Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryphonectria_20radicalis_20[genbank_20GCA_5F002179595.1_202017-06-
08] 2,318 sequences; 41,022,676 total letters
Query= NC_014765.1
Length=198519
Score E
Sequences producing significant alignments: (Bits) Value
seq2035 230 3e-55
seq1653 136 5e-27
seq2031 134 2e-26
>seq2035
Length=18481
Score = 230 bits (254), Expect = 3e-55
Identities = 425/621 (68%), Gaps = 8/621 (1%)
Strand=Plus/Plus
Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516
||||| || |||||||||| ||| || || || || || | ||||| || ||||||||
Sbjct 14114 TCGAAGTCCTCACCACCCAGGTGAGTGTCACCAGCAGTAGACTTGACCTCGAAGATACCC 14173
Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576
| || ||| | | || || ||||| || |||||||| |||||||| || ||||| |||
Sbjct 14174 TCCTCGATGGTGAGCAGGGAGACATCGAAGGTACCACCGCCCAGGTCGAAGATGAGCACG 14233
Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636
|| ||| | || ||||| || |||||||| ||||| || || || || || ||
Sbjct 14234 TTGCGCTCGCCCTCGACCTTCTTGTCAAGACCGTAGGCGATGGCAGCAGCGGTGGGCTCG 14293
Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696
|| || ||||| ||| ||||||||| ||||| | ||||| || || || || ||
Sbjct 14294 TTGATGATACGCAGAACGTTCAGGCCGGCAATGAGACCAGCATCCTTGGTGGCCTGGCGC 14353
Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGA 7756
|| || || || |||||||| ||||| || ||||| |||| |||| | || ||
Sbjct 14354 TGAGAGTCATTGAAGTAGGCAGGGACAGTCACGACAGCGTTGTTGACGGTGCCGCCCAGG 14413
Query 7757 TACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCA 7816
|| | || || | || ||| ||||| || ||||| || || ||||| || | |
Sbjct 14414 TAGGCCTCAGCAGTCTCGCGCATCTTGGTGAGGACCATGGAGGAGATCTCCTCGGGAGTG 14473
Query 7817 AACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTA-TCCGCAGCACCGGG 7875
|| || || || || || || || ||||| || || | ||| || | | | | |
Sbjct 14474 AAGTGCTTGGTCTCGCCCTTGAACTCAACCTCGATGACGGGCTTGCTGCCCTTCTC---- 14529
Query 7876 GATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCT 7935
||| ||||| | | | | ||||| ||| | ||||||| |||| ||||| |
Sbjct 14530 GATGACCTTGAAGGGGAAGTGCTTCATGTCGGCCTGGACCTCAGAGTCCTGGAACTTGCG 14589
Query 7936 TCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTT 7995
|| || | ||||| || || || || ||||| | |||||||||||| ||||||||
Sbjct 14590 ACCAATCAACCGCTTCGCGTCGAAGACGGTGTTGTGGGGGTTCATGGCGACCTGGTTCTT 14649
Query 7996 CGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGT 8055
|| || || || || ||||| || || || || || || || | |||||||| ||
Sbjct 14650 GGCGGCATCACCAATGAGACGCTCTGTA---TCGGTGAAAGCAACAAATGATGGGGTGGT 14706
Query 8056 TCGATTCCCTTGGTCGTTCGC 8076
|| || || ||||| || ||
Sbjct 14707 ACGGTTGCCCTGGTCATTGGC 14727
>seq1653
Length=80143
Score = 136 bits (150), Expect = 5e-27
Identities = 242/353 (69%), Gaps = 0/353 (0%)
Strand=Plus/Minus
Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516
|||||||| |||||||| | ||| ||||| || || || || ||| || || | |||
Sbjct 53383 TCGAAATCCTCACCACCGAGGTGGGTATCACCGGCAGTAGCCAGGACCTCGAAAACACCC 53324
Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576
|| || | | || ||||| || ||||||||||| || || | | || |
Sbjct 53323 TGGTCGATCGACAGGAGAGAGACATCGAAAGTACCACCACCAAGATCGTAGACGATGATC 53264
Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636
| || |||| | | |||| || |||||||||||||| || || ||||| || ||
Sbjct 53263 TGACGCTCACCGTCGTCGGTCTTGTCCAGACCGTACGCGATGGCGGCGGCCGTGGGCTCG 53204
Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696
|| | ||||| || ||| || || || ||| | | ||||| || || || || ||
Sbjct 53203 TTGACGATACGGAGGACGTTGAGACCGGCGATAATGCCGGCATCCTTGGTAGCCTGACGC 53144
Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGA 7756
|| ||||| |||||||| ||||| || ||||| |||| ||||| ||||| |||||
Sbjct 53143 TGGTTGTCGTTGAAGTAGGCGGGGACAGTGACGACGGCGTGGGTGACCTTCTTTCCGAGG 53084
Query 7757 TACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTC 7809
|| | || |||| || ||||| ||| |||| ||| | || ||||| ||
Sbjct 53083 TAGGTCTCGGCGACCTCCTTCATCTTGCCCAGAATCATGGCCGAGATCTCCTC 53031
>seq2031
Length=292583
Score = 134 bits (148), Expect = 2e-26
Identities = 359/544 (66%), Gaps = 11/544 (2%)
Strand=Plus/Plus
Query 7243 CAGTTCCTCAAAACGTGCACGGGTAAT--GGATGTATAGAAATCAACGCCGTCGTATAAC 7300
||| ||||| ||||| |||||||| || | |||| |||||| |||||||| | |
Sbjct 104124 CAGGTCCTCGAAACGGGCACGGGTGATCTGCATGTT--GAAATCCTCGCCGTCGAAGAGG 104181
Query 7301 GAATCAATTTCAATGGTTGTTTGTGC--CGTCGAAGATAACGTTCGCTTTGCGCGCTCAC 7358
|| || || |||||||| | || || || | || | || ||||| || ||||| |
Sbjct 104182 GAGTCGATCTCAATGGTGGCCTGGGCACCGCTG--GACAGGGTACGCTTGGCACGCTCGC 104239
Query 7359 ACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTAC 7418
| || || || | |||||| |||||||| | | ||||| | || ||||| || |
Sbjct 104240 AAGCAGTGCGGAGACGACGGAGGGCACGGGCATCGCCGGACAGGTCCTTCTTGAACTTGC 104299
Query 7419 GTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGT 7478
| | ||||| | | |||| || || | | ||||| || | ||||||| ||
Sbjct 104300 GGGTGAACTCCTTCTTGCAGTGGTCCAGCAGGTTGGTGTCGAAGTCCTGTCCACCCAGGT 104359
Query 7479 GTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAA 7538
| || || || || || || ||||| |||| || || | ||||| | || || |
Sbjct 104360 GGGTGTCACCGGCAGTAGCCTTGACGGTGAAGACGCCACCCTGGATGTTAAGCAGGGAGA 104419
Query 7539 CATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTT---CGTATCGTCGTCTTTGT 7595
|||| || || ||||||||||| || | || || ||||| | | || | ||||
Sbjct 104420 CATCGAAGGTGCCACCACCCAGATCGTAGATCAGGACGTTGCGCTCCTTGTTGGACTTGT 104479
Query 7596 TCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGT 7655
| | || ||||| || || || || || || || || || || ||||| || ||
Sbjct 104480 TGGAGCCAAGGCCGTAGGCAATGGCAGCAGCGGTGGGCTCGTTGATGATACGGAGGACGT 104539
Query 7656 TCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGG 7715
| || || | || | | | ||||| || || || || || || ||||| |||||||
Sbjct 104540 TAAGACCGGAGATGGATCCGGCATCCTTGGTGGCCTGACGCTGGTTGTCGTTGAAGTAGG 104599
Query 7716 CCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTT 7775
| ||||| || | ||| || | | ||| ||||| || || | | || || || || |
Sbjct 104600 CGGGGACAGTGATGACGGCCTTCTCGACCTTCTTGCCAAGCTTGGTCTCGGCAATCTCCT 104659
Query 7776 TCAT 7779
||||
Sbjct 104660 TCAT 104663
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 635114397027120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |