Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryphonectria_20radicalis_20[genbank_20GCA_5F002179595.1_202017-06- 08] 2,318 sequences; 41,022,676 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq2035 230 3e-55 seq1653 136 5e-27 seq2031 134 2e-26 >seq2035 Length=18481 Score = 230 bits (254), Expect = 3e-55 Identities = 425/621 (68%), Gaps = 8/621 (1%) Strand=Plus/Plus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||| || |||||||||| ||| || || || || || | ||||| || |||||||| Sbjct 14114 TCGAAGTCCTCACCACCCAGGTGAGTGTCACCAGCAGTAGACTTGACCTCGAAGATACCC 14173 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 | || ||| | | || || ||||| || |||||||| |||||||| || ||||| ||| Sbjct 14174 TCCTCGATGGTGAGCAGGGAGACATCGAAGGTACCACCGCCCAGGTCGAAGATGAGCACG 14233 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 || ||| | || ||||| || |||||||| ||||| || || || || || || Sbjct 14234 TTGCGCTCGCCCTCGACCTTCTTGTCAAGACCGTAGGCGATGGCAGCAGCGGTGGGCTCG 14293 Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696 || || ||||| ||| ||||||||| ||||| | ||||| || || || || || Sbjct 14294 TTGATGATACGCAGAACGTTCAGGCCGGCAATGAGACCAGCATCCTTGGTGGCCTGGCGC 14353 Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGA 7756 || || || || |||||||| ||||| || ||||| |||| |||| | || || Sbjct 14354 TGAGAGTCATTGAAGTAGGCAGGGACAGTCACGACAGCGTTGTTGACGGTGCCGCCCAGG 14413 Query 7757 TACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCA 7816 || | || || | || ||| ||||| || ||||| || || ||||| || | | Sbjct 14414 TAGGCCTCAGCAGTCTCGCGCATCTTGGTGAGGACCATGGAGGAGATCTCCTCGGGAGTG 14473 Query 7817 AACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTA-TCCGCAGCACCGGG 7875 || || || || || || || || ||||| || || | ||| || | | | | | Sbjct 14474 AAGTGCTTGGTCTCGCCCTTGAACTCAACCTCGATGACGGGCTTGCTGCCCTTCTC---- 14529 Query 7876 GATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCT 7935 ||| ||||| | | | | ||||| ||| | ||||||| |||| ||||| | Sbjct 14530 GATGACCTTGAAGGGGAAGTGCTTCATGTCGGCCTGGACCTCAGAGTCCTGGAACTTGCG 14589 Query 7936 TCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTT 7995 || || | ||||| || || || || ||||| | |||||||||||| |||||||| Sbjct 14590 ACCAATCAACCGCTTCGCGTCGAAGACGGTGTTGTGGGGGTTCATGGCGACCTGGTTCTT 14649 Query 7996 CGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGT 8055 || || || || || ||||| || || || || || || || | |||||||| || Sbjct 14650 GGCGGCATCACCAATGAGACGCTCTGTA---TCGGTGAAAGCAACAAATGATGGGGTGGT 14706 Query 8056 TCGATTCCCTTGGTCGTTCGC 8076 || || || ||||| || || Sbjct 14707 ACGGTTGCCCTGGTCATTGGC 14727 >seq1653 Length=80143 Score = 136 bits (150), Expect = 5e-27 Identities = 242/353 (69%), Gaps = 0/353 (0%) Strand=Plus/Minus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 |||||||| |||||||| | ||| ||||| || || || || ||| || || | ||| Sbjct 53383 TCGAAATCCTCACCACCGAGGTGGGTATCACCGGCAGTAGCCAGGACCTCGAAAACACCC 53324 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 || || | | || ||||| || ||||||||||| || || | | || | Sbjct 53323 TGGTCGATCGACAGGAGAGAGACATCGAAAGTACCACCACCAAGATCGTAGACGATGATC 53264 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 | || |||| | | |||| || |||||||||||||| || || ||||| || || Sbjct 53263 TGACGCTCACCGTCGTCGGTCTTGTCCAGACCGTACGCGATGGCGGCGGCCGTGGGCTCG 53204 Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696 || | ||||| || ||| || || || ||| | | ||||| || || || || || Sbjct 53203 TTGACGATACGGAGGACGTTGAGACCGGCGATAATGCCGGCATCCTTGGTAGCCTGACGC 53144 Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGA 7756 || ||||| |||||||| ||||| || ||||| |||| ||||| ||||| ||||| Sbjct 53143 TGGTTGTCGTTGAAGTAGGCGGGGACAGTGACGACGGCGTGGGTGACCTTCTTTCCGAGG 53084 Query 7757 TACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTC 7809 || | || |||| || ||||| ||| |||| ||| | || ||||| || Sbjct 53083 TAGGTCTCGGCGACCTCCTTCATCTTGCCCAGAATCATGGCCGAGATCTCCTC 53031 >seq2031 Length=292583 Score = 134 bits (148), Expect = 2e-26 Identities = 359/544 (66%), Gaps = 11/544 (2%) Strand=Plus/Plus Query 7243 CAGTTCCTCAAAACGTGCACGGGTAAT--GGATGTATAGAAATCAACGCCGTCGTATAAC 7300 ||| ||||| ||||| |||||||| || | |||| |||||| |||||||| | | Sbjct 104124 CAGGTCCTCGAAACGGGCACGGGTGATCTGCATGTT--GAAATCCTCGCCGTCGAAGAGG 104181 Query 7301 GAATCAATTTCAATGGTTGTTTGTGC--CGTCGAAGATAACGTTCGCTTTGCGCGCTCAC 7358 || || || |||||||| | || || || | || | || ||||| || ||||| | Sbjct 104182 GAGTCGATCTCAATGGTGGCCTGGGCACCGCTG--GACAGGGTACGCTTGGCACGCTCGC 104239 Query 7359 ACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTAC 7418 | || || || | |||||| |||||||| | | ||||| | || ||||| || | Sbjct 104240 AAGCAGTGCGGAGACGACGGAGGGCACGGGCATCGCCGGACAGGTCCTTCTTGAACTTGC 104299 Query 7419 GTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGT 7478 | | ||||| | | |||| || || | | ||||| || | ||||||| || Sbjct 104300 GGGTGAACTCCTTCTTGCAGTGGTCCAGCAGGTTGGTGTCGAAGTCCTGTCCACCCAGGT 104359 Query 7479 GTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAA 7538 | || || || || || || ||||| |||| || || | ||||| | || || | Sbjct 104360 GGGTGTCACCGGCAGTAGCCTTGACGGTGAAGACGCCACCCTGGATGTTAAGCAGGGAGA 104419 Query 7539 CATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTT---CGTATCGTCGTCTTTGT 7595 |||| || || ||||||||||| || | || || ||||| | | || | |||| Sbjct 104420 CATCGAAGGTGCCACCACCCAGATCGTAGATCAGGACGTTGCGCTCCTTGTTGGACTTGT 104479 Query 7596 TCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGT 7655 | | || ||||| || || || || || || || || || || ||||| || || Sbjct 104480 TGGAGCCAAGGCCGTAGGCAATGGCAGCAGCGGTGGGCTCGTTGATGATACGGAGGACGT 104539 Query 7656 TCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGG 7715 | || || | || | | | ||||| || || || || || || ||||| ||||||| Sbjct 104540 TAAGACCGGAGATGGATCCGGCATCCTTGGTGGCCTGACGCTGGTTGTCGTTGAAGTAGG 104599 Query 7716 CCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTT 7775 | ||||| || | ||| || | | ||| ||||| || || | | || || || || | Sbjct 104600 CGGGGACAGTGATGACGGCCTTCTCGACCTTCTTGCCAAGCTTGGTCTCGGCAATCTCCT 104659 Query 7776 TCAT 7779 |||| Sbjct 104660 TCAT 104663 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635114397027120