Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryphonectria_20radicalis_20[genbank_20GCA_5F002179595.1_202017-06- 08] 2,318 sequences; 41,022,676 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq757 138 3e-27 seq1543 129 1e-24 >seq757 Length=325751 Score = 138 bits (152), Expect = 3e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || |||||||| || ||||| ||||| |||| || || | || || ||| Sbjct 30042 ACCAGGTGCAGGGTGGACTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCG 29983 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| || || || |||||||| || ||||| || ||||| || Sbjct 29982 AGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGG 29923 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 ||||| |||||| || || |||||||| || ||||| |||||||| | ||||| Sbjct 29922 ATTTTGGCCTTGACATTGTCGATGGTGTCGGATGACTCCACCTCAAGGGTGATAGTCTTG 29863 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || || ||||| | ||||| Sbjct 29862 CCCGTGAGGGTCTTGACGAAGATCTGCAT 29834 >seq1543 Length=161075 Score = 129 bits (142), Expect = 1e-24 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || |||||||| |||||||| || || || ||||| |||| || || | || || ||| Sbjct 71960 ACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCG 72019 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || ||||| || || || || ||||| ||||| ||||| || ||||| ||| Sbjct 72020 AGCTGCTTGCCGGCGAAAATCAGGCGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTGA 72079 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||| ||||| || |||||||| || || || ||||| || | ||||| Sbjct 72080 ATCTTGGCCTTCACGTTGTCGATGGTGTCGGAGGACTCGACCTCAAGAGTGATGGTCTTG 72139 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || || ||||| | ||||| Sbjct 72140 CCGGTGAGGGTCTTGACGAAGATCTGCAT 72168 Score = 120 bits (132), Expect = 7e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| ||||| ||||| || || || ||||| |||| || || | || || ||| Sbjct 71732 ACGAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTACGGCCGTCCTCG 71791 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| || || || |||||||| || || || || ||||| ||| Sbjct 71792 AGCTGCTTTCCAGCAAAGATGAGGCGCTGCTGGTCTGGGGGGATACCCTCCTTGTCCTGA 71851 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||| ||||| || |||||||| || || || || ||||| | ||||| Sbjct 71852 ATCTTGGCCTTCACGTTGTCGATGGTGTCGGAGGACTCGACCTCGAGGGTGATGGTCTTG 71911 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || || ||||| | ||||| Sbjct 71912 CCGGTGAGCGTCTTGACGAAGATCTGCAT 71940 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109448649089906