Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryphonectria_20radicalis_20[genbank_20GCA_5F002179595.1_202017-06- 08] 2,318 sequences; 41,022,676 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq1 181 2e-39 seq1933 172 8e-37 seq1567 129 8e-24 >seq1 Length=275753 Score = 181 bits (200), Expect = 2e-39 Identities = 323/465 (69%), Gaps = 11/465 (2%) Strand=Plus/Minus Query 332876 CGCAGGATGGCACAACGGCTCTGCAGGGCCTCGATGACCATTGACGACGTGTTGCAGGCC 332935 |||||||| ||||| ||| |||||| | |||||||| | | ||| |||||| || Sbjct 217553 CGCAGGATCGCACACCGGGACTGCAGCGGCTCGATGATCTTGTTGGACTGGTTGCATGCG 217494 Query 332936 AGGGCAAACCGCGTCGTATTGGTATGCTTTTCCATGGTCGACCGGAGGGCCTGTTGGGCC 332995 | ||| || ||||| || |||| | | ||||| ||| ||| || ||||| || || Sbjct 217493 AAGGCGAAGCGCGTGGTGTTGGAGTAGATCTCCATCGTCCGCCGCAGTGCCTGCTGCGC- 217435 Query 332996 GCCGG-CGTGAGGCAGTCGGCCTCGTCGAGGATGATGATCTTGTGGCGCCCGTGCGGCAG 333054 |||| ||| | || |||||||||||||||||||| |||||||||||| || |||||| Sbjct 217434 GCCGCTCGTCATGCTGTCGGCCTCGTCGAGGATGACGATCTTGTGGCGGCCCGCCGGCAG 217375 Query 333055 ATCAACCCTTTTCGAGGCGTGGTGTTTGATGATCTTGCGCACGACGTCCACGCCGCGCTC 333114 ||| | ||| ||| | |||||| |||||||||||||| | |||||||| Sbjct 217374 GGTGACCTTCTTCTGTGCGAAGCCCTTGATGCGGTTGCGCACGACGTCGATACCGCGCTC 217315 Query 333115 GTCCGACGCGTTGAGTTCGAGCACGGCCTCGTCGGCGGCCGCACCCAAGAGGACGCGCGC 333174 |||||| |||||||| || || || ||||| | | || | || | || |||||| Sbjct 217314 GTCCGAGGCGTTGAGCTCCAGGACCGCCTCCTTGTATGCGTCGCCGAGCAGCTGGCGCGC 217255 Query 333175 CAGGCACGCGATGCTC----GTGGTCTTGCCCGTGCCGGGCGGACCCGCCAGCAAGAGGT 333230 |||||| || || | || |||||||| | || |||| || | | | || | Sbjct 217254 CAGGCA---GA-GCACCGAGGTCGTCTTGCCGATACCTGGCGTCCCGGAAATAATGACAT 217199 Query 333231 TGGGCATGTTGCCGTCGGCGGCCAGCGCCTTGAGGTAGGCAACGGCGTGCTCGTTGCCGA 333290 |||||| |||||||| ||| | ||||| | | || | | ||||||| Sbjct 217198 GGGGCATATTGCCGTCCTTGGCGATGATTTTGAGCCGCTCGATGGTCTCAACATTGCCGA 217139 Query 333291 CAATGTCGTCGAGCACCATTGGGCGGTACTTTTCGATCCATGGGA 333335 | ||||||||||| | | |||||||| || |||| || ||||| Sbjct 217138 CTATGTCGTCGAGGAAGACGGGGCGGTATTTCTCGA-CCCTGGGA 217095 >seq1933 Length=42650 Score = 172 bits (190), Expect = 8e-37 Identities = 274/393 (70%), Gaps = 15/393 (4%) Strand=Plus/Minus Query 259790 GTCGTCGAGCGGCCCCAGTATATGCTCATGCGTGTCGCCCTTGGCCATTATGGGTTTGCC 259849 |||||||||||||| ||| | ||||| |||||||||||| ||||| | |||| | | Sbjct 27059 GTCGTCGAGCGGCCACAGCACATGCTGATGCGTGTCGCCGTTGGCA--TCTGGGGA-GAC 27003 Query 259850 GACGTCGACAATGCGCTGGAGCACGTGCTCGCCACCTACGAGGCCATGTCGCAGCAGTTG 259909 || |||| | | |||||| |||||| | | | || | |||| Sbjct 27002 AACATCGAGAGGGTTCTGGAG------------ACCTACAACTACCTCTCCAACAAGTTC 26955 Query 259910 TTCACCTCAGCGACGCCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCG 259969 ||||| || |||| || || || || ||||||||||| | | ||| || ||| Sbjct 26954 TTCACACACGCTTCGCCGACTCTATTCAACGCCGGCACGCCTCAGGCACAGCTGTCATCG 26895 Query 259970 TGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAG 260029 ||||| || |||||||||||| ||| |||||||| ||||||||||| |||||| Sbjct 26894 TGCTTCCTAGTGGACATGAAGGAGGATAGCATCGAGGGTATCTATGACACCCTCAAGACC 26835 Query 260030 TGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCC 260089 || || | ||||||||| |||||| ||||| ||| | | ||| | || ||| Sbjct 26834 TGTGCCATGATCTCCAAGATGGCCGGAGGCATTGGTCTCAATGTCCACCGCATCCGTGCC 26775 Query 260090 GCGGGCGCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGC 260149 | ||| |||| | || |||||||||||| ||| || ||| | | |||||||| || Sbjct 26774 ACTGGCTCCTATATTGCCGGCACCAACGGCACGTCTAATGGCATCATCCCCATGCTGCGT 26715 Query 260150 GTTTTTAACGACACGGCGCGCTACGTCGACCAG 260182 || || ||| |||| || ||||||||||||||| Sbjct 26714 GTCTTCAACAACACTGCTCGCTACGTCGACCAG 26682 Score = 149 bits (164), Expect = 9e-30 Identities = 366/545 (67%), Gaps = 20/545 (4%) Strand=Plus/Minus Query 262875 CCGCTGGGACTGGGACGCACTGCGGGCGTCGGTTCGACAGCATGGCCTGCGCAACTCGTT 262934 || ||||||||||||||| ||| ||| | | ||||||||| | |||||| || Sbjct 25809 CCTCTGGGACTGGGACGCCCTGAAGGCCAAGATCAAGCAGCATGGCGTCCGCAACAGCTT 25750 Query 262935 GCTCGTGGCGCTCATGCCCACGGCCACGACGTCGCAGATCCTGGGCAACACCGAGGCGTT 262994 | | |||||| |||||||| ||| |||| ||||||||||||||||||| |||| || Sbjct 25749 GTTGATGGCGCCTATGCCCACTGCCTCGACCTCGCAGATCCTGGGCAACAACGAGTGCTT 25690 Query 262995 CGAGGTCATCACGAGCAACATCTACACGCGCCGCGTGCTCTCGGGCGACTTTACCGTGGT 263054 ||| | |||| |||||||||| ||| || |||||| | || || || ||||| Sbjct 25689 TGAGCCCTACACGTCCAACATCTACCAGCGGCGTGTGCTCGCTGGTGAGTTCCAGGTGGT 25630 Query 263055 CAACCGCCACCTGGTCAAGCGCATGGTGGCGCGCGGCCTGTGGACGCCCGACTTTCGCGA 263114 ||||| ||| ||||| | | ||| | | || |||||| | ||| | | Sbjct 25629 CAACCCATGGCTGCTCAAGGACCTTGTGCAGTGTGGTCTGTGGTCCGAGGACCTGAAGAA 25570 Query 263115 CCGGCTCATTGCGGCACAGGGCTCGGTGCAGGGCTTTGACGACGAGGAGGTGCCGCCCGA 263174 ||| |||| || | | || || | ||| | || || || | | ||| || Sbjct 25569 CCGCATCATCGCCGAGGATGGTTCTATCCAGAACATT--CG--CAGCA--TCCCGGATGA 25516 Query 263175 TCTCAAGGCTCTCTTCAAGACCGTGTGGGAGGTGCCCAACCGGGTGACCATTG---ATAT 263231 | ||||||| |||| ||||||||| |||||| | | | | |||||| | | || Sbjct 25515 TATCAAGGCCCTCTACAAGACCGTCTGGGAGAT---CTCGCAGAGGACCATCGTCCAGAT 25459 Query 263232 GGCGGCCGACCGCGCGCCCTAT-GTCGACCAGAGCCAGTCGCTCAACCTGTACCT-CGCC 263289 ||| |||||||| | || || | |||||||| ||||| || ||| | || | || Sbjct 25458 GGCCGCCGACCGTG-GCGCTTTCATCGACCAGTCTCAGTCCCTGAACATCCACATGCGTG 25400 Query 263290 GACC--CGACGGCCGAGAGCATCACGTCGATGCACGCCTATGCGTGGCGTCGCGGCCTCA 263347 ||| | | || | || |||||| |||||| | | ||| | || |||| Sbjct 25399 AACCTTCTATGGGCAAG---ATCACGAGCATGCACTTCACCGGATGGAAGCTGGGTCTCA 25343 Query 263348 AGACTGGCATGTACTATCTGCGCACCCGGCCCGCTGCCAACGCCATTCAATTCACCGTCG 263407 |||||||||||||||| || ||||||| | | || || | | ||||| ||||| |||| Sbjct 25342 AGACTGGCATGTACTACCTCCGCACCCAGGCGGCGGCAGCCCCGATTCAGTTCACAGTCG 25283 Query 263408 ATCAG 263412 | ||| Sbjct 25282 ACCAG 25278 Score = 129 bits (142), Expect = 8e-24 Identities = 336/512 (66%), Gaps = 16/512 (3%) Strand=Plus/Minus Query 261788 GGCGGCGGCAAGCGCAAGGGCGCCTTTGCCTGCTACCTGGAACCGTGGCACGCCGACCTC 261847 || ||| ||||||| || ||||||||| ||||||||| ||||||||||| || || Sbjct 26681 GGTGGCAACAAGCGCCCCGGTGCCTTTGCCATCTACCTGGAGCCGTGGCACGCTGATGTC 26622 Query 261848 ATCAACTGGCTGGACCTCAAAAAGAACCACGGCAAGGGAGGGGGAGAACCGGGCGCGCGC 261907 || | | || ||||| ||||||||||| |||| || || ||| || || | Sbjct 26621 TTCGAGTTCCTCGACCTGCGCAAGAACCACGGAAAGGAAGAGGT----CCGTGCTCGTG- 26567 Query 261908 GATCTCTTTTACGGCCTGTGGACGTGCGACCTGTTTATGCGCCGCATGGTGACCGGCCGC 261967 | ||||| | ||| |||| || || || ||| || ||| || | || Sbjct 26566 -ACCTCTTCCTGGCCCTCTGGATCCCTGATCTCTTCATGAAGCGTGTGGAGAAGAACGGC 26508 Query 261968 GACTGGTCGCTCTTTTGCCCGTCCGAGGCGCCCGGCCTGCACGAATGCTATGGCGCGGCC 262027 |||||| | || | ||||| |||| ||||||||| ||| ||||| |||| || Sbjct 26507 GACTGGACCCTTATGTGCCCCAACGAGTGTCCCGGCCTGGCCGACTGCTACGGCGAGGAG 26448 Query 262028 TTTGACGCCCTCTATGAGNNNNNNNNNNNNNNNNNNNNNNCGCGGACCGTCGTGCCCGCA 262087 || || ||| | || ||| ||||| | | | | | | Sbjct 26447 TTCGAGGCCTTGTACGAGAAGTATGAGCGCGAGGGT----CGCGGCCAGAAGACCTTGAA 26392 Query 262088 CG-ACAGA---TCTGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACAT 262143 | ||||| | |||| ||||| ||| ||| || | ||||||||||| || | ||| Sbjct 26391 GGCACAGAAGCTGTGGTATGCCATCCTCGAGGCGCAGACCGAGACCGGCAACCCATTCAT 26332 Query 262144 GGTCTACAAGGACGCCGTCAACCTGACCAGCAACCAGCAGAACCTGGGCACCA-CGACAG 262202 | | ||||||||| || ||||| | ||||||||| ||||||||||||||| | ||| Sbjct 26331 GCTGTACAAGGACCACGCCAACCGCAAGAGCAACCAGAAGAACCTGGGCACCATCCGCAG 26272 Query 262203 AGGCCAACCTGTGCACCGAGATCGTCCAGTTTTCGTCGCCCACCGAGGCAAGTGTGTGCA 262262 ||||||| ||||| |||||| || ||| || | || ||||| ||| |||| Sbjct 26271 -CTCCAACCTCTGCACGGAGATCATCGAGTACTCTGCCCCTGACGAGGTTGCTGTCTGCA 26213 Query 262263 ACCTCTCGAGCGTGGCCCTGCCCAAGTTTGTC 262294 |||| || | | |||||||| |||| ||| Sbjct 26212 ACCTGGCGTCCATCGCCCTGCCTCAGTTCGTC 26181 >seq1567 Length=91444 Score = 129 bits (142), Expect = 8e-24 Identities = 211/299 (71%), Gaps = 5/299 (2%) Strand=Plus/Plus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| | |||||| || ||| |||||| ||||| ||||| || |||||| | || | Sbjct 44687 GATCTGGCAGATGTAC-AAGAAGCACGAGGCATCCTTCTGGACTGCTGAGGAGATTGATC 44745 Query 1455835 TCGGCGCCGACACGGTCCACTGGGTGT--CGC-TGAGCGACGACGAGCGCCATTTCATCA 1455891 | | ||| | | ||||| ||| ||| | | |||||| | |||||| Sbjct 44746 TGTCCAAGGACCTGCACGACTGGAACAACCGCCTGACCAATGACGAGAAATACTTCATCT 44805 Query 1455892 AGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGC 1455951 ||| |||||||||| ||| |||||| || ||||| || ||||||| || || Sbjct 44806 CCCACATCCTCGCCTTCTTT-GCCGCCTCGGACGGCATTGTCAACGAGAACTTGATCGAG 44864 Query 1455952 CGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCC 1456011 ||||| | ||||| || | || ||||| |||| || ||||| ||||||| | Sbjct 44865 CGCTTCAGCGCTGAGGTTCAGATTCCTGAGGCCCGTTGCTTCTACGGCTTCCAGACCATG 44924 Query 1456012 ATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCC 1456070 || || ||||||||||| || || ||||| ||||||||||||||||| ||||||| || Sbjct 44925 ATGGAGAACATCCACTCCGAGACATACTCCCTCCTGATCGACACCTATATCAAGGAGCC 44983 Score = 122 bits (134), Expect = 1e-21 Identities = 184/254 (72%), Gaps = 6/254 (2%) Strand=Plus/Plus Query 1456523 ATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCG-GTGGC 1456581 |||||| || ||||| | || ||||| ||||| | | ||| | ||||| ||||| Sbjct 45359 ATCATCACGGATGCCGTTGTCATTGAGAAGGAGTTCCTGACTGAGGCCCTGCCCTGTGGC 45418 Query 1456582 GCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCGC 1456641 || ||||||||||||||||| || ||| ||||||||||| || ||||||||||| Sbjct 45419 -CTGCTCGGCATGAACGCCACC-CTGATGAAGCAGTACATTGAGTTC-GTCGCCGACCGT 45475 Query 1456642 CTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGAT 1456701 || |||| || |||||| || ||||| |||| | | ||||||| ||| | || Sbjct 45476 CTCCTCGTCGCCCTCGGCAACG-AGAAGGTCTACAAGTCTTCCAACCCCTTCGACTTCAT 45534 Query 1456702 GGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCG-TGGCGAGTACGC 1456760 |||| ||||| || | |||||||||||||| |||||| || | ||| || ||| Sbjct 45535 GGAGAACATCTCCCTTGGCGGCAAGACCAACTTCTTCGAGAAGCGTGTTGGTGACTACCA 45594 Query 1456761 CAAGGCCGGCGTCA 1456774 ||||| || |||| Sbjct 45595 GAAGGCTGGTGTCA 45608 Score = 89.7 bits (98), Expect = 7e-12 Identities = 116/156 (74%), Gaps = 7/156 (4%) Strand=Plus/Plus Query 1456123 AAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGA--GGGCCTCGACACTTTGCCGA 1456180 || |||||||||||||| ||| ||||||| | ||| ||| || || || || | Sbjct 45098 AAGAAGGCCGACTGGGCTCTGAGGTGGATCCA---GGACCGGGAGTCCAC-CTACGCGCA 45153 Query 1456181 GCGGCTCGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCAT 1456239 ||| || |||| || || || |||||||| ||||| ||| ||| ||| | |||| Sbjct 45154 GCGCCTTGTCGCATTCGCTGCCGTCGAGGGTATCTTCTTCAGCGGCGCCTTCGCCTCCAT 45213 Query 1456240 CTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275 ||| |||||||||||||| ||||| ||||| ||||| Sbjct 45214 CTTCTGGCTCAAGAAGCGTGGCCTGATGCCTGGTCT 45249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177587624639516