Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryphonectria_20radicalis_20[genbank_20GCA_5F002179595.1_202017-06- 08] 2,318 sequences; 41,022,676 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq757 116 3e-21 seq1759 104 2e-17 seq1543 102 7e-17 >seq757 Length=325751 Score = 116 bits (128), Expect = 3e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| ||||||||||| |||| || ||| || |||| || |||||||| || ||||| Sbjct 30025 CTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCGAGCTGCTTGCCAGCAAA 29966 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| ||||||||||| | || | || |||||||||| ||| || ||| | | | Sbjct 29965 GATCAGGCGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGGATTTTGGCCTTGACATT 29906 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | |||||| || |||||||| | ||||| || || ||||| | || || || Sbjct 29905 GTCGATGGTGTCGGATGACTCCACCTCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTGAC 29846 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 29845 GAAGATCTGCAT 29834 >seq1759 Length=81252 Score = 104 bits (114), Expect = 2e-17 Identities = 142/196 (72%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 35533 ATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTG 35592 ||||| |||| |||| || |||||||| |||| | || || | || || ||||| Sbjct 66831 ATGTACACTACTGACCTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCATCCTCAAGCTG 66890 Query 35593 CTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTT 35652 ||| || || || ||||| ||||||||||| | |||| || |||||||||| |||| | Sbjct 66891 CTTGCCGGCGAAGATCAATCGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCCTGGATC-T 66949 Query 35653 TTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCG 35711 | || | | |||| | | |||||| || |||||||| | ||||| || || |||| Sbjct 66950 TGGCCTTAACGTTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATAGTCTTGCCCG 67009 Query 35712 TCAAAGTTTTCACAAA 35727 ||| || ||||| || Sbjct 67010 TCAGGGTCTTCACGAA 67025 >seq1543 Length=161075 Score = 102 bits (112), Expect = 7e-17 Identities = 140/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| |||| | ||| || |||| || |||||||| || || || Sbjct 71977 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 72036 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| ||||||||||| | ||| | || |||||||||| ||||| ||||| || Sbjct 72037 AATCAGGCGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTGAATCTTGGCCTTCA-CGT 72095 Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723 || | | |||||| || || ||||| | ||||| || || || || | || || | Sbjct 72096 TGTCGATGGTGTCGGAGGACTCGACCTCAAGAGTGATGGTCTTGCCGGTGAGGGTCTTGA 72155 Query 35724 CAAATATCTGCAT 35736 | || |||||||| Sbjct 72156 CGAAGATCTGCAT 72168 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 35509 TCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGC 35568 ||||||||| | | || |||||| || | ||| |||||| ||||||||||| || | Sbjct 71485 TCCACCACGCAGACGCAGCACCAAGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCTGA 71544 Query 35569 CAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGG 35628 | || || | || ||||||||||| ||||| || || | ||||||||||| | || Sbjct 71545 GAGTGTCCGGCCATCCTCCAGCTGCTTGCCCGCGAAGATGAGACGCTGCTGGTCTGGTGG 71604 Query 35629 AACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCA 35687 | | |||||||||| ||||| ||||| |||| | | || || || || | Sbjct 71605 GATACCCTCCTTGTCCTGAATCTTGGCCTTCA-CGTTGTCAATTGTATCCGAAGACTCGA 71663 Query 35688 CCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| | ||||| || || || || | || || || || |||||||| Sbjct 71664 CCTCGAGAGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 71712 Score = 93.3 bits (102), Expect = 4e-14 Identities = 138/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| |||| | ||| || |||| || |||||||| || ||||| Sbjct 71749 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTACGGCCGTCCTCGAGCTGCTTTCCAGCAAA 71808 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | ||||||||||| | || | | |||||||||| ||||| ||||| || Sbjct 71809 GATGAGGCGCTGCTGGTCTGGGGGGATACCCTCCTTGTCCTGAATCTTGGCCTTCA-CGT 71867 Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723 || | | |||||| || || ||||| | ||||| || || || || | || || | Sbjct 71868 TGTCGATGGTGTCGGAGGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGCGTCTTGA 71927 Query 35724 CAAATATCTGCAT 35736 | || |||||||| Sbjct 71928 CGAAGATCTGCAT 71940 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450780538255440