Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryphonectria_20radicalis_20[genbank_20GCA_5F002179595.1_202017-06- 08] 2,318 sequences; 41,022,676 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq1933 226 3e-54 seq1057 100 3e-16 >seq1933 Length=42650 Score = 226 bits (250), Expect = 3e-54 Identities = 1126/1767 (64%), Gaps = 36/1767 (2%) Strand=Plus/Plus Query 105558 TGAACTGAATTGGGCGCGCCTTTGCCTTAGATCGGAGATAGTACATCCCGGTCTTGAGTC 105617 |||||||||| ||| ||| |||| | ||||| |||||||| || |||||||| | Sbjct 25289 TGAACTGAATCGGGGCTGCCGCCGCCTGGGTGCGGAGGTAGTACATGCCAGTCTTGAGAC 25348 Query 105618 CTTGTTTCCACGCGTACATATGCATAGAAGAGAGCTTGGACATCGTTGGACTTTC---CA 105674 | | ||||| || | ||||| | || |||| ||| | || ||| || Sbjct 25349 CCAGCTTCCATCCGGTGAAGTGCATGCTCGTGATCTTGCCCATAGAAGG---TTCACGCA 25405 Query 105675 TGAAAAGATTCATACTTTGACTCTGGTCAATGAA-GCGACCACGTTGTGCCGCCATATCA 105733 || | |||| ||| |||||| ||||| ||| ||||| | || ||||| | Sbjct 25406 TGTGGATGTTCAGGGACTGAGACTGGTCGATGAAAGCG-CCACGGTCGGCGGCCATCTGG 25464 Query 105734 ATGACATCCTTCATCTTGATTTCCCACACTGTGCGGTAGAGATTCTTGATATCATCTGGG 105793 | || | || | ||| ||||| || || |||||| |||||||||||| ||| Sbjct 25465 ACGATGGTCCTCTGCGAGATCTCCCAGACGGTCTTGTAGAGGGCCTTGATATCATCCGGG 25524 Query 105794 ATATCTGAGA-TATTTTGAATTGAACCCCCCGCCTTGACCATGAGATCCTTCATATCCTT 105852 || ||| || | || || || ||||| || | || ||| | | ||||| |||| Sbjct 25525 ATG-CTGCGAATGTTCTGGATAGAACCATCCTCGGCGATGATGCGGTTCTTCAGGTCCTC 25583 Query 105853 GGACCAAAGACCAATCTTCTTGAGATCATTGACGAG--ATGCTTGTTGACAATCACAAAC 105910 |||||| |||||| || | || || |||| || ||| |||||| | | ||| Sbjct 25584 GGACCACAGACCACACTGCACAAGGTCCTTGAGCAGCCATGG--GTTGACCACCTGGAAC 25641 Query 105911 TCTCCCGCGAGGGTTCTTCTCAGATAGATGTTCGTCGTGTAGGGTTCAAAGCATTCATTA 105970 || || ||||| | | | | |||||||| | ||||||||| |||||||| || || Sbjct 25642 TCACCAGCGAGCACACGCCGCTGGTAGATGTTGGACGTGTAGGGCTCAAAGCACTCGTTG 25701 Query 105971 TTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGA 106030 || |||| ||| || | ||| ||||| || ||||| || |||||||| | ||||| || Sbjct 25702 TTGCCCAGGATCTGCGAGGTCGAGGCAGTGGGCATAGGCGCCATCAACAAGCTGTTGCGG 25761 Query 106031 AGACCCTTTTCCTTGATGCGTTCCTTGAGAACATCCCAGTCGTAGTTGAGCTTGGT-TTC 106089 | || | | |||||| |||| || | |||||||| || | | || || Sbjct 25762 ACGCCATGCTGCTTGATCTTGGCCTTCAGGGCGTCCCAGTCCCAGAGGTCCGAGGGCTTG 25821 Query 106090 ACCTT--CCCACATATCAAATTGAAGCACCCCTTGGGACGTGGGAGAACCCTCAAATGTC 106147 || || ||||||| || | ||||| | || || || |||||| ||||| | | | Sbjct 25822 ACGTTGTCCCACATGTCGTACTGAAGGATACCCTGAGAAACGGGAGATCCCTCGTACGAC 25881 Query 106148 TCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATG 106207 |||| ||| | | | || | || || || |||| ||||| || ||| Sbjct 25882 AAGTAGGGACCGTCCACCTTGGCAATGTCGCACGATGCGGTGAGGGCGGCGTGGTAGATG 25941 Query 106208 GTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCAC 106267 || |||||||| | |||| || ||| ||| || || || | |||| Sbjct 25942 GTCTCAAAGATCTGCTTGTTCAGCTGACGGGCCTCAGGCGACTCGAAGGGCAGGCGGAGA 26001 Query 106268 AAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTA 106327 | || |||| || ||||| ||||| |||| || ||||| | ||| ||||| || Sbjct 26002 GCCAAGAAGGCATCAGCCAGACCCTGAACGCCCACGCCGATAGGGCGGTGGCGCATGTTG 26061 Query 106328 GACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTG 106387 || || || || || ||||| | || | || | || ||| || || | Sbjct 26062 CTGTTGCGAGCCTCCTGGACAGGATAGTAGTTGATATCGACGATCTTGTTCAGGTTGCGG 26121 Query 106388 GTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAA--AGTGCGAGTCTCTTCAT 106445 |||| | |||| ||| || || | | | | ||| || |||| | | Sbjct 26122 ACGACAACTTGGGTGACTTCGTGCAGCAGCTGGAAGTTGTAGCAGT-CGT-TCTCATAGT 26179 Query 106446 TGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTG 106505 ||| ||| || |||||||| || |||| ||||| ||||| ||| || | | Sbjct 26180 CGACGAACTGAGGCAGGGCGATGGACGCCAGGTTGCAGACAGCAACCTCGTCAGGGGCAG 26239 Query 106506 TGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGT 106565 |||||| | || || || || | |||||| || || || |||| ||||| |||| Sbjct 26240 AGTACTCGATGATCTCCGTGCAGAGGTTGGAGCTGCGGATGGTGCCCAGGTTCTTCTGGT 26299 Query 106566 TACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTG 106625 | ||||| |||| |||||||| |||||| | || | || ||||| ||||| | Sbjct 26300 TGCTCTTGCGGTTGGCGTGGTCCTTGTACAGCATGAATGGGTTGCCGGTCTCGGTCTGCG 26359 Query 106626 ACTTGAGAATTGCCTTCCACA-CATCGGCGGCTGGTACAATGGCGT-TGGCC-CGTCCCT 106682 || ||| || || | ||||| | || | | || ||| | | | ||||| || |||| Sbjct 26360 CCTCGAGGATGGCATACCACAGCTTCTGTGCCTT---CAAGGTCTTCTGGCCGCGACCCT 26416 Query 106683 CCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTG 106742 | ||| ||||| ||| | ||| || |||||||| || ||||| || || | Sbjct 26417 CGCGCTCATACTTCTCGTACAAGGCCTCGAACTCCTCGCCGTAGCAGTCGGCCAGGCCGG 26476 Query 106743 GTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAA 106802 | || || || || | ||| | ||| | || || ||| || ||||||||||| | Sbjct 26477 GACACTCGTTGGGGCACATAAGGGTCCAGTCGCCGTTCTTCTCCACACGCTTCATGAAGA 26536 Query 106803 GGTCTGGAATCCACAGGGATGAAAAGAGATCTCTA-CACCGAGCCTCTTCGTCACCTTGG 106861 | || || ||||| |||| ||||| || | | ||| || ||||||| | || ||| Sbjct 26537 GATCAGGGATCCAGAGGGCCAGGAAGAGGTCACGAGCACGGA-CCTCTTCCTTTCCGTGG 26595 Query 106862 TTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCG 106921 || || | || |||||||| | || ||| |||||||| ||||| || |||| || Sbjct 26596 TTCTTGCGCAGGTCGAGGAACTCGAAGACATCAGCGTGCCACGGCTCCAGGTAGATGGCA 26655 Query 106922 ATAGATCC----CTTTCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATAC 106977 | | || | | | | ||| | || | || ||||| || ||| ||| || || Sbjct 26656 AAGGCACCGGGGCGCTTGTTG-CCACCCTGGTCGACGTAGCGAGCAGTGTTGTTGAAGAC 26714 Query 106978 GCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATT 107037 || ||||| || || || |||| || || || || || |||| || | | Sbjct 26715 ACGCAGCATGGGGATGATGCCATTAGACGTGCCGTTGGTGCCGGCAATATAGGAGCCAGT 26774 Query 107038 GGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACA 107097 ||| | | |||| | | ||||| || || ||| ||| ||||| ||||| Sbjct 26775 GGCACGGATGCGGTGGACATTGAGACCAATGCCTCCGGCCATCTTGGAGATCATGGCACA 26834 Query 107098 CTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCA 107157 | | || || |||||||||| | ||| |||||||| || | | |||||||| Sbjct 26835 GGTCTTGAGGGTGTCATAGATACCCTCGATGCTATCCTCCTTCATGTCCACTAGGAAGCA 26894 Query 107158 ACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAA 107217 |||| ||| | || || || || ||||| || || || | ||||| |||| Sbjct 26895 CGATGACAGCTGTGCCTGAGGCGTGCCGGCGTTGAATAGAGTCGGCGAAGCGTGTGTGAA 26954 Query 107218 CATACCT-TGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGA 107276 | || | | ||| | | || ||| ||||||| || || |||| || || || Sbjct 26955 GA-ACTTGTTGGAGAGGTAGTTGTAGGTCTCCAGAACCCTCTCGATGTTGTCTCCCCAGA 27013 Query 107277 TGCCGATGGCCACACGCATAAACATGT 107303 |||| | ||| |||||||| | ||||| Sbjct 27014 TGCCAACGGCGACACGCATCAGCATGT 27040 >seq1057 Length=53502 Score = 100 bits (110), Expect = 3e-16 Identities = 214/317 (68%), Gaps = 2/317 (1%) Strand=Plus/Plus Query 9371 GGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAG 9430 |||||||||||| ||||||||||| || || || || | ||||| ||||||| Sbjct 21602 GGCATCAATCTCGTCAATGAAGACGATGCAGGGCGCGTTCTTCCGGGCCTGCGCAAAGAG 21661 Query 9431 ATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCG-GAAC 9489 ||||| || || ||| || ||||| ||||||||||| || || | | | || || Sbjct 21662 GTCGCGCACTCTCGAGGCACCGACACCGACAAACATCTCGACGAATTCGGAGCCGCTGAC 21721 Query 9490 ATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCG 9549 | | || ||| || || || ||||| || | || |||||| || |||||||| | Sbjct 21722 ACT-GAAGAACGGCACGCCCGACTCACCGGCGGTCGCCTTGGCGAGCAGCGTCTTACCAG 21780 Query 9550 TACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCCACTTCCAAAGTATC 9609 |||| ||| || | | || ||| || || |||||||||||||| || | | | Sbjct 21781 TACCGGGCGGGCCAGACAAGATGGCGCCACGCGGAATCTTGGCGCCGAGTCGCTGGAAGC 21840 Query 9610 TCTCAGGTTGCTTGAGAAAATCCACAATCTCTTCCAATTCATCTTTGGCGGCGTCAATCC 9669 ||| || ||||| || || | |||| ||| | || | ||||| |||| || | Sbjct 21841 GCTCCGGCTGCTTCAGGAACGCGACAAACTCCATGATCTCGACCTTGGCTTCGTCCATGC 21900 Query 9670 CCTCAACATCGGTAAAC 9686 || | | |||| |||| Sbjct 21901 CCGCGATGTCGGCAAAC 21917 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589963705306320