Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryphonectria_20radicalis_20[genbank_20GCA_5F002179595.1_202017-06- 08] 2,318 sequences; 41,022,676 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq1933 226 3e-54 seq1057 96.9 4e-15 >seq1933 Length=42650 Score = 226 bits (250), Expect = 3e-54 Identities = 1128/1772 (64%), Gaps = 32/1772 (2%) Strand=Plus/Minus Query 75212 CCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGTC 75271 |||||| ||||| | ||||| ||||| | |||||| || || |||| || || Sbjct 27047 CCACAGCACATGCTGATGCGTGTCGCCGTTGGCATCTGGGGAGACAACATCGAGAGGGTT 26988 Query 75272 TTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCTT 75330 ||||||| ||| || | | ||| | | || | |||| ||||| | || || || || Sbjct 26987 CTGGAGACCTACAACTACCTCTCCAACAAGT-TCTTCACACACGCTTCGCCGACTCTATT 26929 Query 75331 CAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 75390 ||| || || || || | ||| |||| |||||||| | | || |||||||| Sbjct 26928 CAACGCCGGCACGCCTCAGGCACAGCTGTCATCGTGCTTCCTAGTGGACATGAAGGAGGA 26869 Query 75391 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 75450 ||| | |||||||||| || || | | ||||| ||||| ||| ||| || Sbjct 26868 TAGCATCGAGGGTATCTATGACACCCTCAAGACCTGTGCCATGATCTCCAAGATGGCCGG 26809 Query 75451 GGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAA 75510 || ||||| | | |||| | | |||| | || |||| || || || Sbjct 26808 AGGCATTGGTCTCAATGTCCACCGCATCCGTGCCACTGGCTCCTATATTGCCGGCACCAA 26749 Query 75511 TGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGT 75570 || || |||| || || || ||||| || || || ||| ||| || ||||| || Sbjct 26748 CGGCACGTCTAATGGCATCATCCCCATGCTGCGTGTCTTCAACAACACTGCTCGCTACGT 26689 Query 75571 AAATCAAGCGGGGCGTC----GCAAGGGGTCCATCGCGGTCTACTTGGAACCATGGCATG 75626 | || | | ||| | || || || | || ||||| |||| || ||||| | Sbjct 26688 CGACCAGG-GTGGCAACAAGCGCCCCGGTGCCTTTGCCATCTACCTGGAGCCGTGGCACG 26630 Query 75627 CCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCGGTG-T 75685 | ||| || | |||||||| || | || ||||| || | ||||||| || ||| | Sbjct 26629 CTGATGTCTTCGAGTTCCTCGACCTGCGCAAGAACCACGGAAAGGAAGAGG-TCCGTGCT 26571 Query 75686 AGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAGGGT 75745 | || ||||| |||| ||||| || || || ||||||||||| || ||| || Sbjct 26570 CGTGACCTCTTCCTGGCCCTCTGGATCCCTGATCTCTTCATGAAGCGTGTGGAGAAGAAC 26511 Query 75746 GGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACGCGGTGGGTGAG 75805 || | ||| | ||| | || || || || || || || ||||| || ||| Sbjct 26510 GGCGACTGGACCCTTATGTGCCCCAACGAGTGTCCCGGCCTGGCCGACTGCTACGGCGAG 26451 Query 75806 GAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGCCAATGCGACTGTACCA 75865 ||||| || ||| | ||| |||||||| |||||| | | | | ||| | | Sbjct 26450 GAGTTCGAGGCCTTGTACGAGAAGTATGAGCGCGAGGGTCGCGGCCAGAAGACCTTGA-A 26392 Query 75866 GCCGCCGATGTT-TGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCATATAT 75924 | | | || | | ||| | || || ||| | | ||||| ||||| || | |||| || Sbjct 26391 GGCACAGAAGCTGTGGTATGCCATCCTCGAGGCGCAGACCGAGACCGGCAACCCATTCAT 26332 Query 75925 GCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGAG 75984 ||| |||||||| ||| ||||| ||||| ||||| |||| || ||| || Sbjct 26331 GCTGTACAAGGACCACGCCAACCGCAAGAGCAACCAGAAGAACCTGGGCACCATCCGCAG 26272 Query 75985 CTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGTTTGCAA 76044 ||| || || |||||||| || | |||||| | | || ||| ||||| ||||| Sbjct 26271 CTCCAACCTCTGCACGGAGATCATCGAGTACTCTGCCCCTGACGAGGTTGCTGTCTGCAA 26212 Query 76045 TTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAGACTCGCACTTTTG--ATTAT 76102 |||| || |||||||| || ||| ||| | | |||| || ||| | | | Sbjct 26211 CCTGGCGTCCATCGCCCTGCCTCAGTTCGTCGACTATGAGAA-CG-ACTGCTACAACTTC 26154 Query 76103 GAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGAGTCATTGACAGA 76162 | || || ||| |||| | |||| | || || ||| || | || | Sbjct 26153 CAGCTGCTGCACGAAGTCACCCAAGTTGTCGTCCGCAACCTGAACAAGATCGTCGATATC 26094 Query 76163 AATTTTTATCCCGTTGAGACTGCGCGAAAGTCTAATATGCGACACAGACCTATTGGTTTG 76222 || | ||||| || || || || || || ||||| ||| | ||||| || || Sbjct 26093 AACTACTATCCTGTCCAGGAGGCTCGCAACAGCAACATGCGCCACCGCCCTATCGGCGTG 26034 Query 76223 GGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGCTACGCATTTGATTCAGATGAA 76282 || ||||| ||||| || |||| || | |||| | || || || ||| Sbjct 26033 GGCGTTCAGGGTCTGGCTGATGCCTTCTTGGCTCTCCGCCTGCCCTTCGAGTCGCCTGAG 25974 Query 76283 GCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACGCATCCCTGGAGGCGAGT 76342 ||| || |||| | |||||||| ||||| || ||||| |||| || Sbjct 25973 GCCCGTCAGCTGAACAAGCAGATCTTTGAGACCATCTACCACGCCGCCCTCACCGCATCG 25914 Query 76343 TGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGAGGGTTCTCCCGCGTCCCAA 76402 || || | || | | | ||| |||| | | | ||||| ||||||| || || Sbjct 25913 TGCGACATTGCCAAGGTGGACGGTCCCTACTTGTCGTACGAGGGATCTCCCGTTTCTCAG 25854 Query 76403 GGGGTGCTTCAGTTTGATATGTGGGA--AGGTGAAACCAA-GCTCAACTACGACTGGGAT 76459 || | ||||||| || |||||||| | || || || | | || |||||||| Sbjct 25853 GGTATCCTTCAGTACGACATGTGGGACAACGTCAAGCCCTCGGACCTCTGGGACTGGGAC 25794 Query 76460 GTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCACCAATG 76519 | || |||| |||||| || | || | || ||||| | |||||||| || ||| Sbjct 25793 GCCCTGAAGGCCAAGATCAAGCAGCATGGCGTCCGCAACAGCTTGTTGATGGCGCCTATG 25734 Query 76520 CCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCATACACAACA 76579 || || ||||| ||| | || ||| |||| || || || |||||||| || ||||| | Sbjct 25733 CCCACTGCCTCGACCTCGCAGATCCTGGGCAACAACGAGTGCTTTGAGCCCTACACGTCC 25674 Query 76580 AACATCTACCTGAGAAGAACCCTCGCAGGTGAGTTTGTCATTGTCAACAAGCACCTCGTC 76639 |||||||||| | | | ||||| |||||||| | |||||| || || Sbjct 25673 AACATCTACCAGCGGCGTGTGCTCGCTGGTGAGTTCCAGGTGGTCAACCCATGGCTGCTC 25614 Query 76640 AATGACCTCAAGAAGATTGGTCTCTGGTCCAAGGATATGAAGGATCTCATGGTGAAAGCG 76699 || ||||| | || |||||| |||||| |||| ||||| | | ||| | | | Sbjct 25613 AAGGACCTTGTGCAGTGTGGTCTGTGGTCCGAGGACCTGAAGAACCGCATCATCGCCGAG 25554 Query 76700 GGTGGTTCCATTCAAAATAT-CTCAGATATCCCAGATGATATCAAGAATCTCTACCGCAC 76758 | |||||| || || || || | ||| ||||| |||||||||||| |||||| || Sbjct 25553 GATGGTTCTATCCAGAACATTCGCAGC-ATCCCGGATGATATCAAGGCCCTCTACAAGAC 25495 Query 76759 AGTGTGGGAAATCAAGATGAAAGATGTCATTGACATGGCCGCAGATCGTGGTCGC-TTCA 76817 || ||||| ||| | || || | | |||||||| || ||||| ||| |||| Sbjct 25494 CGTCTGGGAGATCTCGCAGAGGACCATCGTCCAGATGGCCGCCGACCGTGG-CGCTTTCA 25436 Query 76818 TTGATCAAAGTCAAAGT--ATGAATCTATTCATG---GAAAGTCCAACGATGTCCAAGCT 76872 | || | |||| ||| |||| | |||| ||| || | ||| |||| | Sbjct 25435 TCGACC--AGTCTCAGTCCCTGAACATCCACATGCGTGAA---CCTTCTATGGGCAAGAT 25381 Query 76873 CTCTTCTATGCATATGTACGCGTGGAAACAGGGGCTCAAAACCGGAATGTACTATCTCCG 76932 | | ||||| | || ||||| | ||| ||||| || || |||||||| ||||| Sbjct 25380 CACGAGCATGCACTTCACCGGATGGAAGCTGGGTCTCAAGACTGGCATGTACTACCTCCG 25321 Query 76933 ATCAAAGGCGAAAGCCCGACCAATTCAGTTCA 76964 | ||||| || || |||||||||| Sbjct 25320 CACCCAGGCGGCGGCAGCCCCGATTCAGTTCA 25289 >seq1057 Length=53502 Score = 96.9 bits (106), Expect = 4e-15 Identities = 159/226 (70%), Gaps = 4/226 (2%) Strand=Plus/Minus Query 175276 GGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTC 175335 || |||||||| || || |||||| | | | || ||| ||||| || ||||| || Sbjct 21826 GGCGCCAAGATTCCGCGTGGCGCCATCTTGTCTGGCCCGCCCGGTACTGGTAAGACGCTG 21767 Query 175336 CTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTCATCCAGTGCTCTGCCGCAA-- 175393 |||||| || | ||| ||||| || || || ||| || |||| || || || Sbjct 21766 CTCGCCAAGGCGACCGCCGGTGAGTCGGGCGTGCCGTTCTTC-AGTG-TCAGCGGCTCCG 21709 Query 175394 ACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCG 175453 | || || ||||||||||| ||||| |||||| || || ||||| ||||||| | Sbjct 21708 AATTCGTCGAGATGTTTGTCGGTGTCGGTGCCTCGAGAGTGCGCGACCTCTTTGCGCAGG 21649 Query 175454 CCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGC 175499 |||| | || || || || ||||||||||| ||||||||||| Sbjct 21648 CCCGGAAGAACGCGCCCTGCATCGTCTTCATTGACGAGATTGATGC 21603 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596552314395840