Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryphonectria_20radicalis_20[genbank_20GCA_5F002179595.1_202017-06-
08] 2,318 sequences; 41,022,676 total letters
Query= NC_020864.1
Length=205622
Score E
Sequences producing significant alignments: (Bits) Value
seq2035 289 4e-73
seq1543 188 9e-43
seq757 176 6e-39
seq1759 152 7e-32
seq1653 120 4e-22
seq2031 118 1e-21
seq1057 98.7 1e-15
>seq2035
Length=18481
Score = 289 bits (320), Expect = 4e-73
Identities = 463/658 (70%), Gaps = 5/658 (1%)
Strand=Plus/Minus
Query 195374 AATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACAGATAATGAACGTCTC 195433
|||||||| || |||||||| || ||||| | ||||| || || |||| || ||||||
Sbjct 14724 AATGACCAGGGCAACCGTACCACCCCATCATTTGTTGCTTTCACCGATACAGAGCGTCTC 14665
Query 195434 GTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAATACTGTCTTTGACGCG 195493
|||| |||||||| || || ||| || |||||||| ||| || ||||| ||||||
Sbjct 14664 ATTGGTGATGCCGCCAAGAACCAGGTCGCCATGAACCCCCACAACACCGTCTTCGACGCG 14605
Query 195494 AAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGACGATATAAAGGACTGG 195553
||||| | |||||||||||||| ||| | ||||| | ||| || ||| |||
Sbjct 14604 AAGCGGTTGATTGGTCGCAAGTTCCAGGACTCTGAGGTCCAGGCCGACATGAAGCACTTC 14545
Query 195554 TCTTATGAAGTTGTTCCCGGTGTGGCTGATAAGCCTATGATTAATGTTGAATTTCACGGT 195613
| | | ||| | || | | ||| | ||||| | || | ||||| || | ||
Sbjct 14544 CCCT-TCAAGGTCATCGAGAAG-GGCAG-CAAGCCCGTCATCGAGGTTGAGTTCAAGGGC 14488
Query 195614 GAGAAGAAACAATTTGCTCCCGAAGAAATTTCGTCTATGGTGTTGATTAAGATGAAGGAG 195673
|||| || || || ||||||| || || || || ||||| | | |||||| |||
Sbjct 14487 GAGACCAAGCACTTCACTCCCGAGGAGATCTCCTCCATGGTCCTCACCAAGATGCGCGAG 14428
Query 195674 ACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTGACTGTACCTGCTTAC 195733
||||| || | | | |||| || || || | || || |||||||| ||||| |||
Sbjct 14427 ACTGCTGAGGCCTACCTGGGCGGCACCGTCAACAACGCTGTCGTGACTGTCCCTGCCTAC 14368
Query 195734 TTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCGGGTCTAAACTGT 195793
|||| ||| || || || ||||| || ||||| |||| | ||||| || || ||| |
Sbjct 14367 TTCAATGACTCTCAGCGCCAGGCCACCAAGGATGCTGGTCTCATTGCCGGCCTGAACGTT 14308
Query 195794 CTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCTGGACAAGAACAAG 195853
|| | || ||||| || || || || ||||| || || || ||||| ||||||||
Sbjct 14307 CTGCGTATCATCAACGAGCCCACCGCTGCTGCCATCGCCTACGGTCTTGACAAGAAGGTC 14248
Query 195854 GACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGTACGTTTGATGTCTCACTT 195913
|| | || || || | ||||| || || || |||||||| || |||||||| ||
Sbjct 14247 GAGGGCGAGCGCAACGTGCTCATCTTCGACCTGGGCGGTGGTACCTTCGATGTCTCCCTG 14188
Query 195914 CTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGGTGATACTCATCTAGGT 195973
|||| || || | ||||| ||||| || ||| ||||||||||||| ||||| || |||
Sbjct 14187 CTCACCATCGAGGAGGGTATCTTCGAGGTCAAGTCTACTGCTGGTGACACTCACCTGGGT 14128
Query 195974 GGTGAAGATTTCGATGCACGTCTTCTCCGTCA-TTTGTCTGATGAGTTCCGTCGAAAG 196030
||||| || ||||| ||||| || || ||||||| | |||||| ||||||
Sbjct 14127 GGTGAGGACTTCGACAACCGTCTGGTCAACCACTTTGTCTCA-GAGTTCAAGCGAAAG 14071
>seq1543
Length=161075
Score = 188 bits (208), Expect = 9e-43
Identities = 179/229 (78%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 171860 GTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGT 171919
||||||| ||||| || || || || || || || || |||||||||||||| ||||| |
Sbjct 71942 GTATGCAGATCTTCGTCAAGACGCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCCT 71883
Query 171920 CAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATC 171979
| ||||| ||||| ||| | || ||||||||||| || ||||| || || || || || |
Sbjct 71882 CCGACACCATCGACAACGTGAAGGCCAAGATTCAGGACAAGGAGGGTATCCCCCCAGACC 71823
Query 171980 AGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACA 172039
|||| || || || |||||||| || ||||| || || || ||||||||| | || ||||
Sbjct 71822 AGCAGCGCCTCATCTTTGCTGGAAAGCAGCTCGAGGACGGCCGTACCCTCTCCGACTACA 71763
Query 172040 ACGTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGG 172088
|| | || |||||||||||||| ||||| || || | || || |||||
Sbjct 71762 ACATCCAGAAGGAGTCTACTCTCCACCTCGTCCTTCGCCTCCGCGGTGG 71714
Score = 163 bits (180), Expect = 4e-35
Identities = 173/228 (76%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921
||||| ||||| || || ||||| || || || || ||||| || ||||| ||||| ||
Sbjct 72168 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACTCTTGAGGTCGAGTCCTCC 72109
Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981
||||| ||||| ||| | || ||||||||||| || ||||| ||||| || || || |||
Sbjct 72108 GACACCATCGACAACGTGAAGGCCAAGATTCAGGACAAGGAGGGCATCCCTCCTGACCAG 72049
Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041
|| || || ||||| || || || ||||| || || || || |||||| | || ||||||
Sbjct 72048 CAGCGCCTGATTTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTACAAC 71989
Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089
| || |||||||| || || ||||| || || | || || || |||
Sbjct 71988 ATCCAGAAGGAGTCCACCCTTCACCTGGTCCTCCGTCTGCGTGGCGGT 71941
Score = 161 bits (178), Expect = 1e-34
Identities = 172/227 (76%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921
||||| ||||| || || ||||| || || || || ||||| |||||||| ||||| ||
Sbjct 71712 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACTCTCGAGGTCGAGTCTTCG 71653
Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981
|| ||||| || ||| | || ||||||||||| || ||||| || || ||||| || |||
Sbjct 71652 GATACAATTGACAACGTGAAGGCCAAGATTCAGGACAAGGAGGGTATCCCACCAGACCAG 71593
Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041
|| || || || || || || || ||||| || ||||| || || ||| | || ||||||
Sbjct 71592 CAGCGTCTCATCTTCGCGGGCAAGCAGCTGGAGGATGGCCGGACACTCTCAGACTACAAC 71533
Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGG 172088
|||| |||||||| || || ||| | || || | || || |||||
Sbjct 71532 ATTCAGAAGGAGTCGACGCTGCACTTGGTGCTGCGTCTGCGTGGTGG 71486
>seq757
Length=325751
Score = 176 bits (194), Expect = 6e-39
Identities = 177/230 (77%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921
||||| ||||| || || ||||| || || || ||||||||||| ||||| ||||| ||
Sbjct 29834 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCATCC 29893
Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981
||||| ||||| || |||| ||||| || || || ||||| ||||| || || || |||
Sbjct 29894 GACACCATCGACAATGTCAAGGCCAAAATCCAGGACAAGGAGGGCATCCCCCCAGACCAG 29953
Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041
|| || || || |||||||| || ||||| || || || || ||||| | || ||||||
Sbjct 29954 CAGCGCCTGATCTTTGCTGGCAAGCAGCTCGAGGACGGCCGCACCCTGTCCGACTACAAC 30013
Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGTGC 172091
|||| |||||||| || || ||||| || || | || || ||||||||
Sbjct 30014 ATTCAGAAGGAGTCCACCCTGCACCTGGTCCTGCGCCTGCGTGGTGGTGC 30063
>seq1759
Length=81252
Score = 152 bits (168), Expect = 7e-32
Identities = 143/182 (79%), Gaps = 0/182 (0%)
Strand=Plus/Minus
Query 171870 CTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAAT 171929
||| ||||| ||||| || || || ||||||||||||||||| ||||| || ||||| ||
Sbjct 67026 CTTCGTGAAGACCCTGACGGGCAAGACTATCACCCTCGAGGTGGAGTCTTCCGACACCAT 66967
Query 171930 CGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACT 171989
||| ||| | || |||||||| || || ||||| |||||||| || || ||||| ||| |
Sbjct 66966 CGACAACGTTAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCTGACCAGCAGCGATT 66907
Query 171990 TATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAACGTTCAAAA 172049
|| || || || || |||||||| ||||| || || ||| | || |||||| | || ||
Sbjct 66906 GATCTTCGCCGGCAAGCAGCTTGAGGATGGCCGCACTCTCTCCGACTACAACATCCAGAA 66847
Query 172050 GG 172051
||
Sbjct 66846 GG 66845
>seq1653
Length=80143
Score = 120 bits (132), Expect = 4e-22
Identities = 240/356 (67%), Gaps = 0/356 (0%)
Strand=Plus/Plus
Query 195632 CCCGAAGAAATTTCGTCTATGGTGTTGATTAAGATGAAGGAGACTGCGGAATCTTTCATG 195691
||||| || || ||| | ||| | || |||||||||||| || || | | | |
Sbjct 53028 CCCGAGGAGATCTCGGCCATGATTCTGGGCAAGATGAAGGAGGTCGCCGAGACCTACCTC 53087
Query 195692 GGTAAAACTGTGAAAGATGCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGA 195751
|| || | || | | || || || ||||| || || ||||||| || || ||
Sbjct 53088 GGAAAGAAGGTCACCCACGCCGTCGTCACTGTCCCCGCCTACTTCAACGACAACCAGCGT 53147
Query 195752 CAGGCGACAAAGGACGCTGCTGCTATTGCGGGTCTAAACTGTCTTAGAATTATCAATGAA 195811
||||| || ||||| || | ||| || ||||| ||| || | || |||| ||
Sbjct 53148 CAGGCTACCAAGGATGCCGGCATTATCGCCGGTCTCAACGTCCTCCGTATCGTCAACGAG 53207
Query 195812 CCAACAGCGGCTGCAATTGCTTATGGTCTGGACAAGAACAAGGACGAAGATAAAAATGTA 195871
|| || || || || || || || ||||||||||||| | | |||| || | |
Sbjct 53208 CCCACGGCCGCCGCCATCGCGTACGGTCTGGACAAGACCGACGACGGTGAGCGTCAGATC 53267
Query 195872 TTGATCTTTGATCTCGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGT 195931
| ||| ||||| ||||||||||| || |||||||| || || || || |||
Sbjct 53268 ATCGTCTACGATCTTGGTGGTGGTACTTTCGATGTCTCTCTCCTGTCGATCGACCAGGGT 53327
Query 195932 ATATTCGAAGTAAAGGCTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGA 195987
| ||||| || ||||||||| |||||||| || || |||||||| ||||||||
Sbjct 53328 GTTTTCGAGGTCCTGGCTACTGCCGGTGATACCCACCTCGGTGGTGAGGATTTCGA 53383
>seq2031
Length=292583
Score = 118 bits (130), Expect = 1e-21
Identities = 461/720 (64%), Gaps = 11/720 (2%)
Strand=Plus/Minus
Query 195719 ACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATT 195778
||||| || || ||||||| || || || ||||| || ||||| || | | ||
Sbjct 104609 ACTGTCCCCGCCTACTTCAACGACAACCAGCGTCAGGCCACCAAGGATGCCGGATCCATC 104550
Query 195779 GCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGT 195838
| ||||| ||| || | || ||||| || || || || ||||| ||||| || ||
Sbjct 104549 TCCGGTCTTAACGTCCTCCGTATCATCAACGAGCCCACCGCTGCTGCCATTGCCTACGGC 104490
Query 195839 CTGGACAAGAACAAGG---ACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGT 195895
|| | | |||||| || | || || || |||||| ||||| ||||||||
Sbjct 104489 CTTGGCTCCAACAAGTCCAACAAGGAGCGCAACGTCCTGATCTACGATCTGGGTGGTGGC 104430
Query 195896 ACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCT 195955
|| || |||||||| || || || || | ||||| | ||| || |||||||||||
Sbjct 104429 ACCTTCGATGTCTCCCTGCTTAACATCCAGGGTGGCGTCTTCACCGTCAAGGCTACTGCC 104370
Query 195956 GGTGATACTCATCTAGGTGGTGAAGATTTCGATGCACGTCTTCTCCGTCATTTGTCTGAT 196015
||||| || || || ||||| | || ||||| | || || || | |
Sbjct 104369 GGTGACACCCACCTGGGTGGACAGGACTTCGACACCAACCTGCTGGACCACTGCAAGAAG 104310
Query 196016 GAGTTCCGTCGAAAGAATAAGAAAGATATTTCTGGAAATCCTAGGGCTCTTCGTCGGCTT 196075
|||||| || ||| ||||| || | || || || | | || || ||||| ||
Sbjct 104309 GAGTTCACCCGCAAGTTCAAGAAGGACCTGTCCGGCGATGCCCGTGCCCTCCGTCGTCTC 104250
Query 196076 AGGACTGCATGTGAACGTGCCAAACGAACTCTCTCTTCTACG--GCTCAAACAATGGTTG 196133
| ||||| || || |||||||| || || || || | || || || | | |||
Sbjct 104249 CGCACTGCTTGCGAGCGTGCCAAGCGTACCCTGTC--CAGCGGTGCCCAGGCCACCATTG 104192
Query 196134 AGATTGATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTACCCGTGCACGTTTTG 196193
|||| || || | || ||||| || ||| | | || |||||||| ||||| |
Sbjct 104191 AGATCGACTCCCTCTTCGACGGCGAGGATTTCAACATGCAGATCACCCGTGCCCGTTTCG 104132
Query 196194 AAGAGTTAAACTCTGATTTGTTTA--GGAAGTGTATGGAACCTGTTGAACAAGTACTTCG 196251
| || | ||| | | || | || | |||| || || || || ||
Sbjct 104131 AGGACCTGAACGCCAAGGCTTTCACTGGCA--CCCTGGACCCCGTGACCCAGGTTCTCAA 104074
Query 196252 TGACGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTGGGAGGATCAACCCG 196311
|| || || || || ||||| || || || || |||||||| || || || |||||
Sbjct 104073 GGATGCCAACATTGAGAAGTCCGGCGTCGACGAGATCGTCCTTGTCGGCGGCTCCACCCG 104014
Query 196312 TATTCCGAAGATTCAACAGATGCTTTCTAGCTTCTTCAATAATAAAGATTTAAACAAAAC 196371
||| || ||||| || || | || || |||| | || | | | || |
Sbjct 104013 TATCCCCAAGATCCAGAAGCTCCTGAGCGACTACTTCGACGGCAAGAAGCTCGAGAAGTC 103954
Query 196372 GATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATTCTCTCAGG 196431
|||||||| ||||| || ||||| || ||||| ||||| ||||| | ||| ||||| ||
Sbjct 103953 CATCAACCCCGATGAGGCCGTTGCCTACGGTGCTGCCGTCCAGGCCGGTATCCTCTCTGG 103894
>seq1057
Length=53502
Score = 98.7 bits (108), Expect = 1e-15
Identities = 197/286 (69%), Gaps = 16/286 (6%)
Strand=Plus/Minus
Query 198579 CCGGGTACTGGTAAAACCCTTCTAGCTCGTGCTATCGCGGGTGAATCGAGTGTCCCCTTT 198638
|| ||||||||||| || || || || || | ||| ||||| ||| | || || ||
Sbjct 21787 CCCGGTACTGGTAAGACGCTGCTCGCCAAGGCGACCGCCGGTGAGTCGGGCGT-GCCGTT 21729
Query 198639 CTTCAGTGCTCCGCGG---CGAGTTTCATCGAGATGTTCGTTGGTGTTGGTGCTAAGCGC 198695
|||||||| || |||| ||| ||| |||||||||| || ||||| ||||| | |
Sbjct 21728 CTTCAGTG-TCAGCGGCTCCGA-ATTCGTCGAGATGTTTGTCGGTGTCGGTGCCTCGAGA 21671
Query 198696 GTCCGGGAACTCTTTGAGCAAGCACGTGAAAATCAACCATGTATCATCTTCATTGATGAG 198755
|| || || ||||||| ||| || || | || || || ||| |||||||||| |||
Sbjct 21670 GTGCGCGACCTCTTTGCGCAGGCCCGGAAGAACGCGCCCTGCATCGTCTTCATTGACGAG 21611
Query 198756 ATTGACGCTGTTGGTAAGAAGCG---TGGTGGAACTACTACACCT-----GGTAATGATG 198807
||||| || |||| | || | ||||| || | | | || || || |
Sbjct 21610 ATTGATGCCATTGGCCGGTCCCGATCCGATGGAA--ACAAGAATTTTGGCGGAAACGAGG 21553
Query 198808 AGCGTGAGCAGACGATTAACCAGCTTCTCACTGAGATGGATGGTTT 198853
|||||||| ||| | |||||| | ||||| |||||||| || ||
Sbjct 21552 AGCGTGAGGCGACCCTGAACCAGATCCTCACGGAGATGGACGGCTT 21507
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 657843338436960
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