Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryphonectria_20radicalis_20[genbank_20GCA_5F002179595.1_202017-06- 08] 2,318 sequences; 41,022,676 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq1933 502 5e-137 seq1567 165 2e-35 >seq1933 Length=42650 Score = 502 bits (556), Expect = 5e-137 Identities = 1162/1730 (67%), Gaps = 52/1730 (3%) Strand=Plus/Plus Query 212696 GTTCAGGGACTGACTCTGGTCTATGAATGGGGCCCTGTCAGCGGCCATGTCTATGATATC 212755 ||||||||||||| |||||| ||||| | | | | ||| |||||||| | | ||| Sbjct 25413 GTTCAGGGACTGAGACTGGTCGATGAAAGCGCCACGGTCGGCGGCCATCTGGACGATGGT 25472 Query 212756 TCTCTGGGAGAGCTCCCACACGGTCTTGAAGATTTCTTTGAGGTCCTCTGGGAAGCCGGG 212815 ||||| |||| |||||| ||||||||| ||| | |||| || || |||| || | | Sbjct 25473 CCTCTGCGAGATCTCCCAGACGGTCTTGTAGAGGGCCTTGATATCATCCGGGATGCTGCG 25532 Query 212816 GATGTTCTGCACAGACCC--CCTGTGT-ATGGTCAGCTGCAGGCGCATGTCCTCGTTCCA 212872 |||||||| | ||| || ||| | ||| | | | | || ||||||| ||| Sbjct 25533 AATGTTCTGGATAGAACCATCCTCGGCGATGATGCGGTTCTT---CAGGTCCTCGGACCA 25589 Query 212873 GAGGCCCCTGGTCTCCAGGCACTTGACCAGGTGAGGGTTGACTATCTGGAAGTCACCTGA 212932 || || | | | ||| ||||| ||| |||||||| | |||||| ||||| | Sbjct 25590 CAGACCACACTGCACAAGGTCCTTGAGCAGCCATGGGTTGACCACCTGGAACTCACCAGC 25649 Query 212933 GAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGATGCTCTCGTTGTTCCCCAG 212992 |||||| | || |||||| | ||| || ||||||||||| | || ||||||||| ||||| Sbjct 25650 GAGCACACGCCGCTGGTAGATGTTGGACGTGTAGGGCTCAAAGCACTCGTTGTTGCCCAG 25709 Query 212993 AATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAGACTGTTCCTCACTCCGTG 213052 ||||| | || ||| |||||||| || |||| || | ||||| | || || || Sbjct 25710 GATCTGCGAGGTCGAGGCAGTGGGCATAGGCGCCATCAACAAGCTGTTGCGGACGCCATG 25769 Query 213053 CTCGCCGATGAGGCGCCGAAGCTCTGCCCAGTCCCATCTGCCAGACAGGTCCTCGTCCTT 213112 || ||| | | || | |||||||||| |||||| | ||| Sbjct 25770 CTGCTTGATCTTGGCCTTCAGGGCGTCCCAGTCCCAG---------AGGTCCGAGGGCTT 25820 Query 213113 CACGTT---CCACATGTCAAACTGCAAGATGCCTTTGCTCACGGGGCTGCCCTGGTAAGA 213169 ||||| ||||||||| |||| | ||| || | ||||| |||| ||| || Sbjct 25821 GACGTTGTCCCACATGTCGTACTGAAGGATACCCTGAGAAACGGGAGATCCCTCGTACGA 25880 Query 213170 GGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCAGGACGCCTGCAGGGCAGCGTAGTAGAT 213229 ||||||| || | | ||||||| | ||||| || || ||||| |||| |||||| Sbjct 25881 CAAGTAGGGACCGTCCACCTTGGCAATGTCGCACGATGCGGTGAGGGCGGCGTGGTAGAT 25940 Query 213230 GGTTTCAAATATCTCCCTGTTGAGCTTCTTGGCCTCTGGGGACGTGAAGGGCATCATCAT 213289 ||| ||||| |||| | |||| |||| |||||| || ||| |||||||| | Sbjct 25941 GGTCTCAAAGATCTGCTTGTTCAGCTGACGGGCCTCAGGCGACTCGAAGGGCAGGCGGAG 26000 Query 213290 GCGTTGGAACACATCAGCCAGCCCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAGGTT 213349 ||| |||||||||| ||||| || || | |||||| || | ||| | || ||| Sbjct 26001 AGCCAAGAAGGCATCAGCCAGACCCTGAACGCCCACGCCGATAGGGCGGTGGCGCATGTT 26060 Query 213350 AGACTTG-GAGCACTCCTCCAAGGGGTAAAAGTTGCAGTCGATGATCTTGTTGAGGTTGC 213408 ||| |||| ||||| | || || ||||| |||| ||||||||| ||||||| Sbjct 26061 GCTGTTGCGAGC-CTCCTGGACAGGATAGTAGTTGATATCGACGATCTTGTTCAGGTTGC 26119 Query 213409 GGGTGGCCACTTTGGTGACATGGGCCAGGTACTCGTGATTGAACACGTAGCCCCCGTCCT 213468 || | | |||| |||||| | | ||| || | ||| | || | | | | | Sbjct 26120 GGACGACAACTTGGGTGACTTCGTGCAGCAGCTGGAAGTTGTAGCAGTCGTTCTCATAGT 26179 Query 213469 GCACAAACTCAGGCAGGGCGATGCTGGCCAGGTTGCAAACGGCCACCTCCTGAGAGTCTG 213528 || |||| ||||||||||||| ||||||||||| || || ||||| | || | | | Sbjct 26180 CGACGAACTGAGGCAGGGCGATGGACGCCAGGTTGCAGACAGCAACCTCGTCAGGGGCAG 26239 Query 213529 TGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGT 213588 |||||| |||||||| ||||| |||||| || ||||||||||||||||||| |||| Sbjct 26240 AGTACTCGATGATCTCCGTGCAGAGGTTGGAGCTGCGGATGGTGCCCAGGTTCTTCTGGT 26299 Query 213589 TTGACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGG 213648 | ||| |||||| |||||||| |||||| | ||| |||||||| ||| | Sbjct 26300 TGCTCTTGCGGTTGGCGTGGTCCTTGTACAGCATGAATGGGTTGCCGGTCTCGGTCTGCG 26359 Query 213649 ACACCAGTATCTGGCT--CCAGAGGTACCTGGCCTTGACCACCCGCCTGACAGCTCCGGG 213706 | | || || ||| ||| || | | ||||| | | | || | || | Sbjct 26360 CCTCGAGGAT--GGCATACCACAGCTTCTGTGCCTTCAAGGTCTTC-TGGCCGCGAC--- 26413 Query 213707 CGTAGC-CTCGTACTGTTCGTAGAGCTCGTTGAATTCGTGGCCCCAGACCCTGTCCAGTC 213765 | | || ||| |||| ||||| | | | ||| || | ||| || | |||| | Sbjct 26414 CCTCGCGCTCATACTTCTCGTACAAGGCCTCGAACTCCTCGCCGTAGCAGTCGGCCAGGC 26473 Query 213766 CCGGACAGGATGCGGGACACATGAGGCTCCAGTCCCCGT-CATCTCTGACTCTCTGCATG 213824 | ||||| ||| ||||| ||| ||||||| |||| | |||| || | || |||| Sbjct 26474 CGGGACACTCGTTGGGGCACATAAGGGTCCAGTCGCCGTTCTTCTCC-ACACGCTTCATG 26532 Query 213825 AACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCA 213884 || || || |||| ||| || || ||| ||||| | | | ||| ||| ||| Sbjct 26533 AAGAGATCAGGGATCCAGAGGGCCAGGAAGAGGTCACGAGCACGGACCTCTTCCTTTCCG 26592 Query 213885 GAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATG 213944 ||| |||||||| || || || || |||| || |||||||||||||||| ||||||| Sbjct 26593 TGGTTCTTGCGCAGGTCGAGGAACTCGAAGACATCAGCGTGCCACGGCTCCAGGTAGATG 26652 Query 213945 GCAAAGGCGCCCG---GCCTCTTGCCGCCCTGGTCCACCAGCCTGGCCACCA----TGTT 213997 |||||||| || | || | ||||| |||||||| | | | || | || |||| Sbjct 26653 GCAAAGGCACCGGGGCGCTTGTTGCCACCCTGGTCGA----CGTAGCGAGCAGTGTTGTT 26708 Query 213998 GAAGATGCGCAGGACGGGTACCAGCCCGTTGGACTGTCCGTTGGTTCCCGCTATATACGA 214057 ||||| ||||| | ||| | | || || ||| |||||||| || || ||||| || Sbjct 26709 GAAGACACGCAGCATGGGGATGATGCCATTAGACGTGCCGTTGGTGCCGGCAATATAGGA 26768 Query 214058 GCCGGAGGCCCTCA--GGTTGCTCATGGAGAGCCCTATGCCACCGGCGTACTTGGAGATC 214115 ||| | ||| | | | || ||| |||| || ||||| ||||| |||||||||| Sbjct 26769 GCCAGTGGCACGGATGCGGTGGACATTGAGA--CCAATGCCTCCGGCCATCTTGGAGATC 26826 Query 214116 ATGGCGCAGCGCCTCACAGTCTCCATGATGCCGGCCATGCTGTCATCTGTGAGGTTCAGC 214175 ||||| ||| | | | || || ||| || | ||||| || || | | || || Sbjct 26827 ATGGCACAGGTCTTGAGGGTGTCATAGATACCCTCGATGCTATCCTCCTTCATGTCCACT 26886 Query 214176 AAGAAGCAGCTCGAGAGCTGGGGCCTG-GACGAGCCAGAGTTGAAAAGCGTGGGGCTGGC 214234 | |||||| || |||| | ||||| | || ||| | |||||| || || || || Sbjct 26887 AGGAAGCACGATGACAGCT-GTGCCTGAGGCGTGCCGGCGTTGAATAGAGTCGGCGAAGC 26945 Query 214235 ATGGATCATAAACTTGTTAGAGAGGAGCCTGTAGGTCTCCAGGACTGAGGGGATGTCGTG 214294 || | | |||||||| |||||| ||||||||||||| || ||||| || Sbjct 26946 GTGTGTGAAGAACTTGTTGGAGAGGTAGTTGTAGGTCTCCAGAACCCTCTCGATGTTGTC 27005 Query 214295 CTTGTGGATCTGTAGAGCGCACCTCATCAGCATGTGCTGGGGCCTCTCTATGGGTCCTT- 214353 ||| | ||| | ||||||||||||||| |||| ||| | | |||| Sbjct 27006 TCCCCAGATGCCAACGGCGACACGCATCAGCATGTGCTGTGGCCGCTCGA--CGACCTTG 27063 Query 214354 -TGGGGCCCTTGAGCAGGTAGGAGCGCTCCAGAGTCTTGAACCCAAAGTA 214402 | | |||||| || || ||||||||||| |||||||| || ||||| Sbjct 27064 CCGTTGAGCTTGAGGAGATACGAGCGCTCCAGGGTCTTGAAGCCGAAGTA 27113 >seq1567 Length=91444 Score = 165 bits (182), Expect = 2e-35 Identities = 349/515 (68%), Gaps = 7/515 (1%) Strand=Plus/Minus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 ||||||||| || || | ||||| |||||||| ||||| || | | ||||||||||| Sbjct 45595 CTGGTAGTCACCAACACGCTTCTCGAAGAAGTTGGTCTTGCCGCCAAGGGAGATGTTCTC 45536 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAG-GCCCATCTGTTCCAGCA 47957 ||||||| ||||||||||| | || || ||| | || ||| | | || | Sbjct 45535 CATGAAGTCGAAGGGGTTGGAAGACTTGTAGACCT-TCTCGTTGCCGAGGGCGACGAGGA 45477 Query 47958 GGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGG 48017 | | || |||||| |||| ||||| | ||| |||||| ||||||||| | ||| Sbjct 45476 GACGGTCGGCGACGAACTCAATGTACTGCTTCATCAGGGTGGCGTTCATGCCGAGCAGGC 45417 Query 48018 ACAC-GGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATC 48076 ||| ||||| |||| || || ||||||||||| || ||||| ||| | || Sbjct 45416 -CACAGGGCAGGGCCTCAGTCAGGAACTCCTTCTCAATGACAACGGCATCCGTGATGATA 45358 Query 48077 TGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCA 48136 || ||||| || ||| |||| |||||| || | |||| |||||| Sbjct 45357 GCCTCTACGCGCTGCTTGCTGGGCCGGTTGTTCAGGTG---GGAGAACAGCAGGCAGGCG 45301 Query 48137 AAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGC 48196 ||||| | || | || ||||| || ||| ||| ||||||||||| ||||||||| Sbjct 45300 AAGTCAGTATGTAGACCCTCGTCACGAGAGATCAGCTCGTTGGAGAAGGTCAGACCAGGC 45241 Query 48197 ATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCC 48256 || | || | || ||||||||||| || | ||||| | ||| ||||||||| ||| Sbjct 45240 ATCAGGCCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCGCCGCTGAAGAAGATACCC 45181 Query 48257 TCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCAG 48316 || || || ||||| ||| || | || || | | | | | ||| |||||| Sbjct 45180 TCGACGGCAGCGAATGCGACAAGGCGCTGCGCGTAGGTGGACTCCCGGTCCTGGATCCAC 45121 Query 48317 GAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGG 48351 || |||||||| |||||||| |||||| || Sbjct 45120 CTCAGAGCCCAGTCGGCCTTCTTGCGGATGCAAGG 45086 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931505808837120