Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryphonectria_20radicalis_20[genbank_20GCA_5F002179595.1_202017-06- 08] 2,318 sequences; 41,022,676 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq1933 376 2e-99 seq1567 136 4e-27 seq1543 136 4e-27 seq757 129 6e-25 seq1759 96.9 3e-15 >seq1933 Length=42650 Score = 376 bits (416), Expect = 2e-99 Identities = 1134/1740 (65%), Gaps = 26/1740 (1%) Strand=Plus/Plus Query 148053 GACTGGCTCTGGTCAATGAACGCGCCACGGTCAGCGGCCATTTCAATGA--GTCGCTTTA 148110 ||||| |||||| ||||| ||||||||||| |||||||| | | || ||| || | Sbjct 25420 GACTGAGACTGGTCGATGAAAGCGCCACGGTCGGCGGCCATCTGGACGATGGTC-CTCTG 25478 Query 148111 TCTTCATCTCCCAGGCCGTCTTGTACAGCCGCTTGATATGATCGGGAATGCCGTCGATGC 148170 | ||||||||| | |||||||| || |||||||| ||| || |||| | ||| Sbjct 25479 -CGAGATCTCCCAGACGGTCTTGTAGAGGGCCTTGATATCATCCGGGATGCTGCGAATGT 25537 Query 148171 GCTGCACCGAGCCGCGGTGCGCAAAAATCTGATTGCGCATTTCGTCCGTGTATAGGTTGA 148230 ||| | || || | || | || | || || || || | | || Sbjct 25538 TCTGGATAGAACCATCCTCGGCGATGATGCGGTTCTTCAGGTCCTCGGACCACAGACCAC 25597 Query 148231 GCTCGATCAGGTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGC 148290 || | ||||| | || ||| | | || |||||||| ||||| || |||||||| | Sbjct 25598 ACTGCACAAGGTCCTTGAGCAGCCATGGGTTGACCACCTGGAACTCACCAGCGAGCACAC 25657 Query 148291 GCCGCAGATACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCG 148350 ||||| | || | |||| ||| | || ||||| ||||||||||||||| ||||||| Sbjct 25658 GCCGCTGGTAGATGTTGGACGTGTAGGGCTCAAAGCACTCGTTGTTGCCCAGGATCTGCG 25717 Query 148351 CGGTCGTTGCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTA 148410 ||||| || |||||||| ||| | || || |||||| | || | | || | Sbjct 25718 AGGTCGAGGCAGTGGGCATAGGCGCCATCAACAAGCTGTTGCGGACGCCATGCTGCTTGA 25777 Query 148411 TTTTGCGCTTCAGAGCCGCCCAGTCCCAGAGCGGCGACGGTGTCACGTT---CCACATGT 148467 | ||| |||||| || ||||||||||||| ||| || | ||||| |||||||| Sbjct 25778 TCTTGGCCTTCAGGGCGTCCCAGTCCCAGAGGTCCGAGGGCTTGACGTTGTCCCACATGT 25837 Query 148468 CGTACTGCAGAATGCCGCGGCTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCG 148527 ||||||| || || || | | |||| ||||||||||| ||| || |||| | Sbjct 25838 CGTACTGAAGGATACCCTGAGAAACGGGAGATCCCTCGTACGACAAGTAGGGACCGTCCA 25897 Query 148528 CCGCCGCCAGTTCGCAGCTCGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCC 148587 || || | ||||| || ||| ||| ||| ||| || ||||| || ||| Sbjct 25898 CCTTGGCAATGTCGCACGATGCGGTGAGGGCGGCGTGGTAGATGGTCTCAAAGATCTGCT 25957 Query 148588 TGTTGAGCAG-CGCCGCCGACTCGCTTTCGTACGGCATACGCAGCCGCACAAACGCGTCG 148646 |||| ||| | || | | || ||| | |||| || || || || || || Sbjct 25958 TGTTCAGCTGACGGGCCTCAGGCG-ACTCGAAGGGCAGGCGGAGAGCCAAGAAGGCATCA 26016 Query 148647 GCAAGGCCCTGTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTC 148706 || || ||||| ||||||||||| || || ||||| |||||| | ||| || | Sbjct 26017 GCCAGACCCTGAACGCCCACGCCGATAGGGCGGTGGCGCATGTTGCTGTTGCGAGCCTCC 26076 Query 148707 TCGAGCGGATAGTGGTTGCGGTCGATGATCTTGTCAAGATTGCGCACCACCACCTTTGTA 148766 | || ||||||| |||| |||| |||||||| || ||||| || || || | || Sbjct 26077 TGGACAGGATAGTAGTTGATATCGACGATCTTGTTCAGGTTGCGGACGACAACTTGGGTG 26136 Query 148767 ATTCTGCGCAGCAATTCAAAATCGTA------CTTGTCATCTACGATGCATCGGTTCACG 148820 | | | |||||| | || | ||| || |||| ||| | | | || | Sbjct 26137 ACTTCGTGCAGCAGCTGGAAGTTGTAGCAGTCGTTCTCATAGTCGACGAACTGAGGCAGG 26196 Query 148821 GCGATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCG 148880 ||||| || || || ||||| || || ||| || ||||| |||||| | |||||| Sbjct 26197 GCGATGGACGCCAGGTTGCAGACAGCAACCTCGTCAGGGGCAGAGTACTCGATGATCTCC 26256 Query 148881 GCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCAC 148940 | ||| || ||| || ||| ||||| |||||| || |||||||||| |||| Sbjct 26257 GTGCAGAGGTTGGAGCTGCGGATGGTGCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGGCG 26316 Query 148941 GCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTATG--AACC 148998 |||||||||||||||| | || ||| || || ||||| || | ||| | | Sbjct 26317 TGGTCCTTGTACAGCATGAATGGGTTGCCGGTCTCGGTCTGCGCCTCGAGGATGGCATAC 26376 Query 148999 GATGCAGGTCCTGCGCGCGCACTTGCTGCTCGTAGCGACCCTCCTGCTCGTA--TAAAGT 149056 | ||| | ||| || || || || | ||||||||| |||| || | || Sbjct 26377 CA--CAGCTTCTGTGCCTTCAAGGTCTTCTGGCCGCGACCCTCGCGCTCATACTTCTCGT 26434 Query 149057 ATACAGCCGCTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGTGCGGGCA 149116 | | || ||||||| ||||||||||||| ||| | || ||||| |||| || ||||| Sbjct 26435 ACAAGGC--CTCGAACTCCTCGCCGTAGCAGTCGGCCAGGCCGGGACACTCGTTGGGGCA 26492 Query 149117 CATGAGCGACCACACGCCGTCCGCGTACACGCGCTTCATAAACAGATCGGGCACCCAGAG 149176 ||| || | ||| |||||| | | ||| |||||||| || ||||| || | |||||| Sbjct 26493 CATAAGGGTCCAGTCGCCGTTCTTCTCCACACGCTTCATGAAGAGATCAGGGATCCAGAG 26552 Query 149177 CGCGTACATGAGGTCGCGCGCCTTGCAGTCTTCGGCGCCCATGTTGCGGCGCAGGTTGAG 149236 || | |||||| || || | ||||| || ||| |||||||| ||| Sbjct 26553 GGCCAGGAAGAGGTCACGAGCACGGACCTCTTCCTTTCCGTGGTTCTTGCGCAGGTCGAG 26612 Query 149237 CACGCTGAATATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCCCTTGCGC-- 149294 | ||| | || |||||||||||||| | ||| | || | || || |||| Sbjct 26613 GAACTCGAAGACATCAGCGTGCCACGGCTCCAGGTAGATGGCAAAGGCACCGGGGCGCTT 26672 Query 149295 -TTGCCGCCCTGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAACCATAGGTTCAAT 149353 ||||| ||||||||||||| ||| | ||||||| || || || | ||| || || Sbjct 26673 GTTGCCACCCTGGTCGACGTAGCGAGCAGTGTTGTTGAAGACACGCAGCATGGGGATGAT 26732 Query 149354 GCCACTGGCAGTGCCGTTAGTAGAGCTAATGCGACTGCCGCGCGCTCGCACTTTGTGCAC 149413 |||| | | |||||||| || | ||| ||| || || | ||| || Sbjct 26733 GCCATTAGACGTGCCGTTGGTGCCGGCAATATAGGAGCCAGTGGCACGGATGCGGTGGAC 26792 Query 149414 GTTGACGCCGATGCCGCCGCCGTACTTTGAGATGGCCGCGCAGTCGCCGAGCGTCGAGTA 149473 |||| || ||||| ||| | ||| ||||| || ||| ||| || || Sbjct 26793 ATTGAGACCAATGCCTCCGGCCATCTTGGAGATCATGGCACAGGTCTTGAGGGTGTCATA 26852 Query 149474 GATGCCCTCGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGAGCACATTTGCGGAAA 149533 ||| ||||||||||| || ||||||| || || |||||||| ||| || | Sbjct 26853 GATACCCTCGATGCTATCCTCCTTCATGTCCACTAGGAAGCACGATGACAGCTGTGCCTG 26912 Query 149534 ACGCGTGCCGGCCGCGAACATGGTGGGGCTGGCGTGTGTAAAATATTTCTGGCTCATCAT 149593 | |||||||||| ||| | || || |||||||| || | || | | | Sbjct 26913 AGGCGTGCCGGCGTTGAATAGAGTCGGCGAAGCGTGTGTGAAGAACTTGTTGGAGAGGTA 26972 Query 149594 CTCGTACGACTCGAGCACGCGGTCCATGTCATCGCCATGGATGCCTATGGCGACGCGCAT 149653 | ||| | ||| || || | || |||| || || |||||| | |||||| ||||| Sbjct 26973 GTTGTAGGTCTCCAGAACCCTCTCGATGTTGTCTCCCCAGATGCCAACGGCGACACGCAT 27032 Query 149654 CAGCATATGCTGCGGTCGCTCCGCCACTTTGTTTCCAATTTTGAGCAAGTAGCCGTTTTC 149713 |||||| ||||| || ||||| | || ||| | ||||| | || | || Sbjct 27033 CAGCATGTGCTGTGGCCGCTCGACGACCTTGCCGTTGAGCTTGAGGAGATACGAGCGCTC 27092 Query 149714 TAGTGTCTTGTAGCCAAAGTACTTGTAGTCAAAGTCGCGGCCGTGGTCAATGGCGGCGTC 149773 || |||||| |||| ||||| | ||| | |||| ||| | | | | ||||| | ||| Sbjct 27093 CAGGGTCTTGAAGCCGAAGTATTGGTATTGGTAGTCTCGGTCATAGACGATGGCCGAGTC 27152 >seq1567 Length=91444 Score = 136 bits (150), Expect = 4e-27 Identities = 348/522 (67%), Gaps = 21/522 (4%) Strand=Plus/Minus Query 120351 CTTGTACTCGCCGACGCGTTTCTCAAAAAAGTTTGTTTTGCCCTCCATCGAAATGTTGTT 120410 || ||| || || || || ||||| || ||||| || ||||| | | || ||||| | Sbjct 45595 CTGGTAGTCACCAACACGCTTCTCGAAGAAGTTGGTCTTGCCGCCAAGGGAGATGTTCTC 45536 Query 120411 CATAAACTCGAACGGGTTGCTCGCGTTAAAGTATTTCGGCTGGCCCAACTGTACGAGCAG 120470 ||| || ||||| |||||| | || || ||| | ||| | ||||| || Sbjct 45535 CATGAAGTCGAAGGGGTTGGAAGACTTGTAGACCTTCTCGTTGCCGAGGGCGACGAGGAG 45476 Query 120471 TCGGTCCGCTACAAACTCAATGTACTCGCACATG-GACTGCGCGTTCATGCCCAGCAACG 120529 ||||| || || ||||||||||||| ||| | || ||||||||||| |||| | Sbjct 45475 ACGGTCGGCGACGAACTCAATGTACTGCTTCATCAGGGTG-GCGTTCATGCCGAGCAG-G 45418 Query 120530 CCACCGG-CAACGCCGACGTGAAAAACTCCTTCTCAATGTCCACCGCCTCCTTGAACATG 120588 |||| || || ||| || | ||||||||||||||| | || || ||| ||| || Sbjct 45417 CCACAGGGCAGGGCCTCAGTCAGGAACTCCTTCTCAATGACAACGGCATCCGTGATGATA 45358 Query 120589 GC------GAGCATAGTG-TGGCCGGGCATCTTGTGTTCGATGCGCGTTCGGTAGTACAG 120641 || | || || | || |||| |||| | | || | | | | ||| Sbjct 45357 GCCTCTACGCGC----TGCTTGCTGGGCCGGTTGT-TCAGGTGGGAGAACAG-----CAG 45308 Query 120642 GCACGCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTCAG 120701 ||| || ||||| || || || |||||||| || || |||||||||||| || ||||| Sbjct 45307 GCAGGCGAAGTCAGTATGTAGACCCTCGTCACGAGAGATCAGCTCGTTGGAGAAGGTCAG 45248 Query 120702 GCCGGGCATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAGAA 120761 || ||||| | ||| | |||||| |||| |||| ||| ||| ||| ||||| Sbjct 45247 ACCAGGCATCAGGCCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCGCCGCTGAAGAA 45188 Query 120762 CACGCCCTCCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTGCTGTC 120821 | ||||| ||| || || ||||| | ||||| || | || | | | | | Sbjct 45187 GATACCCTCGACGGCAGCGAATGCGACAAGGCGCTGCGCGTAGGTGGACTCCCGGTCCTG 45128 Query 120822 GATCCACTTCATGGCCCACTCGGCCTTTTTGCGCACGCACGG 120863 ||||||| ||| ||||| |||||||| ||||| | ||| || Sbjct 45127 GATCCACCTCAGAGCCCAGTCGGCCTTCTTGCGGATGCAAGG 45086 >seq1543 Length=161075 Score = 136 bits (150), Expect = 4e-27 Identities = 149/198 (75%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||||||||| ||||| || ||||| ||| | ||| |||||||||||||||||| Sbjct 71971 GGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCC 72030 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| |||| || ||||||||||| ||||||||||| |||||||| ||||| ||| Sbjct 72031 GGCGAAAATCAGGCGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTGAATCTTGGCCTT 72090 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | || | ||||||| || ||| || || | |||| ||| |||||||| || || Sbjct 72091 CACGTTGTCGATGGTGTCGGAGGACTCGACCTCAAGAGTGATGGTCTTGCCGGTGAGGGT 72150 Query 133643 TTTTACGAAAATCTGCAT 133660 || ||||| |||||||| Sbjct 72151 CTTGACGAAGATCTGCAT 72168 Score = 120 bits (132), Expect = 3e-22 Identities = 147/199 (74%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGCTGCTTGC 133521 || ||||| ||||| || ||||| ||| | || ||| ||||||||||||||| | Sbjct 71744 GTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGT--ACGGCCGTCCTCGAGCTGCTTTC 71801 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | ||||| ||||||||||| || ||||| || |||||||| ||||| || Sbjct 71802 CAGCAAAGATGAGGCGCTGCTGGTCTGGGGGGATACCCTCCTTGTCCTGAATCTTGGCCT 71861 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | || | ||||||| || ||| || |||| ||||| ||| |||||||| || | Sbjct 71862 TCACGTTGTCGATGGTGTCGGAGGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGCG 71921 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || ||||| |||||||| Sbjct 71922 TCTTGACGAAGATCTGCAT 71940 Score = 111 bits (122), Expect = 2e-19 Identities = 118/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 ||||| ||||||||||||||| | ||||| ||||||||||| || ||||| || |||||| Sbjct 71558 TCCTCCAGCTGCTTGCCCGCGAAGATGAGACGCTGCTGGTCTGGTGGGATACCCTCCTTG 71617 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || ||||| ||| | | |||| || || | | ||| || |||| |||| | Sbjct 71618 TCCTGAATCTTGGCCTTCACGTTGTCAATTGTATCCGAAGACTCGACCTCGAGAGTGATG 71677 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCATG 133661 || |||||||| || || || ||||| ||||||||| Sbjct 71678 GTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATG 71713 >seq757 Length=325751 Score = 129 bits (142), Expect = 6e-25 Identities = 148/199 (74%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||||||||| ||||| || ||||| ||| || ||| |||||||||||||||||| Sbjct 30031 GGTGGACTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCGAGCTGCTTGCC 29972 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || || ||||||||||| || |||||||| |||||||| ||| || ||| Sbjct 29971 AGCAAAGATCAGGCGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGGATTTTGGCCTT 29912 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | || | ||||||| | |||||| || | ||||| || ||||| || || || Sbjct 29911 GACATTGTCGATGGTGTCGGATGACTCCACCTCAAGGGTGATAGTCTTGCCCGTGAGGGT 29852 Query 133643 TTTTACGAAAATCTGCATG 133661 || ||||| ||||||||| Sbjct 29851 CTTGACGAAGATCTGCATG 29833 >seq1759 Length=81252 Score = 96.9 bits (106), Expect = 3e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 ||||| ||||||||||| ||| | || | ||||||||||| || || ||||| |||||| Sbjct 66880 TCCTCAAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCAGGGGGAATGCCCTCCTTG 66939 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || |||||| ||| | | || | ||||||| | |||||| |||| ||||| Sbjct 66940 TCCTGGATCTTGGCCTTAACGTTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATA 66999 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAA 133651 || ||||| ||||| || || ||||| Sbjct 67000 GTCTTGCCCGTCAGGGTCTTCACGAA 67025 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483406792882320