Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryphonectria_20radicalis_20[genbank_20GCA_5F002179595.1_202017-06- 08] 2,318 sequences; 41,022,676 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq1567 165 8e-36 seq1543 143 3e-29 seq757 131 2e-25 seq1759 118 1e-21 >seq1567 Length=91444 Score = 165 bits (182), Expect = 8e-36 Identities = 333/485 (69%), Gaps = 18/485 (4%) Strand=Plus/Minus Query 132625 TTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCGTCATAAAATCCAAGGGGTTG 132684 ||||| || || || || || || | | ||| ||| | ||| || || ||||||||| Sbjct 45576 TTCTCGAAGAAGTTGGTCTTGCCGCCAAGGGAGATGTTCTCCATGAAGTCGAAGGGGTTG 45517 Query 132685 GCTGTGTTGTAGTGCTT---GGTGCCGATCAGGTCGACGAGCAGCCTGTCGGCCACGAAC 132741 | | |||||| ||| | |||||| || ||||||| || | |||||| |||||| Sbjct 45516 GAAGACTTGTAGACCTTCTCGTTGCCGA---GGGCGACGAGGAGACGGTCGGCGACGAAC 45460 Query 132742 TCGATGTATTGCGACAT---GGTTTCGCAATTAAGTCCCAGCAGACGCACCGG-CAGCGC 132797 || ||||| ||| ||| ||| || || | || ||||| | ||| || ||| || Sbjct 45459 TCAATGTACTGCTTCATCAGGGTGGCG---TTCATGCCGAGCAGGC-CACAGGGCAGGGC 45404 Query 132798 TTCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTCCCTAACGCGCGC 132857 || || || || | ||| ||| | || || || |||| ||| || |||||| Sbjct 45403 CTCAGTCAGGAACTCCTTCTCAATGACAACGGCATCCGTGATGATAGCCTCTACGCGCTG 45344 Query 132858 CGCGCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCC 132917 | ||| ||||| | || || ||||| || ||| || ||||| ||| | || Sbjct 45343 CTTGCTGGGCCGGTTGTTCAGGTGGGAGAACAGCAGGCAGGCGAAGTCAGTATGTAGACC 45284 Query 132918 CTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTT 132977 |||||| | || || || |||||| ||| |||| || ||||| ||||| || || || Sbjct 45283 CTCGTCACGAGAGATCAGCTCGTTGGAGAAGGTCAGACCAGGCATCAGGCCACGCTTCTT 45224 Query 132978 GAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGC 133037 |||||| || |||| |||||| ||| ||||||| ||||||||||| ||||| || Sbjct 45223 GAGCCAGAAGATGGAGGCGAAGGCGCCGCTGAAGAAGATACCCTCGACGGCAGCGAATGC 45164 Query 133038 CACCAGGCGCTCGCCGAACGTGG-CT-TCTTTGCTGGCGATCCAGCGCAGCGCCCATTCG 133095 || ||||||| || | |||| || | | ||| |||||| | ||| ||||| ||| Sbjct 45163 GACAAGGCGCTGCGCGTAGGTGGACTCCCGGTCCTG--GATCCACCTCAGAGCCCAGTCG 45106 Query 133096 GCCTT 133100 ||||| Sbjct 45105 GCCTT 45101 Score = 132 bits (146), Expect = 5e-26 Identities = 197/276 (71%), Gaps = 5/276 (2%) Strand=Plus/Minus Query 133168 TAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAG 133227 ||||||||||| ||| || || | || ||||| | ||||||||| | | || ||| Sbjct 44971 TAGGTGTCGATCAGGAGGGAGTATGTCTCGGAGTGGATGTTCTCCATCATGGTCTGGAAG 44912 Query 133228 CCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGC-GAAACGCTCGACCAGATT 133286 ||||| ||||| || ||||| | ||| || || | || ||| ||||||| || || Sbjct 44911 CCGTAGAAGCAACGGGCCTCAGGAATCTGAACCTCA-GCGCTGAAGCGCTCGATCAAGTT 44853 Query 133287 TTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCG 133346 |||||||| |||||||| |||||| || ||||| || | ||| |||||| | Sbjct 44852 CTCGTTGACAATGCCGTCCGAGGCGGCAAAGAAGGCGAGGATGTGGGAGATGAAGTATTT 44793 Query 133347 CTCGTTGTCGTTCAAGCGCTC---CCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTC 133403 ||||| | | ||| ||| | ||||||| || |||||||||||| || | |||||| Sbjct 44792 CTCGTCATTGGTCAGGCGGTTGTTCCAGTCGTGCAGGTCCTTGGACAGATCAATCTCCTC 44733 Query 133404 GACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439 | ||||| || || |||||| || |||||||| Sbjct 44732 AGCAGTCCAGAAGGATGCCTCGTGCTTCTTGTACAT 44697 >seq1543 Length=161075 Score = 143 bits (158), Expect = 3e-29 Identities = 172/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || ||||| || || ||||| ||||| |||||||| | || |||||| || Sbjct 72171 AAGATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACTCTTGAGGTCGAGTCC 72112 Query 38301 ACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 |||||| | | | |||| | || | || || | ||||| ||||| || || | || Sbjct 72111 TCCGACACCATCGACAACG-TGAAGGCCAAGATTCAGGACAAGGAGGGCATCCCTCCTGA 72053 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||| ||||| || |||| ||| ||||| ||||| || |||| ||||||||| |||||| Sbjct 72052 CCAGCAGCGCCTGATTTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTA 71993 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||||| ||||| | || || || |||| || ||| || | ||||| Sbjct 71992 CAACATCCAGAAGGAGTCCACCCTTCACCTGGTCCTCCGTCTGCGTGGCGG 71942 Score = 138 bits (152), Expect = 1e-27 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||| ||||| |||||||| |||| |||||| | | Sbjct 71712 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACTCTCGAGGTCGAGTCTTCG 71653 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | |||| | || | || || | ||||| ||||| || || | ||||| Sbjct 71652 GATACAATTGACAACG-TGAAGGCCAAGATTCAGGACAAGGAGGGTATCCCACCAGACCA 71594 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| ||||| | ||||||||| |||||||| || | || || ||| |||||||| Sbjct 71593 GCAGCGTCTCATCTTCGCGGGCAAGCAGCTGGAGGATGGCCGGACACTCTCAGACTACAA 71534 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||| || ||||| |||||||||| |||||||||||| || | || || Sbjct 71533 CATTCAGAAGGAGTCGACGCTGCACTTGGTGCTGCGTCTGCGTGGTGG 71486 Score = 136 bits (150), Expect = 4e-27 Identities = 147/192 (77%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || |||||||| ||||| ||||||||| |||| |||||| || || Sbjct 71940 ATGCAGATCTTCGTCAAGACGCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCCTCC 71881 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || || | ||||| ||||| || ||| | ||||| Sbjct 71880 GACACCATCGACAACG-TGAAGGCCAAGATTCAGGACAAGGAGGGTATCCCCCCAGACCA 71822 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| ||||| | || || || ||||| || |||| || |||||| ||||||||| Sbjct 71821 GCAGCGCCTCATCTTTGCTGGAAAGCAGCTCGAGGACGGCCGTACCCTCTCCGACTACAA 71762 Query 38423 CATCCAAAAGGA 38434 |||||| ||||| Sbjct 71761 CATCCAGAAGGA 71750 >seq757 Length=325751 Score = 131 bits (144), Expect = 2e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||||||||| || |||||| | || || ||| | || Sbjct 29834 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCATCC 29893 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | ||||||| ||||| ||||| || ||| | ||||| Sbjct 29894 GACACCATCGACAATGTCAAGGCCAAAATCCAGGACAAGGAGGGCATCCCCCCAGACCAG 29953 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || || | || ||||| ||||| || |||| |||||||| |||||||||| Sbjct 29954 CAGCGCCTGATCTTTGCTGGCAAGCAGCTCGAGGACGGCCGCACCCTGTCCGACTACAAC 30013 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 || || ||||| | || ||||| |||| ||||| Sbjct 30014 ATTCAGAAGGAGTCCACCCTGCACCTGGTCCTGCG 30048 >seq1759 Length=81252 Score = 118 bits (130), Expect = 1e-21 Identities = 137/182 (75%), Gaps = 2/182 (1%) Strand=Plus/Minus Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312 ||||| || || || |||||||| || |||||| |||| || ||| | |||||| | | Sbjct 67025 TTCGTGAAGACCCTGACGGGCAAGACTATCACCCTCGAGGTGGAGTCTTCCGACACCATC 66966 Query 38313 CA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCT 38371 | |||| |||| | || |||| ||||| ||||| |||||| | ||||| ||||| | Sbjct 66965 GACAACG-TTAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCTGACCAGCAGCGATT 66907 Query 38372 CATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAA 38431 || | ||| ||||| ||||| || || | ||||| ||| ||||||||||||||| || Sbjct 66906 GATCTTCGCCGGCAAGCAGCTTGAGGATGGCCGCACTCTCTCCGACTACAACATCCAGAA 66847 Query 38432 GG 38433 || Sbjct 66846 GG 66845 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500158307493120