Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryphonectria_20radicalis_20[genbank_20GCA_5F002179595.1_202017-06-
08] 2,318 sequences; 41,022,676 total letters
Query= NC_022098.1
Length=2473870
Score E
Sequences producing significant alignments: (Bits) Value
seq1 168 1e-35
seq1933 154 2e-31
seq1567 141 1e-27
seq680 138 2e-26
seq1793 123 4e-22
seq291 96.9 5e-14
seq2031 86.0 1e-10
>seq1
Length=275753
Score = 168 bits (186), Expect = 1e-35
Identities = 359/531 (68%), Gaps = 20/531 (4%)
Strand=Plus/Plus
Query 2018920 GGATCGAAAAGTACCGCCCGACAGTGCTCGACGACATCGTGGGCAACGAGCACGCCGTTG 2018979
|| |||| || |||||||| | ||||||||||| || ||||| | | || | |
Sbjct 217100 GGGTCGAGAAATACCGCCCCGTCTTCCTCGACGACATAGTCGGCAATGTTGAGACCATCG 217159
Query 2018980 CCTACCTCAAGGCGCTGGCCGCCGACGGCAACATGCCCAACCTCTTGCTGGCGGGCCCGC 2019039
||||| | ||| |||||||| |||||| | || | | | || |||
Sbjct 217160 AGCGGCTCAAAATCATCGCCAAGGACGGCAATATGCCCCATGTCATTATTTCCGGGACGC 217219
Query 2019040 CCGGCACGGGCAAGACCAC----GAGCATCGCGTGCCTGGCGCGCGTGCTCTTGGGCGCG 2019095
| || | |||||||| || | || || |||||||||||| ||| | ||||
Sbjct 217220 CAGGTATCGGCAAGACGACCTCGGTGC-TC---TGCCTGGCGCGCCAGCTGCTCGGCGAC 217275
Query 2019096 GCCGCCGACGAGGCCGTGCTCGAACTCAATGCGTCAGACGAGCGCGGCGTGGACGTCGTG 2019155
|| | | ||||| || || || ||||| || || ||||||||||| | |||||||||
Sbjct 217276 GCATACAAGGAGGCGGTCCTGGAGCTCAACGCCTCGGACGAGCGCGGTATCGACGTCGTG 217335
Query 2019156 CGTAGAATCATCAAGCATCACGCTTCGAAAAGAA-----TCGACCTGCCGCCCGGCCGCC 2019210
|| | ||||||| |||||| | |||| || ||||||| | |||||||
Sbjct 217336 CGCAACCGCATCAAGG-----GCTTCGCACAGAAGAAGGTCACCCTGCCGGCGGGCCGCC 217390
Query 2019211 ACAAGGTGATCATCCTCGATGAGGCCGACTGCCTTACG-TCGGCGGCCCAGCAGGCCCTC 2019269
||||| | |||||||||| ||||||||| || | ||| |||| || |||||||| ||
Sbjct 217391 ACAAGATCGTCATCCTCGACGAGGCCGACAGCATGACGAGCGGC-GCGCAGCAGGCACTG 217449
Query 2019270 CGATCGACCATGGAAAAGTACACCAACACGACGCGGTTTGCGCTGGCCTGCAACACGTCG 2019329
|| ||| ||||| | ||| ||||||| ||||| || || | || |||||| |||
Sbjct 217450 CGGCGGACGATGGAGATCTACTCCAACACCACGCGCTTCGCCTTCGCATGCAACCAGTCC 217509
Query 2019330 TCGATGGTCATCGAAGCCCTCCAGAGCCGTTGCGCCATCTTGCGCTTTGCGCGCCTCACC 2019389
| | ||||||| | || ||| ||| || || ||| |||| | ||| | | ||
Sbjct 217510 AACAAGATCATCGAGCCGCTGCAGTCCCGGTGTGCGATCCTGCGGTACGCGAGGTTGACG 217569
Query 2019390 GACGCCCAGATCGCCGCGCGTCTGCGCGAGATTATCGACGCCGAAAAGGTC 2019440
||||| ||| ||| | | | |||| |||| ||||| |||||||||
Sbjct 217570 GACGCGCAGGTCGTCAAGAGGCTGCTGCAGATCATCGAGCTGGAAAAGGTC 217620
>seq1933
Length=42650
Score = 154 bits (170), Expect = 2e-31
Identities = 299/444 (67%), Gaps = 10/444 (2%)
Strand=Plus/Plus
Query 2071574 ACTGGACGACCTCGGTGCACAGGTTGGCCGACATCG--TGGTGCCCAGGTTCTGCTGGTT 2071631
||| || || ||| ||||| ||||||| | || ||||||||||||||| ||||||
Sbjct 26243 ACTCGATGATCTCCGTGCAGAGGTTGGAG--CTGCGGATGGTGCCCAGGTTCTTCTGGTT 26300
Query 2071632 GCTGGTCAGGTTGACGGCGTCCTTGTGCAGCATGTAGGGCGCACCCGTCTCGATCTGCGC 2071691
||| | ||||| || |||||||| ||||||| | || || |||||| |||||||
Sbjct 26301 GCTCTTGCGGTTGGCGTGGTCCTTGTACAGCATGAATGGGTTGCCGGTCTCGGTCTGCGC 26360
Query 2071692 CGTGACGATGGCCGACCAAATTTGGCGCGCGGGCACCGAGGTCCTCG---CGCGGCCCTN 2071748
| || |||||| |||| | | | || || ||||| || |||| ||||
Sbjct 26361 CTCGAGGATGGCATACCACAGCTTCTGTGCCTTCA---AGGTCTTCTGGCCGCGACCCTC 26417
Query 2071749 NNNNNNNNNNNNNNNNNAGAGGGCGTCAAAGGCGGCGCCGTGGCACTCGTGCAGGCCGGG 2071808
| | ||| || || | |||||| ||| ||| |||||||||
Sbjct 26418 GCGCTCATACTTCTCGTACAAGGCCTCGAACTCCTCGCCGTAGCAGTCGGCCAGGCCGGG 26477
Query 2071809 CGCCTCGGACGGGCAAAAGAGCGACCAGTCGCCGCCAGTCACCACGCGGCGCATAAACAG 2071868
|||| ||||| | || | |||||||||| || |||| || ||| || ||
Sbjct 26478 ACACTCGTTGGGGCACATAAGGGTCCAGTCGCCGTTCTTCTCCACACGCTTCATGAAGAG 26537
Query 2071869 GTCGCACGTCCACAGGCCGTAAAAGAGATCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTT 2071928
|| |||| ||| | ||||| || || || ||| ||| ||||| ||||||||
Sbjct 26538 ATCAGGGATCCAGAGGGCCAGGAAGAGGTCACGAGCACGGACCTCTTCCTTTCCGTGGTT 26597
Query 2071929 CTTTTTCAGGTCGAGCCAGTCGACGAGGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAA 2071988
||| ||||||||| | |||| || || ||||||||||||||||||||| ||||||
Sbjct 26598 CTTGCGCAGGTCGAGGAACTCGAAGACATCAGCGTGCCACGGCTCCAGGTAGATGGCAAA 26657
Query 2071989 GGCGCCCTTGCGCTTGCCGCCGCC 2072012
||| || ||||||| ||| ||
Sbjct 26658 GGCACCGGGGCGCTTGTTGCCACC 26681
Score = 134 bits (148), Expect = 2e-25
Identities = 361/544 (66%), Gaps = 20/544 (4%)
Strand=Plus/Plus
Query 2069251 TGGTCGACGGTAAACTGGATGGCGTTGGCGGCAGGCCGGGTGCGCAGATAGTACATGCCG 2069310
|||||||| || ||||| || | | || || | | ||||||| || |||||||||||
Sbjct 25279 TGGTCGACTGTGAACTGAATCGGGGCTGCCGCCGCCTGGGTGCGGAGGTAGTACATGCCA 25338
Query 2069311 GTCTTGAGGCCGCGACGCCACGCGTAGGCGTGCATCGACGTGATGGACTCGGCATTCG-- 2069368
|||||||| || | ||| || | |||||| |||||| || | | | |
Sbjct 25339 GTCTTGAGACCCAGCTTCCATCCGGTGAAGTGCATGCTCGTGAT---CTTGCCCATAGAA 25395
Query 2069369 GGACGGCACA-GTAGAGGTTGAGCGACTGGCTCTGGTCGAC-ATAGGGCGCGCGGTCGGC 2069426
|| | || || || ||| || ||||| |||||||| | || || | ||||||||
Sbjct 25396 GGTTCACGCATGTGGATGTTCAGGGACTGAGACTGGTCGATGAAAGCGC-CACGGTCGGC 25454
Query 2069427 CGCCATGT---CGATGGTCACGCGGTTGGACACCTCCCACACGGTCTTGAACAGGGCCTT 2069483
||||| | |||||||| | | || | |||||| ||||||||| | ||||||||
Sbjct 25455 GGCCATCTGGACGATGGTC---CTCTGCGAGATCTCCCAGACGGTCTTGTAGAGGGCCTT 25511
Query 2069484 GAGATGCGGCGGCACCTCGTCGTCATCAAAGCCCTGCACCGAGCCCTGCGCTGCGATGAG 2069543
|| || ||| | | || || | ||| | || || | | | |||||||
Sbjct 25512 GATATCATCCGGGATGCTG-CG-----AATGTTCTGGATAGAACCATCCTCGGCGATGAT 25565
Query 2069544 GCGGTCGCGAAAGTCGGGCGTCCACAGGCCGCGCGCCATCATGCGCTCGACCAGGTGGCG 2069603
