Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryphonectria_20radicalis_20[genbank_20GCA_5F002179595.1_202017-06- 08] 2,318 sequences; 41,022,676 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq1 168 1e-35 seq1933 154 2e-31 seq1567 141 1e-27 seq680 138 2e-26 seq1793 123 4e-22 seq291 96.9 5e-14 seq2031 86.0 1e-10 >seq1 Length=275753 Score = 168 bits (186), Expect = 1e-35 Identities = 359/531 (68%), Gaps = 20/531 (4%) Strand=Plus/Plus Query 2018920 GGATCGAAAAGTACCGCCCGACAGTGCTCGACGACATCGTGGGCAACGAGCACGCCGTTG 2018979 || |||| || |||||||| | ||||||||||| || ||||| | | || | | Sbjct 217100 GGGTCGAGAAATACCGCCCCGTCTTCCTCGACGACATAGTCGGCAATGTTGAGACCATCG 217159 Query 2018980 CCTACCTCAAGGCGCTGGCCGCCGACGGCAACATGCCCAACCTCTTGCTGGCGGGCCCGC 2019039 ||||| | ||| |||||||| |||||| | || | | | || ||| Sbjct 217160 AGCGGCTCAAAATCATCGCCAAGGACGGCAATATGCCCCATGTCATTATTTCCGGGACGC 217219 Query 2019040 CCGGCACGGGCAAGACCAC----GAGCATCGCGTGCCTGGCGCGCGTGCTCTTGGGCGCG 2019095 | || | |||||||| || | || || |||||||||||| ||| | |||| Sbjct 217220 CAGGTATCGGCAAGACGACCTCGGTGC-TC---TGCCTGGCGCGCCAGCTGCTCGGCGAC 217275 Query 2019096 GCCGCCGACGAGGCCGTGCTCGAACTCAATGCGTCAGACGAGCGCGGCGTGGACGTCGTG 2019155 || | | ||||| || || || ||||| || || ||||||||||| | ||||||||| Sbjct 217276 GCATACAAGGAGGCGGTCCTGGAGCTCAACGCCTCGGACGAGCGCGGTATCGACGTCGTG 217335 Query 2019156 CGTAGAATCATCAAGCATCACGCTTCGAAAAGAA-----TCGACCTGCCGCCCGGCCGCC 2019210 || | ||||||| |||||| | |||| || ||||||| | ||||||| Sbjct 217336 CGCAACCGCATCAAGG-----GCTTCGCACAGAAGAAGGTCACCCTGCCGGCGGGCCGCC 217390 Query 2019211 ACAAGGTGATCATCCTCGATGAGGCCGACTGCCTTACG-TCGGCGGCCCAGCAGGCCCTC 2019269 ||||| | |||||||||| ||||||||| || | ||| |||| || |||||||| || Sbjct 217391 ACAAGATCGTCATCCTCGACGAGGCCGACAGCATGACGAGCGGC-GCGCAGCAGGCACTG 217449 Query 2019270 CGATCGACCATGGAAAAGTACACCAACACGACGCGGTTTGCGCTGGCCTGCAACACGTCG 2019329 || ||| ||||| | ||| ||||||| ||||| || || | || |||||| ||| Sbjct 217450 CGGCGGACGATGGAGATCTACTCCAACACCACGCGCTTCGCCTTCGCATGCAACCAGTCC 217509 Query 2019330 TCGATGGTCATCGAAGCCCTCCAGAGCCGTTGCGCCATCTTGCGCTTTGCGCGCCTCACC 2019389 | | ||||||| | || ||| ||| || || ||| |||| | ||| | | || Sbjct 217510 AACAAGATCATCGAGCCGCTGCAGTCCCGGTGTGCGATCCTGCGGTACGCGAGGTTGACG 217569 Query 2019390 GACGCCCAGATCGCCGCGCGTCTGCGCGAGATTATCGACGCCGAAAAGGTC 2019440 ||||| ||| ||| | | | |||| |||| ||||| ||||||||| Sbjct 217570 GACGCGCAGGTCGTCAAGAGGCTGCTGCAGATCATCGAGCTGGAAAAGGTC 217620 >seq1933 Length=42650 Score = 154 bits (170), Expect = 2e-31 Identities = 299/444 (67%), Gaps = 10/444 (2%) Strand=Plus/Plus Query 2071574 ACTGGACGACCTCGGTGCACAGGTTGGCCGACATCG--TGGTGCCCAGGTTCTGCTGGTT 2071631 ||| || || ||| ||||| ||||||| | || ||||||||||||||| |||||| Sbjct 26243 ACTCGATGATCTCCGTGCAGAGGTTGGAG--CTGCGGATGGTGCCCAGGTTCTTCTGGTT 26300 Query 2071632 GCTGGTCAGGTTGACGGCGTCCTTGTGCAGCATGTAGGGCGCACCCGTCTCGATCTGCGC 2071691 ||| | ||||| || |||||||| ||||||| | || || |||||| ||||||| Sbjct 26301 GCTCTTGCGGTTGGCGTGGTCCTTGTACAGCATGAATGGGTTGCCGGTCTCGGTCTGCGC 26360 Query 2071692 CGTGACGATGGCCGACCAAATTTGGCGCGCGGGCACCGAGGTCCTCG---CGCGGCCCTN 2071748 | || |||||| |||| | | | || || ||||| || |||| |||| Sbjct 26361 CTCGAGGATGGCATACCACAGCTTCTGTGCCTTCA---AGGTCTTCTGGCCGCGACCCTC 26417 Query 2071749 NNNNNNNNNNNNNNNNNAGAGGGCGTCAAAGGCGGCGCCGTGGCACTCGTGCAGGCCGGG 2071808 | | ||| || || | |||||| ||| ||| ||||||||| Sbjct 26418 GCGCTCATACTTCTCGTACAAGGCCTCGAACTCCTCGCCGTAGCAGTCGGCCAGGCCGGG 26477 Query 2071809 CGCCTCGGACGGGCAAAAGAGCGACCAGTCGCCGCCAGTCACCACGCGGCGCATAAACAG 2071868 |||| ||||| | || | |||||||||| || |||| || ||| || || Sbjct 26478 ACACTCGTTGGGGCACATAAGGGTCCAGTCGCCGTTCTTCTCCACACGCTTCATGAAGAG 26537 Query 2071869 GTCGCACGTCCACAGGCCGTAAAAGAGATCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTT 2071928 || |||| ||| | ||||| || || || ||| ||| ||||| |||||||| Sbjct 26538 ATCAGGGATCCAGAGGGCCAGGAAGAGGTCACGAGCACGGACCTCTTCCTTTCCGTGGTT 26597 Query 2071929 CTTTTTCAGGTCGAGCCAGTCGACGAGGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAA 2071988 ||| ||||||||| | |||| || || ||||||||||||||||||||| |||||| Sbjct 26598 CTTGCGCAGGTCGAGGAACTCGAAGACATCAGCGTGCCACGGCTCCAGGTAGATGGCAAA 26657 Query 2071989 GGCGCCCTTGCGCTTGCCGCCGCC 2072012 ||| || ||||||| ||| || Sbjct 26658 GGCACCGGGGCGCTTGTTGCCACC 26681 Score = 134 bits (148), Expect = 2e-25 Identities = 361/544 (66%), Gaps = 20/544 (4%) Strand=Plus/Plus Query 2069251 TGGTCGACGGTAAACTGGATGGCGTTGGCGGCAGGCCGGGTGCGCAGATAGTACATGCCG 2069310 |||||||| || ||||| || | | || || | | ||||||| || ||||||||||| Sbjct 25279 TGGTCGACTGTGAACTGAATCGGGGCTGCCGCCGCCTGGGTGCGGAGGTAGTACATGCCA 25338 Query 2069311 GTCTTGAGGCCGCGACGCCACGCGTAGGCGTGCATCGACGTGATGGACTCGGCATTCG-- 2069368 |||||||| || | ||| || | |||||| |||||| || | | | | Sbjct 25339 GTCTTGAGACCCAGCTTCCATCCGGTGAAGTGCATGCTCGTGAT---CTTGCCCATAGAA 25395 Query 2069369 GGACGGCACA-GTAGAGGTTGAGCGACTGGCTCTGGTCGAC-ATAGGGCGCGCGGTCGGC 2069426 || | || || || ||| || ||||| |||||||| | || || | |||||||| Sbjct 25396 GGTTCACGCATGTGGATGTTCAGGGACTGAGACTGGTCGATGAAAGCGC-CACGGTCGGC 25454 Query 2069427 CGCCATGT---CGATGGTCACGCGGTTGGACACCTCCCACACGGTCTTGAACAGGGCCTT 2069483 ||||| | |||||||| | | || | |||||| ||||||||| | |||||||| Sbjct 25455 GGCCATCTGGACGATGGTC---CTCTGCGAGATCTCCCAGACGGTCTTGTAGAGGGCCTT 25511 Query 2069484 GAGATGCGGCGGCACCTCGTCGTCATCAAAGCCCTGCACCGAGCCCTGCGCTGCGATGAG 2069543 || || ||| | | || || | ||| | || || | | | ||||||| Sbjct 25512 GATATCATCCGGGATGCTG-CG-----AATGTTCTGGATAGAACCATCCTCGGCGATGAT 25565 Query 2069544 GCGGTCGCGAAAGTCGGGCGTCCACAGGCCGCGCGCCATCATGCGCTCGACCAGGTGGCG 2069603 ||||| | ||| | |||||| || | | || | | || || ||| | Sbjct 25566 GCGGTTCTTCAGGTCCTCGGACCACAGACCACACTGCACAAGGTCCTTGAGCAGCCATGG 25625 Query 2069604 GTTGACCACGGTAAAGTCGCCCGAGAGCACGCGGCGCGTGTAGATGTTGCTCGTGATGAC 2069663 ||||||||| || || || | |||||| || ||| |||||||||| |||| | Sbjct 25626 GTTGACCACCTGGAACTCACCAGCGAGCACACGCCGCTGGTAGATGTTGGACGTGTAGGG 25685 Query 2069664 CTCGCACGCCTCGGTGTTGCCCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCCAC 2069723 ||| | |||| ||||||||||||||||||| |||| ||| |||||||| |||||| Sbjct 25686 CTCAAAGCACTCGTTGTTGCCCAGGATCTGCGAGGTCGAGGCAGTGGGCATAGGCGCCAT 25745 Query 2069724 GAGCAGCGAGTTGCGCAGGCCGTACTGTCGCACCAGCGCCCGCAGGGCGTCCCAGTCCCA 2069783 | || |||||| | ||| | ||| | | ||| |||||||||||||||||| Sbjct 25746 CAACAAGCTGTTGCGGACGCCATGCTGCTTGATCTTGGCCTTCAGGGCGTCCCAGTCCCA 25805 Query 2069784 GCGG 2069787 | || Sbjct 25806 GAGG 25809 Score = 127 bits (140), Expect = 3e-23 Identities = 184/260 (71%), Gaps = 0/260 (0%) Strand=Plus/Plus Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599 ||||||||| ||||| || |||| ||| ||||| || |||||||| | | ||| || || Sbjct 26682 CTGGTCGACGTAGCGAGCAGTGTTGTTGAAGACACGCAGCATGGGGATGATGCCATTAGA 26741 Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659 | |||||||||||| || | |||| ||| | ||| || | ||| | | || Sbjct 26742 CGTGCCGTTGGTGCCGGCAATATAGGAGCCAGTGGCACGGATGCGGTGGACATTGAGACC 26801 Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719 ||||| |||||| ||||||||| | || || | || || || || ||||| ||||| Sbjct 26802 AATGCCTCCGGCCATCTTGGAGATCATGGCACAGGTCTTGAGGGTGTCATAGATACCCTC 26861 Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCC 2073779 ||| || |||||||||||| || |||||||| || || | | | |||||| Sbjct 26862 GATGCTATCCTCCTTCATGTCCACTAGGAAGCACGATGACAGCTGTGCCTGAGGCGTGCC 26921 Query 2073780 GGCATTGAAGAGCGTGGGCG 2073799 ||| ||||| || || |||| Sbjct 26922 GGCGTTGAATAGAGTCGGCG 26941 >seq1567 Length=91444 Score = 141 bits (156), Expect = 1e-27 Identities = 186/253 (74%), Gaps = 6/253 (2%) Strand=Plus/Minus Query 793891 TGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGA 793950 |||| || ||||| || || || || ||| |||||| |||||||||||||| | | Sbjct 45608 TGACACCAGCCTTCTGGTAGTCACCAACACGCTTCTCGAAGAAGTTGGTCTTGCCGCCAA 45549 Query 793951 GCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGA 794010 | ||||| |||||| | ||| ||||||| | | |||| ||||||| |||| Sbjct 45548 GGGAGATGTTCTCCATGAAGTCGAAGGGGTTGGAAGACTTGTAGACCTTCTCGTTGCCGA 45489 Query 794011 G--CGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTT 794068 | ||||| || || |||||||||||||| ||||||||||| ||| |||| |||||| Sbjct 45488 GGGCGACG--AGGAGACGGTCGGCGACGAACTCAATGTACTGCTTCATCAGGGTGGCGTT 45431 Query 794069 CATGCCGATGAGCGCCAC-GGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGG 794127 |||||||| || ||||| |||||| | ||| | | ||||| ||||| || | |||| Sbjct 45430 CATGCCGAGCAG-GCCACAGGGCAGGGCCTCAGTCAGGAACTCCTTCTCAATGACAACGG 45372 Query 794128 CCTCGATGATGAT 794140 | || ||||||| Sbjct 45371 CATCCGTGATGAT 45359 Score = 89.7 bits (98), Expect = 8e-12 Identities = 137/195 (70%), Gaps = 9/195 (5%) Strand=Plus/Minus Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399 ||| ||||| ||| ||||| |||||| ||| || || ||||| ||||| ||||| Sbjct 45286 ACCCTCGTCACGAGAGATCAGCTCGTTGGAGAAGGTCAGACCAGGCATCAGGCCACGCTT 45227 Query 794400 CTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 794459 ||||||||| ||||||| ||| ||| ||| ||||| ||||||||||| || || Sbjct 45226 CTTGAGCCAGAAGATGGAGGCGAAGGCGCCGCTGAAGAAGATACCCTCGACGGCAGCGAA 45167 Query 794460 GCCGACGAGCCGCTCGGCAAAAGTG---TCCAGGCCCTCTTTGTTGATCCACTTCATCGC 794516 |||| || |||| || | ||| ||| || || | ||||||| ||| || Sbjct 45166 TGCGACAAGGCGCTGCGCGTAGGTGGACTCCCGGTCC------TGGATCCACCTCAGAGC 45113 Query 794517 CCACTCTGCCttttt 794531 ||| || ||||| || Sbjct 45112 CCAGTCGGCCTTCTT 45098 >seq680 Length=162357 Score = 138 bits (152), Expect = 2e-26 Identities = 117/144 (81%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 2035612 AGGTCGACCAACCCACCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGC 2035671 |||||||||| | ||||| ||| | ||||| |||||||||||| | || |||||| Sbjct 9380 AGGTCGACCAGGAGATGCTCTTCGAGATTATCCTGGCCGCCAACTACATGGATATCAAGG 9321 Query 2035672 CCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAACCTTATCAAGGGCAAGTCGCCCGAGG 2035731 | |||||||| | || |||||||| || |||||| | |||||||||||||| ||||||| Sbjct 9320 CTCTCCTCGACGTTGGCTGCAAGACTGTCGCCAACATGATCAAGGGCAAGTCTCCCGAGG 9261 Query 2035732 ACATCCGCAAGACCTTTAACATCA 2035755 | ||||||||||| || ||||||| Sbjct 9260 AGATCCGCAAGACGTTCAACATCA 9237 >seq1793 Length=59863 Score = 123 bits (136), Expect = 4e-22 Identities = 395/599 (66%), Gaps = 24/599 (4%) Strand=Plus/Plus Query 2411377 TCGTCGAGA---TCAATCTTGGAGGCGGCCTCGCTGGCGCTCATCTTGCCGTCCTTGGTG 2411433 |||||||| |||||||||||| || ||||||| | |||||||||| ||| | Sbjct 22738 TCGTCGAGCAGGTCAATCTTGGAGTTGGGGTCGCTGGAGGACATCTTGCCGCCCTGG--- 22794 Query 2411434 AGGCCCGGCACCAGCGGGTTGAGCAGGTGGATGCGCTTGCGGTAGCCCAGCGCCGGCAGG 2411493 || || || |||| | ||| | | ||| ||||| ||||||||||||| ||||| Sbjct 22795 AGCCCGGGGACCATGGCGTTCATGATGTGTGCGCGCTGGCGGTAGCCCAGCTTGGGCAGC 22854 Query 2411494 TGGTCGCGCGCAAAGGCAAAGATCTTGCGCTGGTCGCGCCCGCCAAACTGGGCGTCGACG 2411553 || || || || | ||||||||||||| ||||| ||||| |||||||| Sbjct 22855 CACTCCTTGGCGGCGGTGAACAGCTTGCGCTGGTCGACGCCGCCGAACTGAACGTCGACG 22914 Query 2411554 TCGAGGTGCTGCTCGTCGAGGGCCTGCATGAGCGGGTAGACGAGGTTGCTGAGCGGCGGG 2411613 | |||| ||||||||| ||| |||| | ||| ||||| | ||| | | || | | Sbjct 22915 CCCAGGTACTGCTCGTCCAGGACCTGGAGGAGAGGGTATAGGAGACCGGACAAGGGGGCG 22974 Query 2411614 TT-GCGGTCCATCTTGACCACCTGGGCGGCGGCCT--TTTGCGCCGTGCCGACGGTCACG 2411670 || ||||| | |||||| |||| |||| |||||| || ||| | ||| ||| ||| Sbjct 22975 TTGGCGGT-CTGCTTGACAACCTCGGCGCCGGCCTTCTTGGCGTCATGC--TCGGACACC 23031 Query 2411671 CGCGCCGTCAGGCGCAAGAGGTCGAGCGTGTAGGCGGCGCCATGCTGGTAATCGCTGCCG 2411730 ||| | || | ||||| | |||| ||| || | |||||| ||||||| Sbjct 23032 ACCGCGGCCATCTTGTACAGGTCCATGCAGTAGTCGGGGCTCTTCTGGTAGGAGCTGCCG 23091 Query 2411731 ----CGCAC---AAATTCGAGACGATCCAGCGGGACGCCAATGTGCTGGAGCATGGCCTT 2411783 || || | ||| |||| || | | ||| || | ||||||||| | Sbjct 23092 TAGACGAACTTGAGCTTCTTGACG-TCGTCCTCGCCGCAGGTGGCATTGAGCATGGCGGT 23150 Query 2411784 GATGGCAAACTCGTACCAG-CGGCACCGGTGCTCGACGAGGTCCCACGGCGTCTTGCCAT 2411842 |||| | || ||| || |||| |||||||| || || || || | ||| | Sbjct 23151 GATGACGCGCTTGTAGTAGTTGGCA-CGGTGCTCAACCAGCTCGATGGGGGCCTTCAGGT 23209 Query 2411843 TGTCGAGGTGGGCGTGCACGTCGGCAAAGAGGATCCTCACCCGACATCCGGCCTGGAGAA 2411902 |||||||| |||| | |||||| | ||||||| | | | || |||| | |||| | Sbjct 23210 TGTCGAGGAACCCGTGGATGTCGGCGAGGAGGATCGTGAGCTCGCAGCCGGACCGGAGCA 23269 Query 2411903 AGTCGGCCAGTTTAAAGATGGGCACAAAGTAGCC-CAGATGGGGCTTGCCCGTCGGCGC 2411960 | ||| || || | | || |||||||| || ||| |||| | || |||| ||| Sbjct 23270 GCTGGGCAAGCTTGATGGCAGGGACAAAGTACCCGCAGTGAGGGCGT-CCGGTCGTCGC 23327 >seq291 Length=65476 Score = 96.9 bits (106), Expect = 5e-14 Identities = 119/160 (74%), Gaps = 2/160 (1%) Strand=Plus/Plus Query 1485546 GGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGC-GCCAGGCGGCCGG 1485604 |||||| ||||| || | | ||| || |||||| || || ||||| || || Sbjct 21229 GGTCTGAATCTCCCGAGAGGAGATGGTAGACTTCTTGTT-GTAGGCAGCCAGCTTGCTGG 21287 Query 1485605 CCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGATCGACATCGATT 1485664 |||||||| ||| || |||| ||||||||||| |||||||||| ||| ||||| | Sbjct 21288 CCTCGGTGGCGACACGCTCGAAGATGTCGTTGACGAACGAGTTCAGGATGGACATGGCAC 21347 Query 1485665 TGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704 ||||||||| || ||||||||| ||||||||||| || Sbjct 21348 GGTTGGAGATACCAGTGTCGGGGTGGACCTGCTTGAGGAC 21387 >seq2031 Length=292583 Score = 86.0 bits (94), Expect = 1e-10 Identities = 114/157 (73%), Gaps = 6/157 (4%) Strand=Plus/Plus Query 429632 CACCTTCCGGCTCAACCTGGCCGTGACGGGCACCTACAACGCCGACTTTGACGGCGACGA 429691 ||||||||| || |||||| | || || | ||||| || || || ||||| ||||| Sbjct 74155 CACCTTCCGTCTGAACCTGTCGGTCACCTCTCCGTACAATGCGGATTTCGACGGTGACGA 74214 Query 429692 GATGAACCTGCACGTGCCCCAGTCGGAGATGGCACGCGCCGAAGTCGCCCACACCATGGG 429751 ||||||| |||||||||||||| | ||| | | || ||||| || ||| | | || | Sbjct 74215 GATGAACTTGCACGTGCCCCAGACTGAGGAGACGCGTGCCGAGGT---CCAGAACCTGTG 74271 Query 429752 ---CGTGGCCCTCAAGGCCGTGTCGCCGCAGGCCAAC 429785 ||| ||||||| ||||||||| ||| |||| Sbjct 74272 TCTGGTGCCCCTCAACATCGTGTCGCCACAGCGCAAC 74308 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915999823767602