Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryphonectria_20radicalis_20[genbank_20GCA_5F002179595.1_202017-06- 08] 2,318 sequences; 41,022,676 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq1933 271 1e-67 seq1567 132 9e-26 >seq1933 Length=42650 Score = 271 bits (300), Expect = 1e-67 Identities = 1021/1585 (64%), Gaps = 65/1585 (4%) Strand=Plus/Plus Query 221116 GTTCACCACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGG 221175 ||| ||||| ||||| || || | |||||| | || |||||| | ||| || ||| | || Sbjct 25626 GTTGACCACCTGGAACTCACCAGCGAGCACACGCCGCTGGTAGATGTTGGACGTGTAGGG 25685 Query 221176 TTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCAC 221235 || | || ||||||||||||||||||||| | || ||| |||||||| || |||| Sbjct 25686 CTCAAAGCACTCGTTGTTGCCCAGGATCTGCGAGGTCGAGGCAGTGGGCATAGGCGCCAT 25745 Query 221236 CAGCAGACTGTTGCGCAGTCCGAATCTA-TTGAT---GGACTTTCTCAGCGTGTTCCAGT 221291 || || |||||||| | || | || ||||| || ||| ||| | || ||||| Sbjct 25746 CAACAAGCTGTTGCGGACGCC-ATGCTGCTTGATCTTGGCCTT---CAGGGCGTCCCAGT 25801 Query 221292 CACAGTGTCCTCCCAGGTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT 221351 | ||| | ||| ||| | | Sbjct 25802 CCCAGAGG--TCCGAGGGCTTGACGTTGTCCCACATGTCGTACTGAAGGATACCC----T 25855 Query 221352 TAGACACCGGACTCCCATCGTACGACTCGTAGGGACCGTACAGTTCGGCCTGGGCGCAAG 221411 ||| || ||| || ||||||||| ||||||||||| || | ||| | |||| | Sbjct 25856 GAGAAACGGGAGATCCCTCGTACGACAAGTAGGGACCGTCCACCTTGGCAATGTCGCACG 25915 Query 221412 ACTGCG-TCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCC 221470 | |||| | ||||| |||||||||||||||||||||||| |||||| || |||| Sbjct 25916 A-TGCGGTGAGGGCGGCGTGGTAGATGGTCTCAAAGATCTGCTTGTTCAGCTGACGGGCC 25974 Query 221471 TCGGGAGAAGTGAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCG 221530 || || || |||||||| || || | ||| | || ||||| ||||| || || Sbjct 25975 TCAGGCGACTCGAAGGGCAGGCGGAGAGCCAAGAAGGCATCAGCCAGACCCTGAACGCCC 26034 Query 221531 ATACCGATGGGCCTGTGTCTCCTGTTG--GAAGCGGCCGCTTCTGGCACGGGATAAAAGT 221588 | ||||| || | ||| | | ||||| | ||| | || |||| || ||||| ||| Sbjct 26035 ACGCCGATAGGGCGGTGGCGCATGTTGCTGTTGCGAGC-CTCCTGG-ACAGGATAGTAGT 26092 Query 221589 TGACGTCGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCT 221648 ||| |||| | ||||| ||||| | || |||| || ||| |||| || Sbjct 26093 TGATATCGACGATCTTGTTCAGGTTGCGGACGACAACTTGGGTGACTTCGTGCAGCAGCT 26152 Query 221649 GGTGATTGAACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAA 221708 || ||| | | ||| | | || || | || | || ||||| | Sbjct 26153 GGAAGTTGTAGC---AGTCGTTCTCATAGTCGACGA-----ACTGAGGC----AGGGCGA 26200 Query 221709 CGCTGGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTAC 221768 | |||||||| || || || |||||||| | | |||| |||||||| || | Sbjct 26201 TGGACGCCAGGTTGCAGACAGCAACCTCGTCAGGGGCAGAGTACTCGATGATCTCCGTGC 26260 Query 221769 AGAGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGT 221828 |||||||| || |||||| ||||||| || || || |||||| ||||| || Sbjct 26261 AGAGGTTGGAGCTGCGGATGGTGCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGTGGT 26320 Query 221829 CCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGA 221888 ||||||| ||||| || || ||| ||||| ||| ||| | || || | ||| | Sbjct 26321 CCTTGTACAGCATGAATGGGTTGCCGGTCTCGGTCTGCGCCTCGAGGATGGCATACCACA 26380 Query 221889 GTTCTCTG-GCGCTCACCGTCCTCTTGACTGCACCCTCGGTCTTTTCATAC--CCGGTAT 221945 | | |||| || ||| ||| ||| | | ||||||| || ||||| | ||| Sbjct 26381 GCT-TCTGTGCCTTCAAGGTCTTCTGGCCGCGACCCTCGCGCT---CATACTTCTCGTAC 26436 Query 221946 AGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACA 222005 | || | | |||| || ||||| ||| ||||||| |||||| | ||| |||| Sbjct 26437 AAGGCCT--CGAACTCCTCGCCGTAGCAGTCGGCCAGGCCGGGACACTCGTTGGGGCACA 26494 Query 222006 TCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCG 222065 | || |||||| ||| | | || | || ||||||||| || |||||||| || | Sbjct 26495 TAAGGGTCCAGTCGCCGTTCTTCTCCACACGCTTCATGAAGAGATCAGGGATCCAGAGGG 26554 Query 222066 CCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAA 222125 || | ||||| || | | || ||| ||| |||| ||| || | ||| || | | Sbjct 26555 CCAGGAAGAGGTCACGAGCACGGACCTCTTCCTTTCCGTGGTTCTTGCGCAGGTCGAGGA 26614 Query 222126 ACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGT 222185 |||| || | |||||||||||||||||||| |||| ||| | || ||||| ||||||| Sbjct 26615 ACTCGAAGACATCAGCGTGCCACGGCTCCAGGTAGATGGCAAAGGCACCGGGGCGCTTGT 26674 Query 222186 TGCCACCCTGATCCACCATCCTCTCCAGAG-CGTTGAAGATGCGAAGGGTCGGTACCAGT 222244 |||||||||| || | | | ||| | |||||||| || || | || | | Sbjct 26675 TGCCACCCTGGTCGA-CGTAGCGAGCAGTGTTGTTGAAGACACGCAGCATGGGGATGATG 26733 Query 222245 CCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTGGCA 222304 || || || ||||||||||| ||| || | || ||| | || | | || Sbjct 26734 CCATTAGACGTGCCGTTGGTGCCGGCAATATAGGAGCCAGTGGCAC---GGATGC-GGTG 26789 Query 222305 GACAT----GCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTC 222360 ||||| || || || ||||| || ||||||||||| ||| ||||||| ||||| Sbjct 26790 GACATTGAGACCAATGCCTCCGGCCATCTTGGAGATCATGGCACAGGTCTTGAGGGTGTC 26849 Query 222361 CATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGA 222420 ||| ||||| || |||||||| | || || || || || || |||| ||| | Sbjct 26850 ATAGATACCCTCGATGCTATCCTCCTTCATGTCCACTAGGAAGCACGATGACAGCTGTGC 26909 Query 222421 TTTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACAT 222480 | | | | |||||| || || || || |||||||| ||| | | || | Sbjct 26910 CTGAGGCGTGCCGGCGTTGAATAGAGTCGGCGAAGCGTGTGTGAAGAACTTGTTGGAGAG 26969 Query 222481 CAGATCGTACGTCTCTACGACTCTGGCGATGTTGTC-CCCGTGAATCTGC--ATGGCGCA 222537 | ||| ||||| | || || |||||||||| ||| || ||| | |||| Sbjct 26970 GTAGTTGTAGGTCTCCAGAACCCTCTCGATGTTGTCTCCCCAGA---TGCCAACGGCGAC 27026 Query 222538 TCTCATGTACATGTACTGGGGCCTCTCCACAGGAC----CCTTGGAGCTGGAGAGCAGGT 222593 | ||| ||||| ||| |||| ||| || ||| || | ||||| ||| || | Sbjct 27027 ACGCATCAGCATGTGCTGTGGCCGCTCGAC--GACCTTGCCGTTGAGCT--TGAGGAGAT 27082 Query 222594 ACGATTTTTCCAGAGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTCTCTGCCGTGAACCA 222653 |||| ||||| |||||||| || ||||| | | | |||||| | | | || | Sbjct 27083 ACGAGCGCTCCAGGGTCTTGAAGCCGAAGTATTGGTATTGGTAGTCTCGGTCATAGACGA 27142 Query 222654 CGGCGGCGTCCAGCTCCGACTTGTG 222678 ||| | ||| | |||| |||||| Sbjct 27143 TGGCCGAGTCAAACTCCTCCTTGTG 27167 >seq1567 Length=91444 Score = 132 bits (146), Expect = 9e-26 Identities = 297/448 (66%), Gaps = 9/448 (2%) Strand=Plus/Plus Query 25877 AGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCA 25936 |||| || || || || ||||| || ||||| ||||| |||||||| | || || ||| Sbjct 45153 AGCGCCTTGTCGCATTCGCTGCCGTCGAGGGTATCTTCTTCAGCGGCGCCTTCGCCTCCA 45212 Query 25937 TCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCA 25996 |||||||||||||| || || ||||| || ||| ||| ||||||||||| ||| Sbjct 45213 TCTTCTGGCTCAAGAAGCGTGGCCTGATGCCTGGTCTGACCTTCTCCAACGAGCTGATCT 45272 Query 25997 GCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCC 26056 | ||||||||||| || | || || ||||||||||| | | | |||| || | Sbjct 45273 CTCGTGACGAGGGTCTACATACTGACTTCGCCTGCCTGCTGTTCTC---CCACCTGAACA 45329 Query 26057 ACAAACCTTCTCAAG-AGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAG 26115 || || |||| || ||| | |||||||| || || || | || |||||| Sbjct 45330 ACCGGCC-CAGCAAGCAGCGCGTAGAGGCTATCATCACGGATGCCGTTGTCATTGAGAAG 45388 Query 26116 GAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGC 26175 ||||| | | ||||||||| || || |||| Sbjct 45389 GAGTTCCTGACTGAGGCCCTGCCCTGTGGCCTGCTCGGCATGAACGCCACCCTGATGAAG 45448 Query 26176 CAATACATTGAGTATGTGGCCGACCATCTGCT-GT-GCCAGCTGGGACTCGCCAGACTCT 26233 || |||||||||| || ||||||| ||| || || ||| || || || | ||| Sbjct 45449 CAGTACATTGAGTTCGTCGCCGACCGTCTCCTCGTCGCC--CTCGGCAACGAGAAGGTCT 45506 Query 26234 ACAGTACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACT 26293 ||| | | ||||| |||||||| ||||| ||||| || | | || |||||||||| Sbjct 45507 ACAAGTCTTCCAACCCCTTCGACTTCATGGAGAACATCTCCCTTGGCGGCAAGACCAACT 45566 Query 26294 TCTTTGAAAAGAGGGTCGGCGACTATCA 26321 |||| || ||| | || || ||||| || Sbjct 45567 TCTTCGAGAAGCGTGTTGGTGACTACCA 45594 Score = 95.1 bits (104), Expect = 2e-14 Identities = 166/235 (71%), Gaps = 9/235 (4%) Strand=Plus/Plus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAAC-TCAAACTGGACCGCCGAAGAGATTGATCT 25535 || ||| |||||||||||||| | | | | || |||||| || || ||||||||||| Sbjct 44688 ATCTGGCAGATGTACAAGAAG-CACGAGGCATCCTTCTGGACTGCTGAGGAGATTGATCT 44746 Query 25536 GGCCAAGGACATGGACGGCTGGTA----CGCTCTATCCAAAGACGAGCAGCATTTTCTCA 25591 | |||||||| || ||| |||| | ||| || |||| |||||| | | || || Sbjct 44747 GTCCAAGGACCTGCACGACTGGAACAACCGC-CTGACCAATGACGAGAAATACTTCATCT 44805 Query 25592 AGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGA 25651 || | | || |||||||| ||||| || || || || |||||||| || |||| Sbjct 44806 CCCACATCCTCGCCTTCTTTGCCGCCTCGGACGGCATTGTCAACGAGAACTTGATCGAGC 44865 Query 25652 GATTCACCAGGGAAGTGCAG-TACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGA 25705 | |||| | || || ||| | | | |||||| || |||||||| ||||||| Sbjct 44866 GCTTCAGCGCTGAGGTTCAGATTCCT-GAGGCCCGTTGCTTCTACGGCTTCCAGA 44919 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928817886721920