Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryphonectria_20radicalis_20[genbank_20GCA_5F002179595.1_202017-06-
08] 2,318 sequences; 41,022,676 total letters
Query= NC_026922.1
Length=157977
Score E
Sequences producing significant alignments: (Bits) Value
seq1543 132 5e-26
seq757 132 5e-26
seq1759 84.2 2e-11
>seq1543
Length=161075
Score = 132 bits (146), Expect = 5e-26
Identities = 157/213 (74%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564
|| ||||| || ||||| ||||| || |||||||||||| | |||| | ||| |||
Sbjct 71960 ACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCG 72019
Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624
||||| ||||| || ||||||| |||||||| || || || ||||| || || || |||
Sbjct 72020 AGCTGCTTGCCGGCGAAAATCAGGCGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTGA 72079
Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684
|| || || || ||| | |||||||| || || || || ||||| ||||| ||
Sbjct 72080 ATCTTGGCCTTCACGTTGTCGATGGTGTCGGAGGACTCGACCTCAAGAGTGATGGTCTTG 72139
Query 134685 CCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717
||||| | || || ||||| || ||||| |||
Sbjct 72140 CCGGTGAGGGTCTTGACGAAGATCTGCATCTTG 72172
Score = 113 bits (124), Expect = 5e-20
Identities = 161/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546
|| || | ||| || | |||||||| || || || ||||| || ||||||||||||
Sbjct 71714 CCACCGCGGAGGCGAAGGACGAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAG 71773
Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606
| ||| | ||| |||||||| || || ||||| || | |||||||| || || ||
Sbjct 71774 AGGGTACGGCCGTCCTCGAGCTGCTTTCCAGCAAAGATGAGGCGCTGCTGGTCTGGGGGG 71833
Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666
|| || || || || ||||| || || || ||| | |||||||| || || ||
Sbjct 71834 ATACCCTCCTTGTCCTGAATCTTGGCCTTCACGTTGTCGATGGTGTCGGAGGACTCGACC 71893
Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713
||||| || ||||| || ||||| | || || ||||| || |||||
Sbjct 71894 TCGAGGGTGATGGTCTTGCCGGTGAGCGTCTTGACGAAGATCTGCAT 71940
Score = 105 bits (116), Expect = 7e-18
Identities = 162/231 (70%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 134483 CTTTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC 134542
|| ||| || | || |||| ||| | ||| ||||| || ||||| ||||||||||||||
Sbjct 71482 CTGTCCACCACGCAGACGCAGCACCAAGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTC 71541
Query 134543 GCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGG 134602
| || | || || ||||| ||||| || || || | ||||||||| || ||
Sbjct 71542 TGAGAGTGTCCGGCCATCCTCCAGCTGCTTGCCCGCGAAGATGAGACGCTGCTGGTCTGG 71601
Query 134603 CGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTC 134662
|| || || || || || ||||| || || || ||| | ||| || || || ||
Sbjct 71602 TGGGATACCCTCCTTGTCCTGAATCTTGGCCTTCACGTTGTCAATTGTATCCGAAGACTC 71661
Query 134663 CACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713
|| |||||||| ||||| || ||||| | || || ||||| || |||||
Sbjct 71662 GACCTCGAGAGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 71712
>seq757
Length=325751
Score = 132 bits (146), Expect = 5e-26
Identities = 160/218 (73%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555
|| |||| || ||||| || ||||| ||||| ||||||||||||||| | |||| |
Sbjct 30051 AGGCGCAGGACCAGGTGCAGGGTGGACTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGG 29992
Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615
||| |||||||| ||||| ||||| |||| |||||||| || || || ||||| ||
Sbjct 29991 CCGTCCTCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCTGGGGGGATGCCCTCC 29932
Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675
|| || || ||||| ||||| ||| | |||||||| || ||||| || || ||
Sbjct 29931 TTGTCCTGGATTTTGGCCTTGACATTGTCGATGGTGTCGGATGACTCCACCTCAAGGGTG 29872
Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713
|| || || || || | || || ||||| || |||||
Sbjct 29871 ATAGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 29834
>seq1759
Length=81252
Score = 84.2 bits (92), Expect = 2e-11
Identities = 127/181 (70%), Gaps = 0/181 (0%)
Strand=Plus/Plus
Query 134524 CCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAA 134583
|||| || |||||||||||| | ||| | || || ||||| ||||| || || |
Sbjct 66845 CCTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAGA 66904
Query 134584 TCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGT 134643
|||| |||||||| || || || ||||| || || || || || || || || ||
Sbjct 66905 TCAATCGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTAACGTTGT 66964
Query 134644 CCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGA 134703
| | |||||||| || ||||| ||||| || || || || || || | || || ||||
Sbjct 66965 CGATGGTGTCGGAAGACTCCACCTCGAGGGTGATAGTCTTGCCCGTCAGGGTCTTCACGA 67024
Query 134704 A 134704
|
Sbjct 67025 A 67025
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 505383756081360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |