Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryphonectria_20radicalis_20[genbank_20GCA_5F002179595.1_202017-06-
08] 2,318 sequences; 41,022,676 total letters
Query= NC_028091.1
Length=196300
Score E
Sequences producing significant alignments: (Bits) Value
seq1933 230 3e-55
seq1057 96.9 4e-15
>seq1933
Length=42650
Score = 230 bits (254), Expect = 3e-55
Identities = 1131/1774 (64%), Gaps = 36/1774 (2%)
Strand=Plus/Plus
Query 110331 TGAACTGAATTGGTCGGGCTTTCGCCTTTGATCGGAGATAGTACATCCCGGTCTTGAGTC 110390
|||||||||| || || ||||| | ||||| |||||||| || |||||||| |
Sbjct 25289 TGAACTGAATCGGGGCTGCCGCCGCCTGGGTGCGGAGGTAGTACATGCCAGTCTTGAGAC 25348
Query 110391 CTTGTTTCCATGCGTACATATGCATAGAAGAGAGCTTGGACATCGTTGGACTTTC---CA 110447
| | |||||| || | ||||| | || |||| ||| | || ||| ||
Sbjct 25349 CCAGCTTCCATCCGGTGAAGTGCATGCTCGTGATCTTGCCCATAGAAGG---TTCACGCA 25405
Query 110448 TGAAGAGGTTCAT--ACTTTGACTTTGGTCAATGAA-GCGCCCCCGTTGTGCCGCCATAT 110504
|| || ||||| ||| |||| |||| ||||| ||||| | || | || ||||| |
Sbjct 25406 TGTGGATGTTCAGGGACTGAGACT--GGTCGATGAAAGCGCCACGGTCG-GCGGCCATCT 25462
Query 110505 CAATGACATCCTTCATCTTAATTTCCCAAACTGTGCGATAGAGATTCTTGATATCATCTG 110564
| || | || | || ||||| || || ||||| |||||||||||| |
Sbjct 25463 GGACGATGGTCCTCTGCGAGATCTCCCAGACGGTCTTGTAGAGGGCCTTGATATCATCCG 25522
Query 110565 GGATATCTGAG-ATATTCTGGATGGAACCCCCCGCCTTCACCATGAGATCCTTCATATCC 110623
|||| ||| | || |||||||| ||||| || | | ||| | | ||||| |||
Sbjct 25523 GGAT-GCTGCGAATGTTCTGGATAGAACCATCCTCGGCGATGATGCGGTTCTTCAGGTCC 25581
Query 110624 TTGGACCAGAGACCAATCTTCTTGAGGTCATTGACGAGGTGCTTGTTGACAATGACAAAC 110683
| |||||| |||||| || | ||||| |||| || |||||| | |||
Sbjct 25582 TCGGACCACAGACCACACTGCACAAGGTCCTTGAGCAGCCATGGGTTGACCACCTGGAAC 25641
Query 110684 TCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTA 110743
||||| ||||| | | | |||||||||| | ||||| || |||||||| || ||
Sbjct 25642 TCACCAGCGAGCACACGCCGCTGGTAGATGTTGGACGTGTAGGGCTCAAAGCACTCGTTG 25701
Query 110744 TTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGA 110803
|| |||| ||| || | ||| ||||| || ||||| || |||||||| | ||||| ||
Sbjct 25702 TTGCCCAGGATCTGCGAGGTCGAGGCAGTGGGCATAGGCGCCATCAACAAGCTGTTGCGG 25761
Query 110804 AGACCCTTCTCCTTGATGCGTTCCTTGAGAACATCCCAGTCGTAGTTGAGC-TTGGTTTC 110862
| || | || |||||| |||| || | |||||||| || | | || ||
Sbjct 25762 ACGCCATGCTGCTTGATCTTGGCCTTCAGGGCGTCCCAGTCCCAGAGGTCCGAGGGCTTG 25821
Query 110863 ACCT--TCCCACATGTCAAACTGAAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTT 110920
|| | ||||||||||| ||||||| | || || || ||||||| ||||| | |
Sbjct 25822 ACGTTGTCCCACATGTCGTACTGAAGGATACCCTGAGAAACGGGAGATCCCTCGTACGAC 25881
Query 110921 TCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATG 110980
|||| ||| | | | || | || || || |||| ||||| || |||
Sbjct 25882 AAGTAGGGACCGTCCACCTTGGCAATGTCGCACGATGCGGTGAGGGCGGCGTGGTAGATG 25941
Query 110981 GTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCAC 111040
|| |||||||| | |||| || ||| ||| || || || | ||||
Sbjct 25942 GTCTCAAAGATCTGCTTGTTCAGCTGACGGGCCTCAGGCGACTCGAAGGGCAGGCGGAGA 26001
Query 111041 AAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTA 111100
| || |||| || ||||| ||||| |||| || ||||| | ||| ||||| ||
Sbjct 26002 GCCAAGAAGGCATCAGCCAGACCCTGAACGCCCACGCCGATAGGGCGGTGGCGCATGTTG 26061
Query 111101 GACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTG 111160
|| || || || || ||||| | || | || | || ||| || || |
Sbjct 26062 CTGTTGCGAGCCTCCTGGACAGGATAGTAGTTGATATCGACGATCTTGTTCAGGTTGCGG 26121
Query 111161 GTAACAATCTTTGTGATTTCATGAAGTTTTTCATAAT--CAAAAGTGCGAGTCTCTTCAT 111218
|||| | |||| ||| || || | | | | ||| || |||| | |
Sbjct 26122 ACGACAACTTGGGTGACTTCGTGCAGCAGCTGGAAGTTGTAGCAGT-CG-TTCTCATAGT 26179
Query 111219 TGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTG 111278
||| ||| || |||||||| || |||| ||||| ||||| ||| || | |
Sbjct 26180 CGACGAACTGAGGCAGGGCGATGGACGCCAGGTTGCAGACAGCAACCTCGTCAGGGGCAG 26239
Query 111279 TGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGT 111338
|||||| | || || || || | |||||| || || || |||| ||||| ||||
Sbjct 26240 AGTACTCGATGATCTCCGTGCAGAGGTTGGAGCTGCGGATGGTGCCCAGGTTCTTCTGGT 26299
Query 111339 TACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTG 111398
| ||||| |||| |||||||| |||||| | || | || ||||| ||||| |
Sbjct 26300 TGCTCTTGCGGTTGGCGTGGTCCTTGTACAGCATGAATGGGTTGCCGGTCTCGGTCTGCG 26359
Query 111399 ATTTGAGAATAGCCTTCCA-AACATCGGCGGCTGGTACAATGGCGT-TGGCC-CGTCCCT 111455
| ||| || || | ||| | | || | | | | ||| | | | ||||| || ||||
Sbjct 26360 CCTCGAGGATGGCATACCACAGCTTCTGTGCC---TTCAAGGTCTTCTGGCCGCGACCCT 26416
Query 111456 CCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTG 111515
| ||| ||||| ||| | ||| || |||||||| || ||||| || || |
Sbjct 26417 CGCGCTCATACTTCTCGTACAAGGCCTCGAACTCCTCGCCGTAGCAGTCGGCCAGGCCGG 26476
Query 111516 GTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAA 111575
| || || || || | ||| | ||| | || | ||| || ||||||||||| |
Sbjct 26477 GACACTCGTTGGGGCACATAAGGGTCCAGTCGCCGTTCTTCTCCACACGCTTCATGAAGA 26536
Query 111576 GGTCTGGAATCCACAGGGATGAAAAGAGATCTCTA-CACCGAGCCTCTTCGTCACCTTGG 111634
| || || ||||| |||| ||||| || | | ||| || ||||||| | || |||
Sbjct 26537 GATCAGGGATCCAGAGGGCCAGGAAGAGGTCACGAGCACGGA-CCTCTTCCTTTCCGTGG 26595
Query 111635 TTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCG 111694
|| || | || |||||||| | || ||| |||||||| ||||| || |||| ||
Sbjct 26596 TTCTTGCGCAGGTCGAGGAACTCGAAGACATCAGCGTGCCACGGCTCCAGGTAGATGGCA 26655
Query 111695 ATAGATCC----CTTTCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATAC 111750
| | || | | | | ||| | || | || ||||| || ||| ||| || ||
Sbjct 26656 AAGGCACCGGGGCGCTTGTTG-CCACCCTGGTCGACGTAGCGAGCAGTGTTGTTGAAGAC 26714
Query 111751 GCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATT 111810
|| ||||| || || || |||| || || || || || |||| || | |
Sbjct 26715 ACGCAGCATGGGGATGATGCCATTAGACGTGCCGTTGGTGCCGGCAATATAGGAGCCAGT 26774
Query 111811 GGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACA 111870
||| | | |||| | | ||||| || || ||| ||| ||||| |||||
Sbjct 26775 GGCACGGATGCGGTGGACATTGAGACCAATGCCTCCGGCCATCTTGGAGATCATGGCACA 26834
Query 111871 CTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCA 111930
| | || || |||||||||| | ||| |||||||| || | | ||||||||
Sbjct 26835 GGTCTTGAGGGTGTCATAGATACCCTCGATGCTATCCTCCTTCATGTCCACTAGGAAGCA 26894
Query 111931 ACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAA 111990
|||| ||| | || || || || ||||| || || || | ||||| ||||
Sbjct 26895 CGATGACAGCTGTGCCTGAGGCGTGCCGGCGTTGAATAGAGTCGGCGAAGCGTGTGTGAA 26954
Query 111991 CATACCT-TGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGA 112049
| || | | ||| | | || ||| ||||||| || || |||| || || ||
Sbjct 26955 GA-ACTTGTTGGAGAGGTAGTTGTAGGTCTCCAGAACCCTCTCGATGTTGTCTCCCCAGA 27013
Query 112050 TGCCGATTGCGACCCGCATGAACATGTACTGTGG 112083
|||| | ||||| ||||| | ||||| ||||||
Sbjct 27014 TGCCAACGGCGACACGCATCAGCATGTGCTGTGG 27047
>seq1057
Length=53502
Score = 96.9 bits (106), Expect = 4e-15
Identities = 159/226 (70%), Gaps = 4/226 (2%)
Strand=Plus/Plus
Query 11630 GCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGA 11689
||||||||||| ||||||||||| || || || || | ||||| |||||||
Sbjct 21603 GCATCAATCTCGTCAATGAAGACGATGCAGGGCGCGTTCTTCCGGGCCTGCGCAAAGAGG 21662
Query 11690 TCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGT--TTGCGGCAGAGC 11747
||||| || || |||||| ||||| ||||||||||| || || | || || || |
Sbjct 21663 TCGCGCACTCTCGAGGCACCGACACCGACAAACATCTCGACGAATTCGGAGCCGCTGA-C 21721
Query 11748 ACTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCG 11807
||| || ||| || || || ||||| ||| | || |||||| || ||||| || |
Sbjct 21722 ACT-GAAGAACGGCACGCCCGACTCACCGGCGGTCGCCTTGGCGAGCAGCGTCTTACCAG 21780
Query 11808 TACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACC 11853
|||| ||| || | | | |||||| || || |||||||| ||
Sbjct 21781 TACCGGGCGGGCCAGACAAGATGGCGCCACGCGGAATCTTGGCGCC 21826
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 628013802772800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |