Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryphonectria_20radicalis_20[genbank_20GCA_5F002179595.1_202017-06-
08] 2,318 sequences; 41,022,676 total letters
Query= NC_024625.1
Length=151109
Score E
Sequences producing significant alignments: (Bits) Value
seq1933 376 2e-99
seq1567 136 4e-27
seq1543 136 4e-27
seq757 129 6e-25
seq1759 96.9 3e-15
>seq1933
Length=42650
Score = 376 bits (416), Expect = 2e-99
Identities = 1134/1740 (65%), Gaps = 26/1740 (1%)
Strand=Plus/Plus
Query 148053 GACTGGCTCTGGTCAATGAACGCGCCACGGTCAGCGGCCATTTCAATGA--GTCGCTTTA 148110
||||| |||||| ||||| ||||||||||| |||||||| | | || ||| || |
Sbjct 25420 GACTGAGACTGGTCGATGAAAGCGCCACGGTCGGCGGCCATCTGGACGATGGTC-CTCTG 25478
Query 148111 TCTTCATCTCCCAGGCCGTCTTGTACAGCCGCTTGATATGATCGGGAATGCCGTCGATGC 148170
| ||||||||| | |||||||| || |||||||| ||| || |||| | |||
Sbjct 25479 -CGAGATCTCCCAGACGGTCTTGTAGAGGGCCTTGATATCATCCGGGATGCTGCGAATGT 25537
Query 148171 GCTGCACCGAGCCGCGGTGCGCAAAAATCTGATTGCGCATTTCGTCCGTGTATAGGTTGA 148230
||| | || || | || | || | || || || || | | ||
Sbjct 25538 TCTGGATAGAACCATCCTCGGCGATGATGCGGTTCTTCAGGTCCTCGGACCACAGACCAC 25597
Query 148231 GCTCGATCAGGTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGC 148290
|| | ||||| | || ||| | | || |||||||| ||||| || |||||||| |
Sbjct 25598 ACTGCACAAGGTCCTTGAGCAGCCATGGGTTGACCACCTGGAACTCACCAGCGAGCACAC 25657
Query 148291 GCCGCAGATACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCG 148350
||||| | || | |||| ||| | || ||||| ||||||||||||||| |||||||
Sbjct 25658 GCCGCTGGTAGATGTTGGACGTGTAGGGCTCAAAGCACTCGTTGTTGCCCAGGATCTGCG 25717
Query 148351 CGGTCGTTGCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTA 148410
||||| || |||||||| ||| | || || |||||| | || | | || |
Sbjct 25718 AGGTCGAGGCAGTGGGCATAGGCGCCATCAACAAGCTGTTGCGGACGCCATGCTGCTTGA 25777
Query 148411 TTTTGCGCTTCAGAGCCGCCCAGTCCCAGAGCGGCGACGGTGTCACGTT---CCACATGT 148467
| ||| |||||| || ||||||||||||| ||| || | ||||| ||||||||
Sbjct 25778 TCTTGGCCTTCAGGGCGTCCCAGTCCCAGAGGTCCGAGGGCTTGACGTTGTCCCACATGT 25837
Query 148468 CGTACTGCAGAATGCCGCGGCTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCG 148527
||||||| || || || | | |||| ||||||||||| ||| || |||| |
Sbjct 25838 CGTACTGAAGGATACCCTGAGAAACGGGAGATCCCTCGTACGACAAGTAGGGACCGTCCA 25897
Query 148528 CCGCCGCCAGTTCGCAGCTCGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCC 148587
|| || | ||||| || ||| ||| ||| ||| || ||||| || |||
Sbjct 25898 CCTTGGCAATGTCGCACGATGCGGTGAGGGCGGCGTGGTAGATGGTCTCAAAGATCTGCT 25957
Query 148588 TGTTGAGCAG-CGCCGCCGACTCGCTTTCGTACGGCATACGCAGCCGCACAAACGCGTCG 148646
|||| ||| | || | | || ||| | |||| || || || || || ||
Sbjct 25958 TGTTCAGCTGACGGGCCTCAGGCG-ACTCGAAGGGCAGGCGGAGAGCCAAGAAGGCATCA 26016
Query 148647 GCAAGGCCCTGTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTC 148706
|| || ||||| ||||||||||| || || ||||| |||||| | ||| || |
Sbjct 26017 GCCAGACCCTGAACGCCCACGCCGATAGGGCGGTGGCGCATGTTGCTGTTGCGAGCCTCC 26076
Query 148707 TCGAGCGGATAGTGGTTGCGGTCGATGATCTTGTCAAGATTGCGCACCACCACCTTTGTA 148766
| || ||||||| |||| |||| |||||||| || ||||| || || || | ||
Sbjct 26077 TGGACAGGATAGTAGTTGATATCGACGATCTTGTTCAGGTTGCGGACGACAACTTGGGTG 26136
Query 148767 ATTCTGCGCAGCAATTCAAAATCGTA------CTTGTCATCTACGATGCATCGGTTCACG 148820
| | | |||||| | || | ||| || |||| ||| | | | || |
Sbjct 26137 ACTTCGTGCAGCAGCTGGAAGTTGTAGCAGTCGTTCTCATAGTCGACGAACTGAGGCAGG 26196
Query 148821 GCGATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCG 148880
||||| || || || ||||| || || ||| || ||||| |||||| | ||||||
Sbjct 26197 GCGATGGACGCCAGGTTGCAGACAGCAACCTCGTCAGGGGCAGAGTACTCGATGATCTCC 26256
Query 148881 GCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCAC 148940
| ||| || ||| || ||| ||||| |||||| || |||||||||| ||||
Sbjct 26257 GTGCAGAGGTTGGAGCTGCGGATGGTGCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGGCG 26316
Query 148941 GCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTATG--AACC 148998
|||||||||||||||| | || ||| || || ||||| || | ||| | |
Sbjct 26317 TGGTCCTTGTACAGCATGAATGGGTTGCCGGTCTCGGTCTGCGCCTCGAGGATGGCATAC 26376
Query 148999 GATGCAGGTCCTGCGCGCGCACTTGCTGCTCGTAGCGACCCTCCTGCTCGTA--TAAAGT 149056
| ||| | ||| || || || || | ||||||||| |||| || | ||
Sbjct 26377 CA--CAGCTTCTGTGCCTTCAAGGTCTTCTGGCCGCGACCCTCGCGCTCATACTTCTCGT 26434
Query 149057 ATACAGCCGCTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGTGCGGGCA 149116
| | || ||||||| ||||||||||||| ||| | || ||||| |||| || |||||
Sbjct 26435 ACAAGGC--CTCGAACTCCTCGCCGTAGCAGTCGGCCAGGCCGGGACACTCGTTGGGGCA 26492
Query 149117 CATGAGCGACCACACGCCGTCCGCGTACACGCGCTTCATAAACAGATCGGGCACCCAGAG 149176
||| || | ||| |||||| | | ||| |||||||| || ||||| || | ||||||
Sbjct 26493 CATAAGGGTCCAGTCGCCGTTCTTCTCCACACGCTTCATGAAGAGATCAGGGATCCAGAG 26552
Query 149177 CGCGTACATGAGGTCGCGCGCCTTGCAGTCTTCGGCGCCCATGTTGCGGCGCAGGTTGAG 149236
|| | |||||| || || | ||||| || ||| |||||||| |||
Sbjct 26553 GGCCAGGAAGAGGTCACGAGCACGGACCTCTTCCTTTCCGTGGTTCTTGCGCAGGTCGAG 26612
Query 149237 CACGCTGAATATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCCCTTGCGC-- 149294
| ||| | || |||||||||||||| | ||| | || | || || ||||
Sbjct 26613 GAACTCGAAGACATCAGCGTGCCACGGCTCCAGGTAGATGGCAAAGGCACCGGGGCGCTT 26672
Query 149295 -TTGCCGCCCTGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAACCATAGGTTCAAT 149353
||||| ||||||||||||| ||| | ||||||| || || || | ||| || ||
Sbjct 26673 GTTGCCACCCTGGTCGACGTAGCGAGCAGTGTTGTTGAAGACACGCAGCATGGGGATGAT 26732
Query 149354 GCCACTGGCAGTGCCGTTAGTAGAGCTAATGCGACTGCCGCGCGCTCGCACTTTGTGCAC 149413
|||| | | |||||||| || | ||| ||| || || | ||| ||
Sbjct 26733 GCCATTAGACGTGCCGTTGGTGCCGGCAATATAGGAGCCAGTGGCACGGATGCGGTGGAC 26792
Query 149414 GTTGACGCCGATGCCGCCGCCGTACTTTGAGATGGCCGCGCAGTCGCCGAGCGTCGAGTA 149473
|||| || ||||| ||| | ||| ||||| || ||| ||| || ||
Sbjct 26793 ATTGAGACCAATGCCTCCGGCCATCTTGGAGATCATGGCACAGGTCTTGAGGGTGTCATA 26852
Query 149474 GATGCCCTCGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGAGCACATTTGCGGAAA 149533
||| ||||||||||| || ||||||| || || |||||||| ||| || |
Sbjct 26853 GATACCCTCGATGCTATCCTCCTTCATGTCCACTAGGAAGCACGATGACAGCTGTGCCTG 26912
Query 149534 ACGCGTGCCGGCCGCGAACATGGTGGGGCTGGCGTGTGTAAAATATTTCTGGCTCATCAT 149593
| |||||||||| ||| | || || |||||||| || | || | | |
Sbjct 26913 AGGCGTGCCGGCGTTGAATAGAGTCGGCGAAGCGTGTGTGAAGAACTTGTTGGAGAGGTA 26972
Query 149594 CTCGTACGACTCGAGCACGCGGTCCATGTCATCGCCATGGATGCCTATGGCGACGCGCAT 149653
| ||| | ||| || || | || |||| || || |||||| | |||||| |||||
Sbjct 26973 GTTGTAGGTCTCCAGAACCCTCTCGATGTTGTCTCCCCAGATGCCAACGGCGACACGCAT 27032
Query 149654 CAGCATATGCTGCGGTCGCTCCGCCACTTTGTTTCCAATTTTGAGCAAGTAGCCGTTTTC 149713
|||||| ||||| || ||||| | || ||| | ||||| | || | ||
Sbjct 27033 CAGCATGTGCTGTGGCCGCTCGACGACCTTGCCGTTGAGCTTGAGGAGATACGAGCGCTC 27092
Query 149714 TAGTGTCTTGTAGCCAAAGTACTTGTAGTCAAAGTCGCGGCCGTGGTCAATGGCGGCGTC 149773
|| |||||| |||| ||||| | ||| | |||| ||| | | | | ||||| | |||
Sbjct 27093 CAGGGTCTTGAAGCCGAAGTATTGGTATTGGTAGTCTCGGTCATAGACGATGGCCGAGTC 27152
>seq1567
Length=91444
Score = 136 bits (150), Expect = 4e-27
Identities = 348/522 (67%), Gaps = 21/522 (4%)
Strand=Plus/Minus
Query 120351 CTTGTACTCGCCGACGCGTTTCTCAAAAAAGTTTGTTTTGCCCTCCATCGAAATGTTGTT 120410
|| ||| || || || || ||||| || ||||| || ||||| | | || ||||| |
Sbjct 45595 CTGGTAGTCACCAACACGCTTCTCGAAGAAGTTGGTCTTGCCGCCAAGGGAGATGTTCTC 45536
Query 120411 CATAAACTCGAACGGGTTGCTCGCGTTAAAGTATTTCGGCTGGCCCAACTGTACGAGCAG 120470
||| || ||||| |||||| | || || ||| | ||| | ||||| ||
Sbjct 45535 CATGAAGTCGAAGGGGTTGGAAGACTTGTAGACCTTCTCGTTGCCGAGGGCGACGAGGAG 45476
Query 120471 TCGGTCCGCTACAAACTCAATGTACTCGCACATG-GACTGCGCGTTCATGCCCAGCAACG 120529
||||| || || ||||||||||||| ||| | || ||||||||||| |||| |
Sbjct 45475 ACGGTCGGCGACGAACTCAATGTACTGCTTCATCAGGGTG-GCGTTCATGCCGAGCAG-G 45418
Query 120530 CCACCGG-CAACGCCGACGTGAAAAACTCCTTCTCAATGTCCACCGCCTCCTTGAACATG 120588
|||| || || ||| || | ||||||||||||||| | || || ||| ||| ||
Sbjct 45417 CCACAGGGCAGGGCCTCAGTCAGGAACTCCTTCTCAATGACAACGGCATCCGTGATGATA 45358
Query 120589 GC------GAGCATAGTG-TGGCCGGGCATCTTGTGTTCGATGCGCGTTCGGTAGTACAG 120641
|| | || || | || |||| |||| | | || | | | | |||
Sbjct 45357 GCCTCTACGCGC----TGCTTGCTGGGCCGGTTGT-TCAGGTGGGAGAACAG-----CAG 45308
Query 120642 GCACGCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTCAG 120701
||| || ||||| || || || |||||||| || || |||||||||||| || |||||
Sbjct 45307 GCAGGCGAAGTCAGTATGTAGACCCTCGTCACGAGAGATCAGCTCGTTGGAGAAGGTCAG 45248
Query 120702 GCCGGGCATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAGAA 120761
|| ||||| | ||| | |||||| |||| |||| ||| ||| ||| |||||
Sbjct 45247 ACCAGGCATCAGGCCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCGCCGCTGAAGAA 45188
Query 120762 CACGCCCTCCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTGCTGTC 120821
| ||||| ||| || || ||||| | ||||| || | || | | | | |
Sbjct 45187 GATACCCTCGACGGCAGCGAATGCGACAAGGCGCTGCGCGTAGGTGGACTCCCGGTCCTG 45128
Query 120822 GATCCACTTCATGGCCCACTCGGCCTTTTTGCGCACGCACGG 120863
||||||| ||| ||||| |||||||| ||||| | ||| ||
Sbjct 45127 GATCCACCTCAGAGCCCAGTCGGCCTTCTTGCGGATGCAAGG 45086
>seq1543
Length=161075
Score = 136 bits (150), Expect = 4e-27
Identities = 149/198 (75%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522
||||||||| ||||| || ||||| ||| | ||| ||||||||||||||||||
Sbjct 71971 GGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCC 72030
Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582
||| |||| || ||||||||||| ||||||||||| |||||||| ||||| |||
Sbjct 72031 GGCGAAAATCAGGCGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTGAATCTTGGCCTT 72090
Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642
| | || | ||||||| || ||| || || | |||| ||| |||||||| || ||
Sbjct 72091 CACGTTGTCGATGGTGTCGGAGGACTCGACCTCAAGAGTGATGGTCTTGCCGGTGAGGGT 72150
Query 133643 TTTTACGAAAATCTGCAT 133660
|| ||||| ||||||||
Sbjct 72151 CTTGACGAAGATCTGCAT 72168
Score = 120 bits (132), Expect = 3e-22
Identities = 147/199 (74%), Gaps = 4/199 (2%)
Strand=Plus/Plus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGCTGCTTGC 133521
|| ||||| ||||| || ||||| ||| | || ||| ||||||||||||||| |
Sbjct 71744 GTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGT--ACGGCCGTCCTCGAGCTGCTTTC 71801
Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581
| || | ||||| ||||||||||| || ||||| || |||||||| ||||| ||
Sbjct 71802 CAGCAAAGATGAGGCGCTGCTGGTCTGGGGGGATACCCTCCTTGTCCTGAATCTTGGCCT 71861
Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641
| | | || | ||||||| || ||| || |||| ||||| ||| |||||||| || |
Sbjct 71862 TCACGTTGTCGATGGTGTCGGAGGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGCG 71921
Query 133642 TTTTTACGAAAATCTGCAT 133660
| || ||||| ||||||||
Sbjct 71922 TCTTGACGAAGATCTGCAT 71940
Score = 111 bits (122), Expect = 2e-19
Identities = 118/156 (76%), Gaps = 0/156 (0%)
Strand=Plus/Plus
Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565
||||| ||||||||||||||| | ||||| ||||||||||| || ||||| || ||||||
Sbjct 71558 TCCTCCAGCTGCTTGCCCGCGAAGATGAGACGCTGCTGGTCTGGTGGGATACCCTCCTTG 71617
Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625
|| ||||| ||| | | |||| || || | | ||| || |||| |||| |
Sbjct 71618 TCCTGAATCTTGGCCTTCACGTTGTCAATTGTATCCGAAGACTCGACCTCGAGAGTGATG 71677
Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCATG 133661
|| |||||||| || || || ||||| |||||||||
Sbjct 71678 GTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATG 71713
>seq757
Length=325751
Score = 129 bits (142), Expect = 6e-25
Identities = 148/199 (74%), Gaps = 0/199 (0%)
Strand=Plus/Minus
Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522
||||||||| ||||| || ||||| ||| || ||| ||||||||||||||||||
Sbjct 30031 GGTGGACTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCGAGCTGCTTGCC 29972
Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582
|| | || || ||||||||||| || |||||||| |||||||| ||| || |||
Sbjct 29971 AGCAAAGATCAGGCGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGGATTTTGGCCTT 29912
Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642
|| | || | ||||||| | |||||| || | ||||| || ||||| || || ||
Sbjct 29911 GACATTGTCGATGGTGTCGGATGACTCCACCTCAAGGGTGATAGTCTTGCCCGTGAGGGT 29852
Query 133643 TTTTACGAAAATCTGCATG 133661
|| ||||| |||||||||
Sbjct 29851 CTTGACGAAGATCTGCATG 29833
>seq1759
Length=81252
Score = 96.9 bits (106), Expect = 3e-15
Identities = 109/146 (75%), Gaps = 0/146 (0%)
Strand=Plus/Plus
Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565
||||| ||||||||||| ||| | || | ||||||||||| || || ||||| ||||||
Sbjct 66880 TCCTCAAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCAGGGGGAATGCCCTCCTTG 66939
Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625
|| |||||| ||| | | || | ||||||| | |||||| |||| |||||
Sbjct 66940 TCCTGGATCTTGGCCTTAACGTTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATA 66999
Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAA 133651
|| ||||| ||||| || || |||||
Sbjct 67000 GTCTTGCCCGTCAGGGTCTTCACGAA 67025
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 483406792882320
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