Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryphonectria_20radicalis_20[genbank_20GCA_5F002179595.1_202017-06-
08] 2,318 sequences; 41,022,676 total letters
Query= NC_014789.1
Length=184409
Score E
Sequences producing significant alignments: (Bits) Value
seq1933 226 3e-54
seq1057 100 3e-16
>seq1933
Length=42650
Score = 226 bits (250), Expect = 3e-54
Identities = 1126/1767 (64%), Gaps = 36/1767 (2%)
Strand=Plus/Plus
Query 105558 TGAACTGAATTGGGCGCGCCTTTGCCTTAGATCGGAGATAGTACATCCCGGTCTTGAGTC 105617
|||||||||| ||| ||| |||| | ||||| |||||||| || |||||||| |
Sbjct 25289 TGAACTGAATCGGGGCTGCCGCCGCCTGGGTGCGGAGGTAGTACATGCCAGTCTTGAGAC 25348
Query 105618 CTTGTTTCCACGCGTACATATGCATAGAAGAGAGCTTGGACATCGTTGGACTTTC---CA 105674
| | ||||| || | ||||| | || |||| ||| | || ||| ||
Sbjct 25349 CCAGCTTCCATCCGGTGAAGTGCATGCTCGTGATCTTGCCCATAGAAGG---TTCACGCA 25405
Query 105675 TGAAAAGATTCATACTTTGACTCTGGTCAATGAA-GCGACCACGTTGTGCCGCCATATCA 105733
|| | |||| ||| |||||| ||||| ||| ||||| | || ||||| |
Sbjct 25406 TGTGGATGTTCAGGGACTGAGACTGGTCGATGAAAGCG-CCACGGTCGGCGGCCATCTGG 25464
Query 105734 ATGACATCCTTCATCTTGATTTCCCACACTGTGCGGTAGAGATTCTTGATATCATCTGGG 105793
| || | || | ||| ||||| || || |||||| |||||||||||| |||
Sbjct 25465 ACGATGGTCCTCTGCGAGATCTCCCAGACGGTCTTGTAGAGGGCCTTGATATCATCCGGG 25524
Query 105794 ATATCTGAGA-TATTTTGAATTGAACCCCCCGCCTTGACCATGAGATCCTTCATATCCTT 105852
|| ||| || | || || || ||||| || | || ||| | | ||||| ||||
Sbjct 25525 ATG-CTGCGAATGTTCTGGATAGAACCATCCTCGGCGATGATGCGGTTCTTCAGGTCCTC 25583
Query 105853 GGACCAAAGACCAATCTTCTTGAGATCATTGACGAG--ATGCTTGTTGACAATCACAAAC 105910
|||||| |||||| || | || || |||| || ||| |||||| | | |||
Sbjct 25584 GGACCACAGACCACACTGCACAAGGTCCTTGAGCAGCCATGG--GTTGACCACCTGGAAC 25641
Query 105911 TCTCCCGCGAGGGTTCTTCTCAGATAGATGTTCGTCGTGTAGGGTTCAAAGCATTCATTA 105970
|| || ||||| | | | | |||||||| | ||||||||| |||||||| || ||
Sbjct 25642 TCACCAGCGAGCACACGCCGCTGGTAGATGTTGGACGTGTAGGGCTCAAAGCACTCGTTG 25701
Query 105971 TTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGA 106030
|| |||| ||| || | ||| ||||| || ||||| || |||||||| | ||||| ||
Sbjct 25702 TTGCCCAGGATCTGCGAGGTCGAGGCAGTGGGCATAGGCGCCATCAACAAGCTGTTGCGG 25761
Query 106031 AGACCCTTTTCCTTGATGCGTTCCTTGAGAACATCCCAGTCGTAGTTGAGCTTGGT-TTC 106089
| || | | |||||| |||| || | |||||||| || | | || ||
Sbjct 25762 ACGCCATGCTGCTTGATCTTGGCCTTCAGGGCGTCCCAGTCCCAGAGGTCCGAGGGCTTG 25821
Query 106090 ACCTT--CCCACATATCAAATTGAAGCACCCCTTGGGACGTGGGAGAACCCTCAAATGTC 106147
|| || ||||||| || | ||||| | || || || |||||| ||||| | | |
Sbjct 25822 ACGTTGTCCCACATGTCGTACTGAAGGATACCCTGAGAAACGGGAGATCCCTCGTACGAC 25881
Query 106148 TCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATG 106207
|||| ||| | | | || | || || || |||| ||||| || |||
Sbjct 25882 AAGTAGGGACCGTCCACCTTGGCAATGTCGCACGATGCGGTGAGGGCGGCGTGGTAGATG 25941
Query 106208 GTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCAC 106267
|| |||||||| | |||| || ||| ||| || || || | ||||
Sbjct 25942 GTCTCAAAGATCTGCTTGTTCAGCTGACGGGCCTCAGGCGACTCGAAGGGCAGGCGGAGA 26001
Query 106268 AAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTA 106327
| || |||| || ||||| ||||| |||| || ||||| | ||| ||||| ||
Sbjct 26002 GCCAAGAAGGCATCAGCCAGACCCTGAACGCCCACGCCGATAGGGCGGTGGCGCATGTTG 26061
Query 106328 GACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTG 106387
|| || || || || ||||| | || | || | || ||| || || |
Sbjct 26062 CTGTTGCGAGCCTCCTGGACAGGATAGTAGTTGATATCGACGATCTTGTTCAGGTTGCGG 26121
Query 106388 GTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAA--AGTGCGAGTCTCTTCAT 106445
|||| | |||| ||| || || | | | | ||| || |||| | |
Sbjct 26122 ACGACAACTTGGGTGACTTCGTGCAGCAGCTGGAAGTTGTAGCAGT-CGT-TCTCATAGT 26179
Query 106446 TGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTG 106505
||| ||| || |||||||| || |||| ||||| ||||| ||| || | |
Sbjct 26180 CGACGAACTGAGGCAGGGCGATGGACGCCAGGTTGCAGACAGCAACCTCGTCAGGGGCAG 26239
Query 106506 TGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGT 106565
|||||| | || || || || | |||||| || || || |||| ||||| ||||
Sbjct 26240 AGTACTCGATGATCTCCGTGCAGAGGTTGGAGCTGCGGATGGTGCCCAGGTTCTTCTGGT 26299
Query 106566 TACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTG 106625
| ||||| |||| |||||||| |||||| | || | || ||||| ||||| |
Sbjct 26300 TGCTCTTGCGGTTGGCGTGGTCCTTGTACAGCATGAATGGGTTGCCGGTCTCGGTCTGCG 26359
Query 106626 ACTTGAGAATTGCCTTCCACA-CATCGGCGGCTGGTACAATGGCGT-TGGCC-CGTCCCT 106682
|| ||| || || | ||||| | || | | || ||| | | | ||||| || ||||
Sbjct 26360 CCTCGAGGATGGCATACCACAGCTTCTGTGCCTT---CAAGGTCTTCTGGCCGCGACCCT 26416
Query 106683 CCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTG 106742
| ||| ||||| ||| | ||| || |||||||| || ||||| || || |
Sbjct 26417 CGCGCTCATACTTCTCGTACAAGGCCTCGAACTCCTCGCCGTAGCAGTCGGCCAGGCCGG 26476
Query 106743 GTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAA 106802
| || || || || | ||| | ||| | || || ||| || ||||||||||| |
Sbjct 26477 GACACTCGTTGGGGCACATAAGGGTCCAGTCGCCGTTCTTCTCCACACGCTTCATGAAGA 26536
Query 106803 GGTCTGGAATCCACAGGGATGAAAAGAGATCTCTA-CACCGAGCCTCTTCGTCACCTTGG 106861
| || || ||||| |||| ||||| || | | ||| || ||||||| | || |||
Sbjct 26537 GATCAGGGATCCAGAGGGCCAGGAAGAGGTCACGAGCACGGA-CCTCTTCCTTTCCGTGG 26595
Query 106862 TTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCG 106921
|| || | || |||||||| | || ||| |||||||| ||||| || |||| ||
Sbjct 26596 TTCTTGCGCAGGTCGAGGAACTCGAAGACATCAGCGTGCCACGGCTCCAGGTAGATGGCA 26655
Query 106922 ATAGATCC----CTTTCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATAC 106977
| | || | | | | ||| | || | || ||||| || ||| ||| || ||
Sbjct 26656 AAGGCACCGGGGCGCTTGTTG-CCACCCTGGTCGACGTAGCGAGCAGTGTTGTTGAAGAC 26714
Query 106978 GCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATT 107037
|| ||||| || || || |||| || || || || || |||| || | |
Sbjct 26715 ACGCAGCATGGGGATGATGCCATTAGACGTGCCGTTGGTGCCGGCAATATAGGAGCCAGT 26774
Query 107038 GGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACA 107097
||| | | |||| | | ||||| || || ||| ||| ||||| |||||
Sbjct 26775 GGCACGGATGCGGTGGACATTGAGACCAATGCCTCCGGCCATCTTGGAGATCATGGCACA 26834
Query 107098 CTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCA 107157
| | || || |||||||||| | ||| |||||||| || | | ||||||||
Sbjct 26835 GGTCTTGAGGGTGTCATAGATACCCTCGATGCTATCCTCCTTCATGTCCACTAGGAAGCA 26894
Query 107158 ACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAA 107217
|||| ||| | || || || || ||||| || || || | ||||| ||||
Sbjct 26895 CGATGACAGCTGTGCCTGAGGCGTGCCGGCGTTGAATAGAGTCGGCGAAGCGTGTGTGAA 26954
Query 107218 CATACCT-TGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGA 107276
| || | | ||| | | || ||| ||||||| || || |||| || || ||
Sbjct 26955 GA-ACTTGTTGGAGAGGTAGTTGTAGGTCTCCAGAACCCTCTCGATGTTGTCTCCCCAGA 27013
Query 107277 TGCCGATGGCCACACGCATAAACATGT 107303
|||| | ||| |||||||| | |||||
Sbjct 27014 TGCCAACGGCGACACGCATCAGCATGT 27040
>seq1057
Length=53502
Score = 100 bits (110), Expect = 3e-16
Identities = 214/317 (68%), Gaps = 2/317 (1%)
Strand=Plus/Plus
Query 9371 GGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAG 9430
|||||||||||| ||||||||||| || || || || | ||||| |||||||
Sbjct 21602 GGCATCAATCTCGTCAATGAAGACGATGCAGGGCGCGTTCTTCCGGGCCTGCGCAAAGAG 21661
Query 9431 ATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCG-GAAC 9489
||||| || || ||| || ||||| ||||||||||| || || | | | || ||
Sbjct 21662 GTCGCGCACTCTCGAGGCACCGACACCGACAAACATCTCGACGAATTCGGAGCCGCTGAC 21721
Query 9490 ATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCG 9549
| | || ||| || || || ||||| || | || |||||| || |||||||| |
Sbjct 21722 ACT-GAAGAACGGCACGCCCGACTCACCGGCGGTCGCCTTGGCGAGCAGCGTCTTACCAG 21780
Query 9550 TACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCCACTTCCAAAGTATC 9609
|||| ||| || | | || ||| || || |||||||||||||| || | | |
Sbjct 21781 TACCGGGCGGGCCAGACAAGATGGCGCCACGCGGAATCTTGGCGCCGAGTCGCTGGAAGC 21840
Query 9610 TCTCAGGTTGCTTGAGAAAATCCACAATCTCTTCCAATTCATCTTTGGCGGCGTCAATCC 9669
||| || ||||| || || | |||| ||| | || | ||||| |||| || |
Sbjct 21841 GCTCCGGCTGCTTCAGGAACGCGACAAACTCCATGATCTCGACCTTGGCTTCGTCCATGC 21900
Query 9670 CCTCAACATCGGTAAAC 9686
|| | | |||| ||||
Sbjct 21901 CCGCGATGTCGGCAAAC 21917
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 589963705306320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |