Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryphonectria_20radicalis_20[genbank_20GCA_5F002179595.1_202017-06-
08] 2,318 sequences; 41,022,676 total letters
Query= NC_017940.1
Length=127732
Score E
Sequences producing significant alignments: (Bits) Value
seq813 190 2e-43
>seq813
Length=186750
Score = 190 bits (210), Expect = 2e-43
Identities = 441/670 (66%), Gaps = 56/670 (8%)
Strand=Plus/Plus
Query 29766 GGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTA 29825
||||||| | ||||||||||| ||||| ||| | |||| || ||||| |||| |||
Sbjct 155361 GGGAAAGTCGCGCGGCTCCCTCTCCAGCTGTGTCCTGAGCGCGTCGACGTGGTCCACGTA 155420
Query 29826 GACGTGAGCGTCTCCCAGGGTGTG-GACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAG 29884
||| || ||||| |||| | ||| | || || ||||| | || | ||||| |
Sbjct 155421 GACATGCGCGTCGCCCATGACGTGCGTCAGGCTG-CCCGGCACGAGATCACACACGTGCG 155479
Query 29885 CCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGT 29944
| ||||||| || || || | ||||||||||||||| || || || ||||| |||||||
Sbjct 155480 CGATCATGTGTGTCAGCAGCGCGTAGCTGGCGATGTTGAACGGCACGCCGAGGCCCATGT 155539
Query 29945 CCCCCGACCTCTGGTAGAGCTGACACGAGAGCT----------CTCCG--TCGC------ 29986
| | |||| |||||| ||||| || || | || || ||||
Sbjct 155540 CGCAGGACCGCTGGTACAGCTGGCAGTGCAGGTGGCCCTTGGGCTTCGCCTCGCCATCCC 155599
Query 29987 -----TC-------------------------ACGTAAAACTG---ACACATGGTGTGGC 30013
|| ||||| ||||| | ||||| || |
Sbjct 155600 CGCTGTCCTGCCCCGCCGGCCGTGGATACGATACGTAGAACTGCGCAAACATG---TGAC 155656
Query 30014 ACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCC 30073
| || || || ||||||| || ||||||||||||||| |||| || |||||||||||
Sbjct 155657 AGGGCGGCAGCGCCATGATCTTCAGGTCTTTGGGGTTCCACGCGCTCATGATGATGCGCC 155716
Query 30074 TGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCC 30133
||| | ||||| |||||| || | | | | |||||| || || ||| |
Sbjct 155717 GGTCGTACGGGTTCGTCCTGAGCTTGTGTATGACCTCCGCCAGCTGGTCGACGCCCTGGC 155776
Query 30134 CCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGT 30193
||| |||||| | |||| |||| |||||| || || || || | ||||||||| ||||
Sbjct 155777 CCGTGTAGTCCGTCCTCGCGTCCACGTACTCGGCCCCAAAGTGGCGCCACTGGAAGCCGT 155836
Query 30194 ACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTC 30253
|||| || || ||||| ||| | || | |||| || |||| ||||| || || |
Sbjct 155837 ACACGGGGCCGAGGTCGCCCACCTCGCGGTGCGAGAGGCCCACGCCGTCCAGGAACTCGC 155896
Query 30254 TGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGG 30313
|| |||||| ||||||||||||| || |||| |||| ||| ||| || |
Sbjct 155897 GCGACCCGTTGCCGTCCCAGATCTTGACGCCCTGCTCGCTGAGGGACAGGGACGACGTCG 155956
Query 30314 ACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCG 30373
|| ||||||||| || ||||| | | ||| ||||| || || | |||||| |
Sbjct 155957 CGCCCGAGACGAACCAGAGGAGCTCGGCGAGGACCGCCTTGTGGAACACGCGCTTGGTGG 156016
Query 30374 TGAGGAGGGG 30383
||||||| ||
Sbjct 156017 TGAGGAGCGG 156026
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 408606056297414
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |