)
Strand=Plus/Minus
Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312
||||| || || || |||||||| || |||||| |||| || ||| | |||||| | |
Sbjct 67025 TTCGTGAAGACCCTGACGGGCAAGACTATCACCCTCGAGGTGGAGTCTTCCGACACCATC 66966
Query 38313 CA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCT 38371
| |||| |||| | || |||| ||||| ||||| |||||| | ||||| ||||| |
Sbjct 66965 GACAACG-TTAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCTGACCAGCAGCGATT 66907
Query 38372 CATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAA 38431
|| | ||| ||||| ||||| || || | ||||| ||| ||||||||||||||| ||
Sbjct 66906 GATCTTCGCCGGCAAGCAGCTTGAGGATGGCCGCACTCTCTCCGACTACAACATCCAGAA 66847
Query 38432 GG 38433
||
Sbjct 66846 GG 66845
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500158307493120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |