Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryphonectria_20radicalis_20[genbank_20GCA_5F002179595.1_202017-06- 08] 2,318 sequences; 41,022,676 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq1890 100 8e-16 seq1933 91.5 4e-13 seq447 91.5 4e-13 >seq1890 Length=34676 Score = 100 bits (110), Expect = 8e-16 Identities = 130/180 (72%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 251482 GATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCG 251541 ||||| || | | ||||| ||||||||| |||||||| || | ||| |||||||||||| Sbjct 864 GATGCGCCATAGGCAATCAGACAATCACGTTCCATTTCTCCCAGACGCAGACCACCATCG 923 Query 251542 CGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGGAGCGGCTA 251601 || | | |||||||| ||||| | ||||| | | ||| ||| | ||| Sbjct 924 CGCGAACGACCCTCGGTGGGCTGCCTCGTGAGGATGGCGCGAGGGCCGCGAGCGCGAGAG 983 Query 251602 TGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAAGATG 251661 || ||| || | ||||| |||||||| ||||||||||| ||| ||| |||||||| Sbjct 984 TGCATCTTGTCCTGCACCATGTGCTTGAGGCGCTGGTAGAAGATGGGGCCGTTGAAGATG 1043 >seq1933 Length=42650 Score = 91.5 bits (100), Expect = 4e-13 Identities = 131/184 (71%), Gaps = 3/184 (2%) Strand=Plus/Plus Query 155979 CCGTGATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATAC 156038 ||||| ||||| || || || | ||| || | ||||| || |||||||| || Sbjct 26590 CCGTGGTTCTTGCGCAGGTCGAGGAACTCGAAGACATCAGCGTGCCACGGCTCCAGGTAG 26649 Query 156039 ATAGCAAAACTACCATTCCTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTG 156095 || ||||| ||| | |||| |||||||| || || || |||||||| || ||| Sbjct 26650 ATGGCAAAGGCACCGGGGCGCTTGTTGCCACCCTGGTCGACGTAGCGAGCAGTGTTGTTG 26709 Query 156096 AAGACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAA 156155 ||||||| ||||| || || || ||||| || ||||| ||||| ||| ||||| || Sbjct 26710 AAGACACGCAGCATGGGGATGATGCCATTAGACGTGCCGTTGGTGCCGGCAATATAGGAG 26769 Query 156156 CCAG 156159 |||| Sbjct 26770 CCAG 26773 >seq447 Length=327381 Score = 91.5 bits (100), Expect = 4e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 251431 TGGACGCTGTAAGCATCAGATGCGTCATATAGCCGACCCTTGGTGAAGCGAGATGCACCG 251490 ||||| | | ||||||| || | ||| | || || |||| |||| || |||||| Sbjct 17801 TGGACTCGGAAAGCATCTGAAACCTCAAACAGGCGCTCCTTCAGGAAGGCAGCGGCACCG 17860 Query 251491 TGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGAGCCCTA 251550 || | |||||||| ||||| |||||||| |||||||| ||||||||||| | ||| | | Sbjct 17861 TGAGCTATCATACAGTCACGTTCCATTTCTCCGAAACGCAGACCACCATCTCTAGCACGA 17920 Query 251551 CCCTC 251555 ||||| Sbjct 17921 CCCTC 17925 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471773887937166