Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryphonectria_20radicalis_20[genbank_20GCA_5F002179595.1_202017-06- 08] 2,318 sequences; 41,022,676 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq2035 289 4e-73 seq1543 188 9e-43 seq757 176 6e-39 seq1759 152 7e-32 seq1653 120 4e-22 seq2031 118 1e-21 seq1057 98.7 1e-15 >seq2035 Length=18481 Score = 289 bits (320), Expect = 4e-73 Identities = 463/658 (70%), Gaps = 5/658 (1%) Strand=Plus/Minus Query 195374 AATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACAGATAATGAACGTCTC 195433 |||||||| || |||||||| || ||||| | ||||| || || |||| || |||||| Sbjct 14724 AATGACCAGGGCAACCGTACCACCCCATCATTTGTTGCTTTCACCGATACAGAGCGTCTC 14665 Query 195434 GTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAATACTGTCTTTGACGCG 195493 |||| |||||||| || || ||| || |||||||| ||| || ||||| |||||| Sbjct 14664 ATTGGTGATGCCGCCAAGAACCAGGTCGCCATGAACCCCCACAACACCGTCTTCGACGCG 14605 Query 195494 AAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGACGATATAAAGGACTGG 195553 ||||| | |||||||||||||| ||| | ||||| | ||| || ||| ||| Sbjct 14604 AAGCGGTTGATTGGTCGCAAGTTCCAGGACTCTGAGGTCCAGGCCGACATGAAGCACTTC 14545 Query 195554 TCTTATGAAGTTGTTCCCGGTGTGGCTGATAAGCCTATGATTAATGTTGAATTTCACGGT 195613 | | | ||| | || | | ||| | ||||| | || | ||||| || | || Sbjct 14544 CCCT-TCAAGGTCATCGAGAAG-GGCAG-CAAGCCCGTCATCGAGGTTGAGTTCAAGGGC 14488 Query 195614 GAGAAGAAACAATTTGCTCCCGAAGAAATTTCGTCTATGGTGTTGATTAAGATGAAGGAG 195673 |||| || || || ||||||| || || || || ||||| | | |||||| ||| Sbjct 14487 GAGACCAAGCACTTCACTCCCGAGGAGATCTCCTCCATGGTCCTCACCAAGATGCGCGAG 14428 Query 195674 ACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTGACTGTACCTGCTTAC 195733 ||||| || | | | |||| || || || | || || |||||||| ||||| ||| Sbjct 14427 ACTGCTGAGGCCTACCTGGGCGGCACCGTCAACAACGCTGTCGTGACTGTCCCTGCCTAC 14368 Query 195734 TTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCGGGTCTAAACTGT 195793 |||| ||| || || || ||||| || ||||| |||| | ||||| || || ||| | Sbjct 14367 TTCAATGACTCTCAGCGCCAGGCCACCAAGGATGCTGGTCTCATTGCCGGCCTGAACGTT 14308 Query 195794 CTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCTGGACAAGAACAAG 195853 || | || ||||| || || || || ||||| || || || ||||| |||||||| Sbjct 14307 CTGCGTATCATCAACGAGCCCACCGCTGCTGCCATCGCCTACGGTCTTGACAAGAAGGTC 14248 Query 195854 GACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGTACGTTTGATGTCTCACTT 195913 || | || || || | ||||| || || || |||||||| || |||||||| || Sbjct 14247 GAGGGCGAGCGCAACGTGCTCATCTTCGACCTGGGCGGTGGTACCTTCGATGTCTCCCTG 14188 Query 195914 CTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGGTGATACTCATCTAGGT 195973 |||| || || | ||||| ||||| || ||| ||||||||||||| ||||| || ||| Sbjct 14187 CTCACCATCGAGGAGGGTATCTTCGAGGTCAAGTCTACTGCTGGTGACACTCACCTGGGT 14128 Query 195974 GGTGAAGATTTCGATGCACGTCTTCTCCGTCA-TTTGTCTGATGAGTTCCGTCGAAAG 196030 ||||| || ||||| ||||| || || ||||||| | |||||| |||||| Sbjct 14127 GGTGAGGACTTCGACAACCGTCTGGTCAACCACTTTGTCTCA-GAGTTCAAGCGAAAG 14071 >seq1543 Length=161075 Score = 188 bits (208), Expect = 9e-43 Identities = 179/229 (78%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 171860 GTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGT 171919 ||||||| ||||| || || || || || || || || |||||||||||||| ||||| | Sbjct 71942 GTATGCAGATCTTCGTCAAGACGCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCCT 71883 Query 171920 CAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATC 171979 | ||||| ||||| ||| | || ||||||||||| || ||||| || || || || || | Sbjct 71882 CCGACACCATCGACAACGTGAAGGCCAAGATTCAGGACAAGGAGGGTATCCCCCCAGACC 71823 Query 171980 AGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACA 172039 |||| || || || |||||||| || ||||| || || || ||||||||| | || |||| Sbjct 71822 AGCAGCGCCTCATCTTTGCTGGAAAGCAGCTCGAGGACGGCCGTACCCTCTCCGACTACA 71763 Query 172040 ACGTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGG 172088 || | || |||||||||||||| ||||| || || | || || ||||| Sbjct 71762 ACATCCAGAAGGAGTCTACTCTCCACCTCGTCCTTCGCCTCCGCGGTGG 71714 Score = 163 bits (180), Expect = 4e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||| || || ||||| || || || || ||||| || ||||| ||||| || Sbjct 72168 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACTCTTGAGGTCGAGTCCTCC 72109 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| ||||| ||| | || ||||||||||| || ||||| ||||| || || || ||| Sbjct 72108 GACACCATCGACAACGTGAAGGCCAAGATTCAGGACAAGGAGGGCATCCCTCCTGACCAG 72049 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || || || ||||| || || || ||||| || || || || |||||| | || |||||| Sbjct 72048 CAGCGCCTGATTTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTACAAC 71989 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089 | || |||||||| || || ||||| || || | || || || ||| Sbjct 71988 ATCCAGAAGGAGTCCACCCTTCACCTGGTCCTCCGTCTGCGTGGCGGT 71941 Score = 161 bits (178), Expect = 1e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||| || || ||||| || || || || ||||| |||||||| ||||| || Sbjct 71712 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACTCTCGAGGTCGAGTCTTCG 71653 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || ||||| || ||| | || ||||||||||| || ||||| || || ||||| || ||| Sbjct 71652 GATACAATTGACAACGTGAAGGCCAAGATTCAGGACAAGGAGGGTATCCCACCAGACCAG 71593 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || || || || || || || || ||||| || ||||| || || ||| | || |||||| Sbjct 71592 CAGCGTCTCATCTTCGCGGGCAAGCAGCTGGAGGATGGCCGGACACTCTCAGACTACAAC 71533 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGG 172088 |||| |||||||| || || ||| | || || | || || ||||| Sbjct 71532 ATTCAGAAGGAGTCGACGCTGCACTTGGTGCTGCGTCTGCGTGGTGG 71486 >seq757 Length=325751 Score = 176 bits (194), Expect = 6e-39 Identities = 177/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||| || || ||||| || || || ||||||||||| ||||| ||||| || Sbjct 29834 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCATCC 29893 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| ||||| || |||| ||||| || || || ||||| ||||| || || || ||| Sbjct 29894 GACACCATCGACAATGTCAAGGCCAAAATCCAGGACAAGGAGGGCATCCCCCCAGACCAG 29953 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || || || || |||||||| || ||||| || || || || ||||| | || |||||| Sbjct 29954 CAGCGCCTGATCTTTGCTGGCAAGCAGCTCGAGGACGGCCGCACCCTGTCCGACTACAAC 30013 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGTGC 172091 |||| |||||||| || || ||||| || || | || || |||||||| Sbjct 30014 ATTCAGAAGGAGTCCACCCTGCACCTGGTCCTGCGCCTGCGTGGTGGTGC 30063 >seq1759 Length=81252 Score = 152 bits (168), Expect = 7e-32 Identities = 143/182 (79%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 171870 CTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAAT 171929 ||| ||||| ||||| || || || ||||||||||||||||| ||||| || ||||| || Sbjct 67026 CTTCGTGAAGACCCTGACGGGCAAGACTATCACCCTCGAGGTGGAGTCTTCCGACACCAT 66967 Query 171930 CGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACT 171989 ||| ||| | || |||||||| || || ||||| |||||||| || || ||||| ||| | Sbjct 66966 CGACAACGTTAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCTGACCAGCAGCGATT 66907 Query 171990 TATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAACGTTCAAAA 172049 || || || || || |||||||| ||||| || || ||| | || |||||| | || || Sbjct 66906 GATCTTCGCCGGCAAGCAGCTTGAGGATGGCCGCACTCTCTCCGACTACAACATCCAGAA 66847 Query 172050 GG 172051 || Sbjct 66846 GG 66845 >seq1653 Length=80143 Score = 120 bits (132), Expect = 4e-22 Identities = 240/356 (67%), Gaps = 0/356 (0%) Strand=Plus/Plus Query 195632 CCCGAAGAAATTTCGTCTATGGTGTTGATTAAGATGAAGGAGACTGCGGAATCTTTCATG 195691 ||||| || || ||| | ||| | || |||||||||||| || || | | | | Sbjct 53028 CCCGAGGAGATCTCGGCCATGATTCTGGGCAAGATGAAGGAGGTCGCCGAGACCTACCTC 53087 Query 195692 GGTAAAACTGTGAAAGATGCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGA 195751 || || | || | | || || || ||||| || || ||||||| || || || Sbjct 53088 GGAAAGAAGGTCACCCACGCCGTCGTCACTGTCCCCGCCTACTTCAACGACAACCAGCGT 53147 Query 195752 CAGGCGACAAAGGACGCTGCTGCTATTGCGGGTCTAAACTGTCTTAGAATTATCAATGAA 195811 ||||| || ||||| || | ||| || ||||| ||| || | || |||| || Sbjct 53148 CAGGCTACCAAGGATGCCGGCATTATCGCCGGTCTCAACGTCCTCCGTATCGTCAACGAG 53207 Query 195812 CCAACAGCGGCTGCAATTGCTTATGGTCTGGACAAGAACAAGGACGAAGATAAAAATGTA 195871 || || || || || || || || ||||||||||||| | | |||| || | | Sbjct 53208 CCCACGGCCGCCGCCATCGCGTACGGTCTGGACAAGACCGACGACGGTGAGCGTCAGATC 53267 Query 195872 TTGATCTTTGATCTCGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGT 195931 | ||| ||||| ||||||||||| || |||||||| || || || || ||| Sbjct 53268 ATCGTCTACGATCTTGGTGGTGGTACTTTCGATGTCTCTCTCCTGTCGATCGACCAGGGT 53327 Query 195932 ATATTCGAAGTAAAGGCTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGA 195987 | ||||| || ||||||||| |||||||| || || |||||||| |||||||| Sbjct 53328 GTTTTCGAGGTCCTGGCTACTGCCGGTGATACCCACCTCGGTGGTGAGGATTTCGA 53383 >seq2031 Length=292583 Score = 118 bits (130), Expect = 1e-21 Identities = 461/720 (64%), Gaps = 11/720 (2%) Strand=Plus/Minus Query 195719 ACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATT 195778 ||||| || || ||||||| || || || ||||| || ||||| || | | || Sbjct 104609 ACTGTCCCCGCCTACTTCAACGACAACCAGCGTCAGGCCACCAAGGATGCCGGATCCATC 104550 Query 195779 GCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGT 195838 | ||||| ||| || | || ||||| || || || || ||||| ||||| || || Sbjct 104549 TCCGGTCTTAACGTCCTCCGTATCATCAACGAGCCCACCGCTGCTGCCATTGCCTACGGC 104490 Query 195839 CTGGACAAGAACAAGG---ACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGT 195895 || | | |||||| || | || || || |||||| ||||| |||||||| Sbjct 104489 CTTGGCTCCAACAAGTCCAACAAGGAGCGCAACGTCCTGATCTACGATCTGGGTGGTGGC 104430 Query 195896 ACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCT 195955 || || |||||||| || || || || | ||||| | ||| || ||||||||||| Sbjct 104429 ACCTTCGATGTCTCCCTGCTTAACATCCAGGGTGGCGTCTTCACCGTCAAGGCTACTGCC 104370 Query 195956 GGTGATACTCATCTAGGTGGTGAAGATTTCGATGCACGTCTTCTCCGTCATTTGTCTGAT 196015 ||||| || || || ||||| | || ||||| | || || || | | Sbjct 104369 GGTGACACCCACCTGGGTGGACAGGACTTCGACACCAACCTGCTGGACCACTGCAAGAAG 104310 Query 196016 GAGTTCCGTCGAAAGAATAAGAAAGATATTTCTGGAAATCCTAGGGCTCTTCGTCGGCTT 196075 |||||| || ||| ||||| || | || || || | | || || ||||| || Sbjct 104309 GAGTTCACCCGCAAGTTCAAGAAGGACCTGTCCGGCGATGCCCGTGCCCTCCGTCGTCTC 104250 Query 196076 AGGACTGCATGTGAACGTGCCAAACGAACTCTCTCTTCTACG--GCTCAAACAATGGTTG 196133 | ||||| || || |||||||| || || || || | || || || | | ||| Sbjct 104249 CGCACTGCTTGCGAGCGTGCCAAGCGTACCCTGTC--CAGCGGTGCCCAGGCCACCATTG 104192 Query 196134 AGATTGATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTACCCGTGCACGTTTTG 196193 |||| || || | || ||||| || ||| | | || |||||||| ||||| | Sbjct 104191 AGATCGACTCCCTCTTCGACGGCGAGGATTTCAACATGCAGATCACCCGTGCCCGTTTCG 104132 Query 196194 AAGAGTTAAACTCTGATTTGTTTA--GGAAGTGTATGGAACCTGTTGAACAAGTACTTCG 196251 | || | ||| | | || | || | |||| || || || || || Sbjct 104131 AGGACCTGAACGCCAAGGCTTTCACTGGCA--CCCTGGACCCCGTGACCCAGGTTCTCAA 104074 Query 196252 TGACGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTGGGAGGATCAACCCG 196311 || || || || || ||||| || || || || |||||||| || || || ||||| Sbjct 104073 GGATGCCAACATTGAGAAGTCCGGCGTCGACGAGATCGTCCTTGTCGGCGGCTCCACCCG 104014 Query 196312 TATTCCGAAGATTCAACAGATGCTTTCTAGCTTCTTCAATAATAAAGATTTAAACAAAAC 196371 ||| || ||||| || || | || || |||| | || | | | || | Sbjct 104013 TATCCCCAAGATCCAGAAGCTCCTGAGCGACTACTTCGACGGCAAGAAGCTCGAGAAGTC 103954 Query 196372 GATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATTCTCTCAGG 196431 |||||||| ||||| || ||||| || ||||| ||||| ||||| | ||| ||||| || Sbjct 103953 CATCAACCCCGATGAGGCCGTTGCCTACGGTGCTGCCGTCCAGGCCGGTATCCTCTCTGG 103894 >seq1057 Length=53502 Score = 98.7 bits (108), Expect = 1e-15 Identities = 197/286 (69%), Gaps = 16/286 (6%) Strand=Plus/Minus Query 198579 CCGGGTACTGGTAAAACCCTTCTAGCTCGTGCTATCGCGGGTGAATCGAGTGTCCCCTTT 198638 || ||||||||||| || || || || || | ||| ||||| ||| | || || || Sbjct 21787 CCCGGTACTGGTAAGACGCTGCTCGCCAAGGCGACCGCCGGTGAGTCGGGCGT-GCCGTT 21729 Query 198639 CTTCAGTGCTCCGCGG---CGAGTTTCATCGAGATGTTCGTTGGTGTTGGTGCTAAGCGC 198695 |||||||| || |||| ||| ||| |||||||||| || ||||| ||||| | | Sbjct 21728 CTTCAGTG-TCAGCGGCTCCGA-ATTCGTCGAGATGTTTGTCGGTGTCGGTGCCTCGAGA 21671 Query 198696 GTCCGGGAACTCTTTGAGCAAGCACGTGAAAATCAACCATGTATCATCTTCATTGATGAG 198755 || || || ||||||| ||| || || | || || || ||| |||||||||| ||| Sbjct 21670 GTGCGCGACCTCTTTGCGCAGGCCCGGAAGAACGCGCCCTGCATCGTCTTCATTGACGAG 21611 Query 198756 ATTGACGCTGTTGGTAAGAAGCG---TGGTGGAACTACTACACCT-----GGTAATGATG 198807 ||||| || |||| | || | ||||| || | | | || || || | Sbjct 21610 ATTGATGCCATTGGCCGGTCCCGATCCGATGGAA--ACAAGAATTTTGGCGGAAACGAGG 21553 Query 198808 AGCGTGAGCAGACGATTAACCAGCTTCTCACTGAGATGGATGGTTT 198853 |||||||| ||| | |||||| | ||||| |||||||| || || Sbjct 21552 AGCGTGAGGCGACCCTGAACCAGATCCTCACGGAGATGGACGGCTT 21507 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657843338436960