||||| | ||| | |||||| || | | || | | || || ||| |
Sbjct 25566 GCGGTTCTTCAGGTCCTCGGACCACAGACCACACTGCACAAGGTCCTTGAGCAGCCATGG 25625
Query 2069604 GTTGACCACGGTAAAGTCGCCCGAGAGCACGCGGCGCGTGTAGATGTTGCTCGTGATGAC 2069663
||||||||| || || || | |||||| || ||| |||||||||| |||| |
Sbjct 25626 GTTGACCACCTGGAACTCACCAGCGAGCACACGCCGCTGGTAGATGTTGGACGTGTAGGG 25685
Query 2069664 CTCGCACGCCTCGGTGTTGCCCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCCAC 2069723
||| | |||| ||||||||||||||||||| |||| ||| |||||||| ||||||
Sbjct 25686 CTCAAAGCACTCGTTGTTGCCCAGGATCTGCGAGGTCGAGGCAGTGGGCATAGGCGCCAT 25745
Query 2069724 GAGCAGCGAGTTGCGCAGGCCGTACTGTCGCACCAGCGCCCGCAGGGCGTCCCAGTCCCA 2069783
| || |||||| | ||| | ||| | | ||| ||||||||||||||||||
Sbjct 25746 CAACAAGCTGTTGCGGACGCCATGCTGCTTGATCTTGGCCTTCAGGGCGTCCCAGTCCCA 25805
Query 2069784 GCGG 2069787
| ||
Sbjct 25806 GAGG 25809
Score = 127 bits (140), Expect = 3e-23
Identities = 184/260 (71%), Gaps = 0/260 (0%)
Strand=Plus/Plus
Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599
||||||||| ||||| || |||| ||| ||||| || |||||||| | | ||| || ||
Sbjct 26682 CTGGTCGACGTAGCGAGCAGTGTTGTTGAAGACACGCAGCATGGGGATGATGCCATTAGA 26741
Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659
| |||||||||||| || | |||| ||| | ||| || | ||| | | ||
Sbjct 26742 CGTGCCGTTGGTGCCGGCAATATAGGAGCCAGTGGCACGGATGCGGTGGACATTGAGACC 26801
Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719
||||| |||||| ||||||||| | || || | || || || || ||||| |||||
Sbjct 26802 AATGCCTCCGGCCATCTTGGAGATCATGGCACAGGTCTTGAGGGTGTCATAGATACCCTC 26861
Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCC 2073779
||| || |||||||||||| || |||||||| || || | | | ||||||
Sbjct 26862 GATGCTATCCTCCTTCATGTCCACTAGGAAGCACGATGACAGCTGTGCCTGAGGCGTGCC 26921
Query 2073780 GGCATTGAAGAGCGTGGGCG 2073799
||| ||||| || || ||||
Sbjct 26922 GGCGTTGAATAGAGTCGGCG 26941
>seq1567
Length=91444
Score = 141 bits (156), Expect = 1e-27
Identities = 186/253 (74%), Gaps = 6/253 (2%)
Strand=Plus/Minus
Query 793891 TGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGA 793950
|||| || ||||| || || || || ||| |||||| |||||||||||||| | |
Sbjct 45608 TGACACCAGCCTTCTGGTAGTCACCAACACGCTTCTCGAAGAAGTTGGTCTTGCCGCCAA 45549
Query 793951 GCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGA 794010
| ||||| |||||| | ||| ||||||| | | |||| ||||||| ||||
Sbjct 45548 GGGAGATGTTCTCCATGAAGTCGAAGGGGTTGGAAGACTTGTAGACCTTCTCGTTGCCGA 45489
Query 794011 G--CGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTT 794068
| ||||| || || |||||||||||||| ||||||||||| ||| |||| ||||||
Sbjct 45488 GGGCGACG--AGGAGACGGTCGGCGACGAACTCAATGTACTGCTTCATCAGGGTGGCGTT 45431
Query 794069 CATGCCGATGAGCGCCAC-GGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGG 794127
|||||||| || ||||| |||||| | ||| | | ||||| ||||| || | ||||
Sbjct 45430 CATGCCGAGCAG-GCCACAGGGCAGGGCCTCAGTCAGGAACTCCTTCTCAATGACAACGG 45372
Query 794128 CCTCGATGATGAT 794140
| || |||||||
Sbjct 45371 CATCCGTGATGAT 45359
Score = 89.7 bits (98), Expect = 8e-12
Identities = 137/195 (70%), Gaps = 9/195 (5%)
Strand=Plus/Minus
Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399
||| ||||| ||| ||||| |||||| ||| || || ||||| ||||| |||||
Sbjct 45286 ACCCTCGTCACGAGAGATCAGCTCGTTGGAGAAGGTCAGACCAGGCATCAGGCCACGCTT 45227
Query 794400 CTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 794459
||||||||| ||||||| ||| ||| ||| ||||| ||||||||||| || ||
Sbjct 45226 CTTGAGCCAGAAGATGGAGGCGAAGGCGCCGCTGAAGAAGATACCCTCGACGGCAGCGAA 45167
Query 794460 GCCGACGAGCCGCTCGGCAAAAGTG---TCCAGGCCCTCTTTGTTGATCCACTTCATCGC 794516
|||| || |||| || | ||| ||| || || | ||||||| ||| ||
Sbjct 45166 TGCGACAAGGCGCTGCGCGTAGGTGGACTCCCGGTCC------TGGATCCACCTCAGAGC 45113
Query 794517 CCACTCTGCCttttt 794531
||| || ||||| ||
Sbjct 45112 CCAGTCGGCCTTCTT 45098
>seq680
Length=162357
Score = 138 bits (152), Expect = 2e-26
Identities = 117/144 (81%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 2035612 AGGTCGACCAACCCACCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGC 2035671
|||||||||| | ||||| ||| | ||||| |||||||||||| | || ||||||
Sbjct 9380 AGGTCGACCAGGAGATGCTCTTCGAGATTATCCTGGCCGCCAACTACATGGATATCAAGG 9321
Query 2035672 CCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAACCTTATCAAGGGCAAGTCGCCCGAGG 2035731
| |||||||| | || |||||||| || |||||| | |||||||||||||| |||||||
Sbjct 9320 CTCTCCTCGACGTTGGCTGCAAGACTGTCGCCAACATGATCAAGGGCAAGTCTCCCGAGG 9261
Query 2035732 ACATCCGCAAGACCTTTAACATCA 2035755
| ||||||||||| || |||||||
Sbjct 9260 AGATCCGCAAGACGTTCAACATCA 9237
>seq1793
Length=59863
Score = 123 bits (136), Expect = 4e-22
Identities = 395/599 (66%), Gaps = 24/599 (4%)
Strand=Plus/Plus
Query 2411377 TCGTCGAGA---TCAATCTTGGAGGCGGCCTCGCTGGCGCTCATCTTGCCGTCCTTGGTG 2411433
|||||||| |||||||||||| || ||||||| | |||||||||| ||| |
Sbjct 22738 TCGTCGAGCAGGTCAATCTTGGAGTTGGGGTCGCTGGAGGACATCTTGCCGCCCTGG--- 22794
Query 2411434 AGGCCCGGCACCAGCGGGTTGAGCAGGTGGATGCGCTTGCGGTAGCCCAGCGCCGGCAGG 2411493
|| || || |||| | ||| | | ||| ||||| ||||||||||||| |||||
Sbjct 22795 AGCCCGGGGACCATGGCGTTCATGATGTGTGCGCGCTGGCGGTAGCCCAGCTTGGGCAGC 22854
Query 2411494 TGGTCGCGCGCAAAGGCAAAGATCTTGCGCTGGTCGCGCCCGCCAAACTGGGCGTCGACG 2411553
|| || || || | ||||||||||||| ||||| ||||| ||||||||
Sbjct 22855 CACTCCTTGGCGGCGGTGAACAGCTTGCGCTGGTCGACGCCGCCGAACTGAACGTCGACG 22914
Query 2411554 TCGAGGTGCTGCTCGTCGAGGGCCTGCATGAGCGGGTAGACGAGGTTGCTGAGCGGCGGG 2411613
| |||| ||||||||| ||| |||| | ||| ||||| | ||| | | || | |
Sbjct 22915 CCCAGGTACTGCTCGTCCAGGACCTGGAGGAGAGGGTATAGGAGACCGGACAAGGGGGCG 22974
Query 2411614 TT-GCGGTCCATCTTGACCACCTGGGCGGCGGCCT--TTTGCGCCGTGCCGACGGTCACG 2411670
|| ||||| | |||||| |||| |||| |||||| || ||| | ||| ||| |||
Sbjct 22975 TTGGCGGT-CTGCTTGACAACCTCGGCGCCGGCCTTCTTGGCGTCATGC--TCGGACACC 23031
Query 2411671 CGCGCCGTCAGGCGCAAGAGGTCGAGCGTGTAGGCGGCGCCATGCTGGTAATCGCTGCCG 2411730
||| | || | ||||| | |||| ||| || | |||||| |||||||
Sbjct 23032 ACCGCGGCCATCTTGTACAGGTCCATGCAGTAGTCGGGGCTCTTCTGGTAGGAGCTGCCG 23091
Query 2411731 ----CGCAC---AAATTCGAGACGATCCAGCGGGACGCCAATGTGCTGGAGCATGGCCTT 2411783
|| || | ||| |||| || | | ||| || | ||||||||| |
Sbjct 23092 TAGACGAACTTGAGCTTCTTGACG-TCGTCCTCGCCGCAGGTGGCATTGAGCATGGCGGT 23150
Query 2411784 GATGGCAAACTCGTACCAG-CGGCACCGGTGCTCGACGAGGTCCCACGGCGTCTTGCCAT 2411842
|||| | || ||| || |||| |||||||| || || || || | ||| |
Sbjct 23151 GATGACGCGCTTGTAGTAGTTGGCA-CGGTGCTCAACCAGCTCGATGGGGGCCTTCAGGT 23209
Query 2411843 TGTCGAGGTGGGCGTGCACGTCGGCAAAGAGGATCCTCACCCGACATCCGGCCTGGAGAA 2411902
|||||||| |||| | |||||| | ||||||| | | | || |||| | |||| |
Sbjct 23210 TGTCGAGGAACCCGTGGATGTCGGCGAGGAGGATCGTGAGCTCGCAGCCGGACCGGAGCA 23269
Query 2411903 AGTCGGCCAGTTTAAAGATGGGCACAAAGTAGCC-CAGATGGGGCTTGCCCGTCGGCGC 2411960
| ||| || || | | || |||||||| || ||| |||| | || |||| |||
Sbjct 23270 GCTGGGCAAGCTTGATGGCAGGGACAAAGTACCCGCAGTGAGGGCGT-CCGGTCGTCGC 23327
>seq291
Length=65476
Score = 96.9 bits (106), Expect = 5e-14
Identities = 119/160 (74%), Gaps = 2/160 (1%)
Strand=Plus/Plus
Query 1485546 GGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGC-GCCAGGCGGCCGG 1485604
|||||| ||||| || | | ||| || |||||| || || ||||| || ||
Sbjct 21229 GGTCTGAATCTCCCGAGAGGAGATGGTAGACTTCTTGTT-GTAGGCAGCCAGCTTGCTGG 21287
Query 1485605 CCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGATCGACATCGATT 1485664
|||||||| ||| || |||| ||||||||||| |||||||||| ||| ||||| |
Sbjct 21288 CCTCGGTGGCGACACGCTCGAAGATGTCGTTGACGAACGAGTTCAGGATGGACATGGCAC 21347
Query 1485665 TGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704
||||||||| || ||||||||| ||||||||||| ||
Sbjct 21348 GGTTGGAGATACCAGTGTCGGGGTGGACCTGCTTGAGGAC 21387
>seq2031
Length=292583
Score = 86.0 bits (94), Expect = 1e-10
Identities = 114/157 (73%), Gaps = 6/157 (4%)
Strand=Plus/Plus
Query 429632 CACCTTCCGGCTCAACCTGGCCGTGACGGGCACCTACAACGCCGACTTTGACGGCGACGA 429691
||||||||| || |||||| | || || | ||||| || || || ||||| |||||
Sbjct 74155 CACCTTCCGTCTGAACCTGTCGGTCACCTCTCCGTACAATGCGGATTTCGACGGTGACGA 74214
Query 429692 GATGAACCTGCACGTGCCCCAGTCGGAGATGGCACGCGCCGAAGTCGCCCACACCATGGG 429751
||||||| |||||||||||||| | ||| | | || ||||| || ||| | | || |
Sbjct 74215 GATGAACTTGCACGTGCCCCAGACTGAGGAGACGCGTGCCGAGGT---CCAGAACCTGTG 74271
Query 429752 ---CGTGGCCCTCAAGGCCGTGTCGCCGCAGGCCAAC 429785
||| ||||||| ||||||||| ||| ||||
Sbjct 74272 TCTGGTGCCCCTCAACATCGTGTCGCCACAGCGCAAC 74308
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7915999823767602
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |