Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryphonectria_20radicalis_20[genbank_20GCA_5F002179595.1_202017-06- 08] 2,318 sequences; 41,022,676 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq1933 205 1e-47 seq1567 111 2e-19 seq1057 100 4e-16 >seq1933 Length=42650 Score = 205 bits (226), Expect = 1e-47 Identities = 939/1466 (64%), Gaps = 40/1466 (3%) Strand=Plus/Minus Query 111922 ATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAACCAAGCTG 111981 |||| || || || ||||| || || || ||| ||| || ||||| || |||| | || Sbjct 26737 ATGGCATCATCCCCATGCTGCGTGTCTTCAACAACACTGCTCGCTACGTCGACCAGGGTG 26678 Query 111982 G------GCGTCGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACGCGGATATCA 112035 | ||| | | || | | || |||| || ||||| |||||||| ||| || Sbjct 26677 GCAACAAGCGCCCC---GGTGCCTTTGCCATCTACCTGGAGCCGTGGCACGCTGATGTCT 26621 Query 112036 TGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGTGC-CGCGATCTC 112094 | |||||||| || |||| ||||| || | || |||| || ||| || || ||| Sbjct 26620 TCGAGTTCCTCGACCTGCGCAAGAACCACGGAAAGGAAGAGGTCCG-TGCTCGTGACCTC 26562 Query 112095 TTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAATTGG 112154 ||| || |||||||| || ||||||||||||||| | || ||| ||| ||| | ||| Sbjct 26561 TTCCTGGCCCTCTGGATCCCTGATCTCTTCATGAAGCGTGTGGAGAAGAACGGCGACTGG 26502 Query 112155 TCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTGGGTGAGGAGTTTGAA 112214 | || | || || || || ||||| || |||| | || |||||||| || Sbjct 26501 ACCCTTATGTGCCCCAACGAGTGTCCCGGCCTGGCCGACTGCTACGGCGAGGAGTTCGAG 26442 Query 112215 GCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGC-GACGGTGCCAGCTGCCGA 112273 ||| | ||| ||||| ||| || |||| | | | | ||| || || | || Sbjct 26441 GCCTTGTACGAGAAGTATGAGCGCGAGGGTCGCG-GCCAGAAGACCTTGAAGGCA-CAGA 26384 Query 112274 TG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATATATGCTTTACA 112332 | ||||| | || || ||| || | || |||||||| || | |||| ||||| |||| Sbjct 26383 AGCTGTGGTATGCCATCCTCGAGGCGCAGACCGAGACCGGCAACCCATTCATGCTGTACA 26324 Query 112333 AAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAACC 112392 | ||| | |||| ||||| || || ||||| |||| ||| || ||||||| Sbjct 26323 AGGACCACGCCAACCGCAAGAGCAACCAGAAGAACCTGGGCACCATCCGCAGCTCCAACC 26264 Query 112393 TCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCAT 112452 |||| || || ||| | || | | | | || ||| ||||| || ||||| || | Sbjct 26263 TCTGCACGGAGATCATCGAGTACTCTGCCCCTGACGAGGTTGCTGTCTGCAACCTGGCGT 26204 Query 112453 CAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTG--ATTATGAAAAACT 112510 | ||||| || || ||| || || |||| | ||| | | | | || Sbjct 26203 CCATCGCCCTGCCTCAGTTCGTCGACTATGAGA--ACGACTGCTACAACTTCCAGCTGCT 26146 Query 112511 CCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATTGATAGAAATTTTTA 112570 |||||||| || || |||| ||||| |||| | | |||| || | || Sbjct 26145 GCACGAAGTCACCCAAGTTGTCGTCCGCAACCTGAACAAGATCGTCGATATCAACTACTA 26086 Query 112571 CCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTCCA 112630 || || || ||||| || || ||| | ||||| || || || | || || || Sbjct 26085 TCCTGTCCAGGAGGCTCGCAACAGCAACATGCGCCACCGCCCTATCGGCGTGGGCGTTCA 26026 Query 112631 AGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGATTCCGACGAAGCGAAGGA 112690 ||||| || |||| ||| | | |||| | || || || || || | Sbjct 26025 GGGTCTGGCTGATGCCTTCTTGGCTCTCCGCCTGCCCTTCGAGTCGCCTGAGGCCCGTCA 25966 Query 112691 AATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTCTTGAGGCGA-GTTCGGAGT 112749 | || || || |||||||| || || |||||||| || || || || | Sbjct 25965 GCTGAACAAGCAGATCTTTGAGACCATCTACCACGCCGCCCTCACCGCATCGTGCGACAT 25906 Query 112750 TGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCACAAGGGGTGC 112809 || || |||| || ||||| || | | ||||| ||||| | ||| || || | | Sbjct 25905 TGCCA-AGGTGGACGGTCCCTACTTGTCGTACGAGGGATCTCCCGTTTCTCAGGGTATCC 25847 Query 112810 TTCAATTTGATATGTGGGA--AGGTGA-GACCAAGCTTCACTACGACTGGGACGCTCTCA 112866 |||| | || |||||||| | || | | || | | || ||||||||||| || | Sbjct 25846 TTCAGTACGACATGTGGGACAACGTCAAGCCCTCGGACCTCTGGGACTGGGACGCCCTGA 25787 Query 112867 AGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCACCAATGCCAACAG 112926 ||| |||||| || | || | || ||||| | |||||||| || ||||| || | Sbjct 25786 AGGCCAAGATCAAGCAGCATGGCGTCCGCAACAGCTTGTTGATGGCGCCTATGCCCACTG 25727 Query 112927 CCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACACGACGAACATCT 112986 |||| ||| | || ||| |||| || || || |||||||| ||||||||| | ||||||| Sbjct 25726 CCTCGACCTCGCAGATCCTGGGCAACAACGAGTGCTTTGAGCCCTACACGTCCAACATCT 25667 Query 112987 ATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGCAT--CTCGTGGATGA 113044 | | | | | ||||| || ||||| | | |||||| ||| || | | || Sbjct 25666 ACCAGCGGCGTGTGCTCGCTGGTGAGTTCCAGGTGGTCAAC--CCATGGCTGCTCAAGGA 25609 Query 113045 CCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGATCTCATGGTGAAAGCGGGTGG 113104 ||| || |||||| |||||| |||| ||||| | | ||| | | || ||| Sbjct 25608 CCTTGTGCAGTGTGGTCTGTGGTCCGAGGACCTGAAGAACCGCATCATCGCCGAGGATGG 25549 Query 113105 TTCCATTCAAAATATTGTGGATATTCCAGATGAAATTAAGAAGTTGTACCGCACAGTTTG 113164 ||| || || || ||| || || ||||| || ||| | ||| || || || Sbjct 25548 TTCTATCCAGAACATTCGCAGCATCCCGGATGATATCAAGGCCCTCTACAAGACCGTCTG 25489 Query 113165 GGAAATCAAGATGAAGGATGTCATTGACATGGCCGCAGATCGTGGTCGC-TTCATTGATC 113223 ||| ||| | || | || | | |||||||| || ||||| ||| ||||| || | Sbjct 25488 GGAGATCTCGCAGAGGACCATCGTCCAGATGGCCGCCGACCGTGG-CGCTTTCATCGACC 25430 Query 113224 AAAGTCAAAGT--ATGAATCTATTCATG---GAAAGTCCAACGATGTCCAAGCTCTCTTC 113278 |||| ||| |||| | |||| ||| || | ||| |||| || | Sbjct 25429 --AGTCTCAGTCCCTGAACATCCACATGCGTGAA---CCTTCTATGGGCAAGATCACGAG 25375 Query 113279 TATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACGGGGATGTATTACCTCCGATCTAA 113338 |||||| | | | |||||| ||||||||| || || ||||| |||||||| | | Sbjct 25374 CATGCACTTCACCGGATGGAAGCTGGGTCTCAAGACTGGCATGTACTACCTCCGCACCCA 25315 Query 113339 GGCAAAGGCGCGCCCAATTCAGTTCA 113364 ||| ||| ||| |||||||||| Sbjct 25314 GGCGGCGGCAGCCCCGATTCAGTTCA 25289 >seq1567 Length=91444 Score = 111 bits (122), Expect = 2e-19 Identities = 108/139 (78%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 102181 AGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTA 102240 |||| || ||||||| || || ||||||||||||||| || ||||| | | | Sbjct 45153 AGCGCCTTGTCGCATTCGCTGCCGTCGAGGGTATCTTCTTCAGCGGCGCCTTCGCCTCCA 45212 Query 102241 TTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCT 102300 | | |||||||||||||| || || ||||| ||||| ||||||||||||||| |||| Sbjct 45213 TCTTCTGGCTCAAGAAGCGTGGCCTGATGCCTGGTCTGACCTTCTCCAACGAGCTGATCT 45272 Query 102301 CTCGTGACGAGGGACTCCA 102319 ||||||||||||| || || Sbjct 45273 CTCGTGACGAGGGTCTACA 45291 >seq1057 Length=53502 Score = 100 bits (110), Expect = 4e-16 Identities = 214/317 (68%), Gaps = 2/317 (1%) Strand=Plus/Plus Query 16064 GGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAG 16123 |||||||||||| ||||||||||||||||| || || | || || ||||||| Sbjct 21602 GGCATCAATCTCGTCAATGAAGACGATGCAGGGCGCGTTCTTCCGGGCCTGCGCAAAGAG 21661 Query 16124 ATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGA-AC 16182 || || || | | ||| || ||||| ||||||||||| || || | | | || || Sbjct 21662 GTCGCGCACTCTCGAGGCACCGACACCGACAAACATCTCGACGAATTCGGAGCCGCTGAC 21721 Query 16183 ATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCG 16242 | || | ||| || || || ||||| || | || |||||| || |||||||| | Sbjct 21722 ACTGAA-GAACGGCACGCCCGACTCACCGGCGGTCGCCTTGGCGAGCAGCGTCTTACCAG 21780 Query 16243 TACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACTTCCAAAGTATC 16302 |||| ||| || | | || ||| || || |||||||||||||| || | | | Sbjct 21781 TACCGGGCGGGCCAGACAAGATGGCGCCACGCGGAATCTTGGCGCCGAGTCGCTGGAAGC 21840 Query 16303 TCTCAGGTTGCTTAAGAAAATCCACAATCTCTTCCAATTCATCTTTGGCGGCGTCAATCC 16362 ||| || ||||| || || | |||| ||| | || | ||||| |||| || | Sbjct 21841 GCTCCGGCTGCTTCAGGAACGCGACAAACTCCATGATCTCGACCTTGGCTTCGTCCATGC 21900 Query 16363 CCTCAACATCGGTAAAC 16379 || | | |||| |||| Sbjct 21901 CCGCGATGTCGGCAAAC 21917 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620724413988960