Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryphonectria_20radicalis_20[genbank_20GCA_5F002179595.1_202017-06- 08] 2,318 sequences; 41,022,676 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq1933 230 3e-55 seq1057 96.9 4e-15 >seq1933 Length=42650 Score = 230 bits (254), Expect = 3e-55 Identities = 1131/1774 (64%), Gaps = 36/1774 (2%) Strand=Plus/Plus Query 110331 TGAACTGAATTGGTCGGGCTTTCGCCTTTGATCGGAGATAGTACATCCCGGTCTTGAGTC 110390 |||||||||| || || ||||| | ||||| |||||||| || |||||||| | Sbjct 25289 TGAACTGAATCGGGGCTGCCGCCGCCTGGGTGCGGAGGTAGTACATGCCAGTCTTGAGAC 25348 Query 110391 CTTGTTTCCATGCGTACATATGCATAGAAGAGAGCTTGGACATCGTTGGACTTTC---CA 110447 | | |||||| || | ||||| | || |||| ||| | || ||| || Sbjct 25349 CCAGCTTCCATCCGGTGAAGTGCATGCTCGTGATCTTGCCCATAGAAGG---TTCACGCA 25405 Query 110448 TGAAGAGGTTCAT--ACTTTGACTTTGGTCAATGAA-GCGCCCCCGTTGTGCCGCCATAT 110504 || || ||||| ||| |||| |||| ||||| ||||| | || | || ||||| | Sbjct 25406 TGTGGATGTTCAGGGACTGAGACT--GGTCGATGAAAGCGCCACGGTCG-GCGGCCATCT 25462 Query 110505 CAATGACATCCTTCATCTTAATTTCCCAAACTGTGCGATAGAGATTCTTGATATCATCTG 110564 | || | || | || ||||| || || ||||| |||||||||||| | Sbjct 25463 GGACGATGGTCCTCTGCGAGATCTCCCAGACGGTCTTGTAGAGGGCCTTGATATCATCCG 25522 Query 110565 GGATATCTGAG-ATATTCTGGATGGAACCCCCCGCCTTCACCATGAGATCCTTCATATCC 110623 |||| ||| | || |||||||| ||||| || | | ||| | | ||||| ||| Sbjct 25523 GGAT-GCTGCGAATGTTCTGGATAGAACCATCCTCGGCGATGATGCGGTTCTTCAGGTCC 25581 Query 110624 TTGGACCAGAGACCAATCTTCTTGAGGTCATTGACGAGGTGCTTGTTGACAATGACAAAC 110683 | |||||| |||||| || | ||||| |||| || |||||| | ||| Sbjct 25582 TCGGACCACAGACCACACTGCACAAGGTCCTTGAGCAGCCATGGGTTGACCACCTGGAAC 25641 Query 110684 TCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTA 110743 ||||| ||||| | | | |||||||||| | ||||| || |||||||| || || Sbjct 25642 TCACCAGCGAGCACACGCCGCTGGTAGATGTTGGACGTGTAGGGCTCAAAGCACTCGTTG 25701 Query 110744 TTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGA 110803 || |||| ||| || | ||| ||||| || ||||| || |||||||| | ||||| || Sbjct 25702 TTGCCCAGGATCTGCGAGGTCGAGGCAGTGGGCATAGGCGCCATCAACAAGCTGTTGCGG 25761 Query 110804 AGACCCTTCTCCTTGATGCGTTCCTTGAGAACATCCCAGTCGTAGTTGAGC-TTGGTTTC 110862 | || | || |||||| |||| || | |||||||| || | | || || Sbjct 25762 ACGCCATGCTGCTTGATCTTGGCCTTCAGGGCGTCCCAGTCCCAGAGGTCCGAGGGCTTG 25821 Query 110863 ACCT--TCCCACATGTCAAACTGAAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTT 110920 || | ||||||||||| ||||||| | || || || ||||||| ||||| | | Sbjct 25822 ACGTTGTCCCACATGTCGTACTGAAGGATACCCTGAGAAACGGGAGATCCCTCGTACGAC 25881 Query 110921 TCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATG 110980 |||| ||| | | | || | || || || |||| ||||| || ||| Sbjct 25882 AAGTAGGGACCGTCCACCTTGGCAATGTCGCACGATGCGGTGAGGGCGGCGTGGTAGATG 25941 Query 110981 GTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCAC 111040 || |||||||| | |||| || ||| ||| || || || | |||| Sbjct 25942 GTCTCAAAGATCTGCTTGTTCAGCTGACGGGCCTCAGGCGACTCGAAGGGCAGGCGGAGA 26001 Query 111041 AAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTA 111100 | || |||| || ||||| ||||| |||| || ||||| | ||| ||||| || Sbjct 26002 GCCAAGAAGGCATCAGCCAGACCCTGAACGCCCACGCCGATAGGGCGGTGGCGCATGTTG 26061 Query 111101 GACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTG 111160 || || || || || ||||| | || | || | || ||| || || | Sbjct 26062 CTGTTGCGAGCCTCCTGGACAGGATAGTAGTTGATATCGACGATCTTGTTCAGGTTGCGG 26121 Query 111161 GTAACAATCTTTGTGATTTCATGAAGTTTTTCATAAT--CAAAAGTGCGAGTCTCTTCAT 111218 |||| | |||| ||| || || | | | | ||| || |||| | | Sbjct 26122 ACGACAACTTGGGTGACTTCGTGCAGCAGCTGGAAGTTGTAGCAGT-CG-TTCTCATAGT 26179 Query 111219 TGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTG 111278 ||| ||| || |||||||| || |||| ||||| ||||| ||| || | | Sbjct 26180 CGACGAACTGAGGCAGGGCGATGGACGCCAGGTTGCAGACAGCAACCTCGTCAGGGGCAG 26239 Query 111279 TGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGT 111338 |||||| | || || || || | |||||| || || || |||| ||||| |||| Sbjct 26240 AGTACTCGATGATCTCCGTGCAGAGGTTGGAGCTGCGGATGGTGCCCAGGTTCTTCTGGT 26299 Query 111339 TACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTG 111398 | ||||| |||| |||||||| |||||| | || | || ||||| ||||| | Sbjct 26300 TGCTCTTGCGGTTGGCGTGGTCCTTGTACAGCATGAATGGGTTGCCGGTCTCGGTCTGCG 26359 Query 111399 ATTTGAGAATAGCCTTCCA-AACATCGGCGGCTGGTACAATGGCGT-TGGCC-CGTCCCT 111455 | ||| || || | ||| | | || | | | | ||| | | | ||||| || |||| Sbjct 26360 CCTCGAGGATGGCATACCACAGCTTCTGTGCC---TTCAAGGTCTTCTGGCCGCGACCCT 26416 Query 111456 CCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTG 111515 | ||| ||||| ||| | ||| || |||||||| || ||||| || || | Sbjct 26417 CGCGCTCATACTTCTCGTACAAGGCCTCGAACTCCTCGCCGTAGCAGTCGGCCAGGCCGG 26476 Query 111516 GTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAA 111575 | || || || || | ||| | ||| | || | ||| || ||||||||||| | Sbjct 26477 GACACTCGTTGGGGCACATAAGGGTCCAGTCGCCGTTCTTCTCCACACGCTTCATGAAGA 26536 Query 111576 GGTCTGGAATCCACAGGGATGAAAAGAGATCTCTA-CACCGAGCCTCTTCGTCACCTTGG 111634 | || || ||||| |||| ||||| || | | ||| || ||||||| | || ||| Sbjct 26537 GATCAGGGATCCAGAGGGCCAGGAAGAGGTCACGAGCACGGA-CCTCTTCCTTTCCGTGG 26595 Query 111635 TTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCG 111694 || || | || |||||||| | || ||| |||||||| ||||| || |||| || Sbjct 26596 TTCTTGCGCAGGTCGAGGAACTCGAAGACATCAGCGTGCCACGGCTCCAGGTAGATGGCA 26655 Query 111695 ATAGATCC----CTTTCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATAC 111750 | | || | | | | ||| | || | || ||||| || ||| ||| || || Sbjct 26656 AAGGCACCGGGGCGCTTGTTG-CCACCCTGGTCGACGTAGCGAGCAGTGTTGTTGAAGAC 26714 Query 111751 GCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATT 111810 || ||||| || || || |||| || || || || || |||| || | | Sbjct 26715 ACGCAGCATGGGGATGATGCCATTAGACGTGCCGTTGGTGCCGGCAATATAGGAGCCAGT 26774 Query 111811 GGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACA 111870 ||| | | |||| | | ||||| || || ||| ||| ||||| ||||| Sbjct 26775 GGCACGGATGCGGTGGACATTGAGACCAATGCCTCCGGCCATCTTGGAGATCATGGCACA 26834 Query 111871 CTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCA 111930 | | || || |||||||||| | ||| |||||||| || | | |||||||| Sbjct 26835 GGTCTTGAGGGTGTCATAGATACCCTCGATGCTATCCTCCTTCATGTCCACTAGGAAGCA 26894 Query 111931 ACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAA 111990 |||| ||| | || || || || ||||| || || || | ||||| |||| Sbjct 26895 CGATGACAGCTGTGCCTGAGGCGTGCCGGCGTTGAATAGAGTCGGCGAAGCGTGTGTGAA 26954 Query 111991 CATACCT-TGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGA 112049 | || | | ||| | | || ||| ||||||| || || |||| || || || Sbjct 26955 GA-ACTTGTTGGAGAGGTAGTTGTAGGTCTCCAGAACCCTCTCGATGTTGTCTCCCCAGA 27013 Query 112050 TGCCGATTGCGACCCGCATGAACATGTACTGTGG 112083 |||| | ||||| ||||| | ||||| |||||| Sbjct 27014 TGCCAACGGCGACACGCATCAGCATGTGCTGTGG 27047 >seq1057 Length=53502 Score = 96.9 bits (106), Expect = 4e-15 Identities = 159/226 (70%), Gaps = 4/226 (2%) Strand=Plus/Plus Query 11630 GCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGA 11689 ||||||||||| ||||||||||| || || || || | ||||| ||||||| Sbjct 21603 GCATCAATCTCGTCAATGAAGACGATGCAGGGCGCGTTCTTCCGGGCCTGCGCAAAGAGG 21662 Query 11690 TCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGT--TTGCGGCAGAGC 11747 ||||| || || |||||| ||||| ||||||||||| || || | || || || | Sbjct 21663 TCGCGCACTCTCGAGGCACCGACACCGACAAACATCTCGACGAATTCGGAGCCGCTGA-C 21721 Query 11748 ACTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCG 11807 ||| || ||| || || || ||||| ||| | || |||||| || ||||| || | Sbjct 21722 ACT-GAAGAACGGCACGCCCGACTCACCGGCGGTCGCCTTGGCGAGCAGCGTCTTACCAG 21780 Query 11808 TACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACC 11853 |||| ||| || | | | |||||| || || |||||||| || Sbjct 21781 TACCGGGCGGGCCAGACAAGATGGCGCCACGCGGAATCTTGGCGCC 21826 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628013802772800