Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryphonectria_20radicalis_20[genbank_20GCA_5F002179595.1_202017-06-
08] 2,318 sequences; 41,022,676 total letters
Query= NC_026511.1
Length=140913
Score E
Sequences producing significant alignments: (Bits) Value
seq757 116 3e-21
seq1759 104 2e-17
seq1543 102 7e-17
>seq757
Length=325751
Score = 116 bits (128), Expect = 3e-21
Identities = 141/192 (73%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604
|||||| ||||||||||| |||| || ||| || |||| || |||||||| || |||||
Sbjct 30025 CTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCGAGCTGCTTGCCAGCAAA 29966
Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664
|||| ||||||||||| | || | || |||||||||| ||| || ||| | | |
Sbjct 29965 GATCAGGCGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGGATTTTGGCCTTGACATT 29906
Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724
| | |||||| || |||||||| | ||||| || || ||||| | || || ||
Sbjct 29905 GTCGATGGTGTCGGATGACTCCACCTCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTGAC 29846
Query 35725 AAATATCTGCAT 35736
|| ||||||||
Sbjct 29845 GAAGATCTGCAT 29834
>seq1759
Length=81252
Score = 104 bits (114), Expect = 2e-17
Identities = 142/196 (72%), Gaps = 2/196 (1%)
Strand=Plus/Plus
Query 35533 ATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTG 35592
||||| |||| |||| || |||||||| |||| | || || | || || |||||
Sbjct 66831 ATGTACACTACTGACCTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCATCCTCAAGCTG 66890
Query 35593 CTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTT 35652
||| || || || ||||| ||||||||||| | |||| || |||||||||| |||| |
Sbjct 66891 CTTGCCGGCGAAGATCAATCGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCCTGGATC-T 66949
Query 35653 TTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCG 35711
| || | | |||| | | |||||| || |||||||| | ||||| || || ||||
Sbjct 66950 TGGCCTTAACGTTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATAGTCTTGCCCG 67009
Query 35712 TCAAAGTTTTCACAAA 35727
||| || ||||| ||
Sbjct 67010 TCAGGGTCTTCACGAA 67025
>seq1543
Length=161075
Score = 102 bits (112), Expect = 7e-17
Identities = 140/193 (73%), Gaps = 2/193 (1%)
Strand=Plus/Plus
Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604
|||||| || |||||||| |||| | ||| || |||| || |||||||| || || ||
Sbjct 71977 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 72036
Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664
|||| ||||||||||| | ||| | || |||||||||| ||||| ||||| ||
Sbjct 72037 AATCAGGCGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTGAATCTTGGCCTTCA-CGT 72095
Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723
|| | | |||||| || || ||||| | ||||| || || || || | || || |
Sbjct 72096 TGTCGATGGTGTCGGAGGACTCGACCTCAAGAGTGATGGTCTTGCCGGTGAGGGTCTTGA 72155
Query 35724 CAAATATCTGCAT 35736
| || ||||||||
Sbjct 72156 CGAAGATCTGCAT 72168
Score = 95.1 bits (104), Expect = 1e-14
Identities = 160/229 (70%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 35509 TCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGC 35568
||||||||| | | || |||||| || | ||| |||||| ||||||||||| || |
Sbjct 71485 TCCACCACGCAGACGCAGCACCAAGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCTGA 71544
Query 35569 CAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGG 35628
| || || | || ||||||||||| ||||| || || | ||||||||||| | ||
Sbjct 71545 GAGTGTCCGGCCATCCTCCAGCTGCTTGCCCGCGAAGATGAGACGCTGCTGGTCTGGTGG 71604
Query 35629 AACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCA 35687
| | |||||||||| ||||| ||||| |||| | | || || || || |
Sbjct 71605 GATACCCTCCTTGTCCTGAATCTTGGCCTTCA-CGTTGTCAATTGTATCCGAAGACTCGA 71663
Query 35688 CCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736
|||| | ||||| || || || || | || || || || ||||||||
Sbjct 71664 CCTCGAGAGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 71712
Score = 93.3 bits (102), Expect = 4e-14
Identities = 138/193 (72%), Gaps = 2/193 (1%)
Strand=Plus/Plus
Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604
|||||| || |||||||| |||| | ||| || |||| || |||||||| || |||||
Sbjct 71749 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTACGGCCGTCCTCGAGCTGCTTTCCAGCAAA 71808
Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664
|| | ||||||||||| | || | | |||||||||| ||||| ||||| ||
Sbjct 71809 GATGAGGCGCTGCTGGTCTGGGGGGATACCCTCCTTGTCCTGAATCTTGGCCTTCA-CGT 71867
Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723
|| | | |||||| || || ||||| | ||||| || || || || | || || |
Sbjct 71868 TGTCGATGGTGTCGGAGGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGCGTCTTGA 71927
Query 35724 CAAATATCTGCAT 35736
| || ||||||||
Sbjct 71928 CGAAGATCTGCAT 71940
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 450780538255440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |