Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryphonectria_20radicalis_20[genbank_20GCA_5F002179595.1_202017-06-
08] 2,318 sequences; 41,022,676 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq1 181 2e-39
seq1933 172 8e-37
seq1567 129 8e-24
>seq1
Length=275753
Score = 181 bits (200), Expect = 2e-39
Identities = 323/465 (69%), Gaps = 11/465 (2%)
Strand=Plus/Minus
Query 332876 CGCAGGATGGCACAACGGCTCTGCAGGGCCTCGATGACCATTGACGACGTGTTGCAGGCC 332935
|||||||| ||||| ||| |||||| | |||||||| | | ||| |||||| ||
Sbjct 217553 CGCAGGATCGCACACCGGGACTGCAGCGGCTCGATGATCTTGTTGGACTGGTTGCATGCG 217494
Query 332936 AGGGCAAACCGCGTCGTATTGGTATGCTTTTCCATGGTCGACCGGAGGGCCTGTTGGGCC 332995
| ||| || ||||| || |||| | | ||||| ||| ||| || ||||| || ||
Sbjct 217493 AAGGCGAAGCGCGTGGTGTTGGAGTAGATCTCCATCGTCCGCCGCAGTGCCTGCTGCGC- 217435
Query 332996 GCCGG-CGTGAGGCAGTCGGCCTCGTCGAGGATGATGATCTTGTGGCGCCCGTGCGGCAG 333054
|||| ||| | || |||||||||||||||||||| |||||||||||| || ||||||
Sbjct 217434 GCCGCTCGTCATGCTGTCGGCCTCGTCGAGGATGACGATCTTGTGGCGGCCCGCCGGCAG 217375
Query 333055 ATCAACCCTTTTCGAGGCGTGGTGTTTGATGATCTTGCGCACGACGTCCACGCCGCGCTC 333114
||| | ||| ||| | |||||| |||||||||||||| | ||||||||
Sbjct 217374 GGTGACCTTCTTCTGTGCGAAGCCCTTGATGCGGTTGCGCACGACGTCGATACCGCGCTC 217315
Query 333115 GTCCGACGCGTTGAGTTCGAGCACGGCCTCGTCGGCGGCCGCACCCAAGAGGACGCGCGC 333174
|||||| |||||||| || || || ||||| | | || | || | || ||||||
Sbjct 217314 GTCCGAGGCGTTGAGCTCCAGGACCGCCTCCTTGTATGCGTCGCCGAGCAGCTGGCGCGC 217255
Query 333175 CAGGCACGCGATGCTC----GTGGTCTTGCCCGTGCCGGGCGGACCCGCCAGCAAGAGGT 333230
|||||| || || | || |||||||| | || |||| || | | | || |
Sbjct 217254 CAGGCA---GA-GCACCGAGGTCGTCTTGCCGATACCTGGCGTCCCGGAAATAATGACAT 217199
Query 333231 TGGGCATGTTGCCGTCGGCGGCCAGCGCCTTGAGGTAGGCAACGGCGTGCTCGTTGCCGA 333290
|||||| |||||||| ||| | ||||| | | || | | |||||||
Sbjct 217198 GGGGCATATTGCCGTCCTTGGCGATGATTTTGAGCCGCTCGATGGTCTCAACATTGCCGA 217139
Query 333291 CAATGTCGTCGAGCACCATTGGGCGGTACTTTTCGATCCATGGGA 333335
| ||||||||||| | | |||||||| || |||| || |||||
Sbjct 217138 CTATGTCGTCGAGGAAGACGGGGCGGTATTTCTCGA-CCCTGGGA 217095
>seq1933
Length=42650
Score = 172 bits (190), Expect = 8e-37
Identities = 274/393 (70%), Gaps = 15/393 (4%)
Strand=Plus/Minus
Query 259790 GTCGTCGAGCGGCCCCAGTATATGCTCATGCGTGTCGCCCTTGGCCATTATGGGTTTGCC 259849
|||||||||||||| ||| | ||||| |||||||||||| ||||| | |||| | |
Sbjct 27059 GTCGTCGAGCGGCCACAGCACATGCTGATGCGTGTCGCCGTTGGCA--TCTGGGGA-GAC 27003
Query 259850 GACGTCGACAATGCGCTGGAGCACGTGCTCGCCACCTACGAGGCCATGTCGCAGCAGTTG 259909
|| |||| | | |||||| |||||| | | | || | ||||
Sbjct 27002 AACATCGAGAGGGTTCTGGAG------------ACCTACAACTACCTCTCCAACAAGTTC 26955
Query 259910 TTCACCTCAGCGACGCCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCG 259969
||||| || |||| || || || || ||||||||||| | | ||| || |||
Sbjct 26954 TTCACACACGCTTCGCCGACTCTATTCAACGCCGGCACGCCTCAGGCACAGCTGTCATCG 26895
Query 259970 TGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAG 260029
||||| || |||||||||||| ||| |||||||| ||||||||||| ||||||
Sbjct 26894 TGCTTCCTAGTGGACATGAAGGAGGATAGCATCGAGGGTATCTATGACACCCTCAAGACC 26835
Query 260030 TGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCC 260089
|| || | ||||||||| |||||| ||||| ||| | | ||| | || |||
Sbjct 26834 TGTGCCATGATCTCCAAGATGGCCGGAGGCATTGGTCTCAATGTCCACCGCATCCGTGCC 26775
Query 260090 GCGGGCGCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGC 260149
| ||| |||| | || |||||||||||| ||| || ||| | | |||||||| ||
Sbjct 26774 ACTGGCTCCTATATTGCCGGCACCAACGGCACGTCTAATGGCATCATCCCCATGCTGCGT 26715
Query 260150 GTTTTTAACGACACGGCGCGCTACGTCGACCAG 260182
|| || ||| |||| || |||||||||||||||
Sbjct 26714 GTCTTCAACAACACTGCTCGCTACGTCGACCAG 26682
Score = 149 bits (164), Expect = 9e-30
Identities = 366/545 (67%), Gaps = 20/545 (4%)
Strand=Plus/Minus
Query 262875 CCGCTGGGACTGGGACGCACTGCGGGCGTCGGTTCGACAGCATGGCCTGCGCAACTCGTT 262934
|| ||||||||||||||| ||| ||| | | ||||||||| | |||||| ||
Sbjct 25809 CCTCTGGGACTGGGACGCCCTGAAGGCCAAGATCAAGCAGCATGGCGTCCGCAACAGCTT 25750
Query 262935 GCTCGTGGCGCTCATGCCCACGGCCACGACGTCGCAGATCCTGGGCAACACCGAGGCGTT 262994
| | |||||| |||||||| ||| |||| ||||||||||||||||||| |||| ||
Sbjct 25749 GTTGATGGCGCCTATGCCCACTGCCTCGACCTCGCAGATCCTGGGCAACAACGAGTGCTT 25690
Query 262995 CGAGGTCATCACGAGCAACATCTACACGCGCCGCGTGCTCTCGGGCGACTTTACCGTGGT 263054
||| | |||| |||||||||| ||| || |||||| | || || || |||||
Sbjct 25689 TGAGCCCTACACGTCCAACATCTACCAGCGGCGTGTGCTCGCTGGTGAGTTCCAGGTGGT 25630
Query 263055 CAACCGCCACCTGGTCAAGCGCATGGTGGCGCGCGGCCTGTGGACGCCCGACTTTCGCGA 263114
||||| ||| ||||| | | ||| | | || |||||| | ||| | |
Sbjct 25629 CAACCCATGGCTGCTCAAGGACCTTGTGCAGTGTGGTCTGTGGTCCGAGGACCTGAAGAA 25570
Query 263115 CCGGCTCATTGCGGCACAGGGCTCGGTGCAGGGCTTTGACGACGAGGAGGTGCCGCCCGA 263174
||| |||| || | | || || | ||| | || || || | | ||| ||
Sbjct 25569 CCGCATCATCGCCGAGGATGGTTCTATCCAGAACATT--CG--CAGCA--TCCCGGATGA 25516
Query 263175 TCTCAAGGCTCTCTTCAAGACCGTGTGGGAGGTGCCCAACCGGGTGACCATTG---ATAT 263231
| ||||||| |||| ||||||||| |||||| | | | | |||||| | | ||
Sbjct 25515 TATCAAGGCCCTCTACAAGACCGTCTGGGAGAT---CTCGCAGAGGACCATCGTCCAGAT 25459
Query 263232 GGCGGCCGACCGCGCGCCCTAT-GTCGACCAGAGCCAGTCGCTCAACCTGTACCT-CGCC 263289
||| |||||||| | || || | |||||||| ||||| || ||| | || | ||
Sbjct 25458 GGCCGCCGACCGTG-GCGCTTTCATCGACCAGTCTCAGTCCCTGAACATCCACATGCGTG 25400
Query 263290 GACC--CGACGGCCGAGAGCATCACGTCGATGCACGCCTATGCGTGGCGTCGCGGCCTCA 263347
||| | | || | || |||||| |||||| | | ||| | || ||||
Sbjct 25399 AACCTTCTATGGGCAAG---ATCACGAGCATGCACTTCACCGGATGGAAGCTGGGTCTCA 25343
Query 263348 AGACTGGCATGTACTATCTGCGCACCCGGCCCGCTGCCAACGCCATTCAATTCACCGTCG 263407
|||||||||||||||| || ||||||| | | || || | | ||||| ||||| ||||
Sbjct 25342 AGACTGGCATGTACTACCTCCGCACCCAGGCGGCGGCAGCCCCGATTCAGTTCACAGTCG 25283
Query 263408 ATCAG 263412
| |||
Sbjct 25282 ACCAG 25278
Score = 129 bits (142), Expect = 8e-24
Identities = 336/512 (66%), Gaps = 16/512 (3%)
Strand=Plus/Minus
Query 261788 GGCGGCGGCAAGCGCAAGGGCGCCTTTGCCTGCTACCTGGAACCGTGGCACGCCGACCTC 261847
|| ||| ||||||| || ||||||||| ||||||||| ||||||||||| || ||
Sbjct 26681 GGTGGCAACAAGCGCCCCGGTGCCTTTGCCATCTACCTGGAGCCGTGGCACGCTGATGTC 26622
Query 261848 ATCAACTGGCTGGACCTCAAAAAGAACCACGGCAAGGGAGGGGGAGAACCGGGCGCGCGC 261907
|| | | || ||||| ||||||||||| |||| || || ||| || || |
Sbjct 26621 TTCGAGTTCCTCGACCTGCGCAAGAACCACGGAAAGGAAGAGGT----CCGTGCTCGTG- 26567
Query 261908 GATCTCTTTTACGGCCTGTGGACGTGCGACCTGTTTATGCGCCGCATGGTGACCGGCCGC 261967
| ||||| | ||| |||| || || || ||| || ||| || | ||
Sbjct 26566 -ACCTCTTCCTGGCCCTCTGGATCCCTGATCTCTTCATGAAGCGTGTGGAGAAGAACGGC 26508
Query 261968 GACTGGTCGCTCTTTTGCCCGTCCGAGGCGCCCGGCCTGCACGAATGCTATGGCGCGGCC 262027
|||||| | || | ||||| |||| ||||||||| ||| ||||| |||| ||
Sbjct 26507 GACTGGACCCTTATGTGCCCCAACGAGTGTCCCGGCCTGGCCGACTGCTACGGCGAGGAG 26448
Query 262028 TTTGACGCCCTCTATGAGNNNNNNNNNNNNNNNNNNNNNNCGCGGACCGTCGTGCCCGCA 262087
|| || ||| | || ||| ||||| | | | | | |
Sbjct 26447 TTCGAGGCCTTGTACGAGAAGTATGAGCGCGAGGGT----CGCGGCCAGAAGACCTTGAA 26392
Query 262088 CG-ACAGA---TCTGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACAT 262143
| ||||| | |||| ||||| ||| ||| || | ||||||||||| || | |||
Sbjct 26391 GGCACAGAAGCTGTGGTATGCCATCCTCGAGGCGCAGACCGAGACCGGCAACCCATTCAT 26332
Query 262144 GGTCTACAAGGACGCCGTCAACCTGACCAGCAACCAGCAGAACCTGGGCACCA-CGACAG 262202
| | ||||||||| || ||||| | ||||||||| ||||||||||||||| | |||
Sbjct 26331 GCTGTACAAGGACCACGCCAACCGCAAGAGCAACCAGAAGAACCTGGGCACCATCCGCAG 26272
Query 262203 AGGCCAACCTGTGCACCGAGATCGTCCAGTTTTCGTCGCCCACCGAGGCAAGTGTGTGCA 262262
||||||| ||||| |||||| || ||| || | || ||||| ||| ||||
Sbjct 26271 -CTCCAACCTCTGCACGGAGATCATCGAGTACTCTGCCCCTGACGAGGTTGCTGTCTGCA 26213
Query 262263 ACCTCTCGAGCGTGGCCCTGCCCAAGTTTGTC 262294
|||| || | | |||||||| |||| |||
Sbjct 26212 ACCTGGCGTCCATCGCCCTGCCTCAGTTCGTC 26181
>seq1567
Length=91444
Score = 129 bits (142), Expect = 8e-24
Identities = 211/299 (71%), Gaps = 5/299 (2%)
Strand=Plus/Plus
Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834
||| ||| | |||||| || ||| |||||| ||||| ||||| || |||||| | || |
Sbjct 44687 GATCTGGCAGATGTAC-AAGAAGCACGAGGCATCCTTCTGGACTGCTGAGGAGATTGATC 44745
Query 1455835 TCGGCGCCGACACGGTCCACTGGGTGT--CGC-TGAGCGACGACGAGCGCCATTTCATCA 1455891
| | ||| | | ||||| ||| ||| | | |||||| | ||||||
Sbjct 44746 TGTCCAAGGACCTGCACGACTGGAACAACCGCCTGACCAATGACGAGAAATACTTCATCT 44805
Query 1455892 AGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGC 1455951
||| |||||||||| ||| |||||| || ||||| || ||||||| || ||
Sbjct 44806 CCCACATCCTCGCCTTCTTT-GCCGCCTCGGACGGCATTGTCAACGAGAACTTGATCGAG 44864
Query 1455952 CGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCC 1456011
||||| | ||||| || | || ||||| |||| || ||||| ||||||| |
Sbjct 44865 CGCTTCAGCGCTGAGGTTCAGATTCCTGAGGCCCGTTGCTTCTACGGCTTCCAGACCATG 44924
Query 1456012 ATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCC 1456070
|| || ||||||||||| || || ||||| ||||||||||||||||| ||||||| ||
Sbjct 44925 ATGGAGAACATCCACTCCGAGACATACTCCCTCCTGATCGACACCTATATCAAGGAGCC 44983
Score = 122 bits (134), Expect = 1e-21
Identities = 184/254 (72%), Gaps = 6/254 (2%)
Strand=Plus/Plus
Query 1456523 ATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCG-GTGGC 1456581
|||||| || ||||| | || ||||| ||||| | | ||| | ||||| |||||
Sbjct 45359 ATCATCACGGATGCCGTTGTCATTGAGAAGGAGTTCCTGACTGAGGCCCTGCCCTGTGGC 45418
Query 1456582 GCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCGC 1456641
|| ||||||||||||||||| || ||| ||||||||||| || |||||||||||
Sbjct 45419 -CTGCTCGGCATGAACGCCACC-CTGATGAAGCAGTACATTGAGTTC-GTCGCCGACCGT 45475
Query 1456642 CTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGAT 1456701
|| |||| || |||||| || ||||| |||| | | ||||||| ||| | ||
Sbjct 45476 CTCCTCGTCGCCCTCGGCAACG-AGAAGGTCTACAAGTCTTCCAACCCCTTCGACTTCAT 45534
Query 1456702 GGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCG-TGGCGAGTACGC 1456760
|||| ||||| || | |||||||||||||| |||||| || | ||| || |||
Sbjct 45535 GGAGAACATCTCCCTTGGCGGCAAGACCAACTTCTTCGAGAAGCGTGTTGGTGACTACCA 45594
Query 1456761 CAAGGCCGGCGTCA 1456774
||||| || ||||
Sbjct 45595 GAAGGCTGGTGTCA 45608
Score = 89.7 bits (98), Expect = 7e-12
Identities = 116/156 (74%), Gaps = 7/156 (4%)
Strand=Plus/Plus
Query 1456123 AAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGA--GGGCCTCGACACTTTGCCGA 1456180
|| |||||||||||||| ||| ||||||| | ||| ||| || || || || |
Sbjct 45098 AAGAAGGCCGACTGGGCTCTGAGGTGGATCCA---GGACCGGGAGTCCAC-CTACGCGCA 45153
Query 1456181 GCGGCTCGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCAT 1456239
||| || |||| || || || |||||||| ||||| ||| ||| ||| | ||||
Sbjct 45154 GCGCCTTGTCGCATTCGCTGCCGTCGAGGGTATCTTCTTCAGCGGCGCCTTCGCCTCCAT 45213
Query 1456240 CTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275
||| |||||||||||||| ||||| ||||| |||||
Sbjct 45214 CTTCTGGCTCAAGAAGCGTGGCCTGATGCCTGGTCT 45249
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7177587624639516
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